TCONS_00061687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061687
Unique NameTCONS_00061687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061687 ID=TCONS_00061687|Name=TCONS_00061687|organism=Clytia hemisphaerica|type=transcript|length=3293bp
GCGAGATTTCCACAGCTGATTATCACATCACAAGCGCAAAGTGGTAGAAT
GAGGGGGAaggaaatttttctttcaacagGGTTATCTTTTTACATGCACC
TTTTTTCTGTTATAAATCGTACCTCCAATTCAATAACAAGGAGAAATACA
TTCTCTCCAATATCTATATAATATcatcaataaaaagaaaaattcattaa
aaaatcttCCTTGGGAATGAATGGGCGAGACTGCACCAATGAAGGGGCGG
CCAACCCGCCACGTTACAATAGTAAGAGCGTGAGAAGGGTGAAGTAAAAA
GGTTATGTACATTTTGTTTGtataaaactgaaaaaattaacaaaaaacca
aataatttttctaatatatttcTCTACGTATGGTTGtggtggaaaaaaat
ttttgaatttaaattgcaacgataaattcttaaaaaaataaaatattgaa
TGAAACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAAA
AACTGTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGTA
AAAAGGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATCT
CTACAAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACCT
ACAAAAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCGT
TGTATTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACaacttacaatc
aaagaaatttCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTAT
ACAGGGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAGT
AAttttttgtcaagtgttttcctatgacaagaaaaagaaatatttgacaG
CCAGGCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGccgtcaaaa
tttcttttcatcagATTTTTTGAGTCAACAGTCATCATCAAAGCATATAA
ATCAAAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTACC
TTGATTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAAAACAAGTCAG
ACAATAATATCAGTATTTGAAAATGTCAAGTGTTTTTTCTCTCCGTTGAT
GTATGCTTAAGATGTTGAAGAGTGTTTGCCATGCATGTGATGTTAAATCG
TCATCCAGGAGCCTTTAAAAGACGATCATTTAGTTAGGCTAAAACAAACT
TTGATGATACAAAGAAAACGCAATGTATCAATGTAAATTGACAGCATCAA
GGCTTTTAAAGACAGTGTTTAGATTTGGTCAAAGTGTACAGATAAGTGTA
AAATCGCGTCTTCCTATGCAGTAGACCAAAAGAATACCGGGTTAGGTAAC
TTCGAGTTTGAGGTTTCAAGTGCTAAATCATTCTAAAACATAGAAAACTG
GTCATTGAAAAACCTCAAGGTTGCATACATCTTCAGTCATCGCTTTGGGT
TTTGAAGTAACAAATGCCTCTCAATCATCCTGAAGCATAGGGAAATAGTG
GTTACGGTTACCTAGCTAGGGTAATTTCTTCGCAAAGACTGAAAGACCAT
TCTCGCattaaacaaatgaaaacacATCAACTTTGAACGCAAATACATCT
GAAACCTCTCATAAAACTTCTCACTGATGATTGATATCAACAAATGTAAA
CCTGTCCAATTGTCGTAAAAATGCAATGTTCATGTTGTATGTATATACAA
GCGAAGCAACATCAATCAACAAAGATAAATAGTACTCGACATTTTCACAA
CCCTGCCGCATGTCAATTTTGATGTCAGTAAGTGTTGTGTTTGGTGGCAG
CCTGTGCAAAGAGGAtgtgtatttttcaaattctctcAAATATCCACAAA
GGAAAGACGTTTGACAAATACAAATTGTGATTCAGTCGGTTCGAGTCAAA
TACACTGCCGTAGTTCGTGTCAATAAATACCCTTTAGTTTATCGATGTAC
GAGAAAAACCGATTAAAAAAACGATCATATACCTAGAGCTTTGCGGGAAT
TAAACTAAACATGATCGTTACTTCTATTGGCGCAAACTAAGCCGGCACAA
AACGTCAAAAACATGTTCATTAAACGTTCATGGCATCTATTCAACGTTAA
ACGAACGTCGAAACAACCAGCTACAATACATCGTAAAGGCTTGCCATGAC
TCAAGTCTAGTGTGTAGGTCCGTCACTTCCATACCAAGATGGAGATGCAC
AAAGCGTGTATACGTTCAATACAAAACAAGTCAAAACTGAACTTTTAACA
GAGTCCCGTGCCAAATTATAATGTCGTTTTTGATCAATATGAGCTATATT
CAGAACACAATAGACTTGCGCTTAGACCTGACTCACACTCAATAGCACTT
TGGAGAGTAACAAGCAAAACAATCCTTTTGAAGTTATTTTGAGGCTTCGA
CAGCATTTAGCCCATATCTTTCGGTATCTTTGCTCTTAGAAATCAACTTA
ATGTTTAAACTACGAAGTTACGCATGCTACAAATACTCACTTCTAACTTA
TCGGCCCTTTAGCCTTGGTGTTGCTAATTTATTGGCCTAAAAGGGCCCTA
GTCCGCGTGTATTTGAATCTGTTAatataaaaaaagctaaaagttTAAAA
CCGGTTTATGACTACTAATAGATATGTACAATGTATTACGAGGGTGGGGT
GAACCTAAAACGGACTAAAAATAAGGTGAACAtgttatttcaataaaaaa
gtgTTCACGGAAGACACACCAGTGGGTATATTATCTCCGTCAAAAGCATG
TCCGCGTGTATCATCAACTGAAATCCATggattgttgtttttctttttaa
caaatgtttgtttttgtacgggcgaataaaaacttcttttattTACCCGG
CAGTAACAATaagttgttttgaaaagagacaTTTCTTCCATTTTTATCCG
CCATTACCAAAATAATGCCCATGTTTGTCCTTGTCATCCCCTTAGGATTT
ACTGACAACAGTGCGTCACTTTGCATTACGTCATCACCAATGGTGTATTC
TGCAGACCAGATCGTCGTAAATAACTGCCAAAGTCAGACAAACGTGGTGA
ACCAGCCTTATTaaggaacaaaataaaacatattCGGTCAGTAAATTTAA
ACTCACGACTCCAATCTGCGACGGTTGATCAAGGGGAGGTGATCGGATAG
CAGGGTATAAACTCAGGACCAGACGGGTCTTTAATTTTCATCCATCGCCA
TCGGCTCCTCTTGTCGGCTGGCAGGGCTTTCCTCTTTCTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_36:1262301..1267767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061687 ID=TCONS_00061687|Name=TCONS_00061687|organism=Clytia hemisphaerica|type=transcript|length=5467bp|location=Sequence derived from alignment at scaffold_36:1262301..1267767- (Clytia hemisphaerica)
GCGAGATTTCCACAGCTGATTATCACATCACAAGCGCAAAGTGGTAGAAT
GAGGGGGAAGGAAATTTTTCTTTCAACAGGGTTATCTTTTTACATGCACC
TTTTTTCTGTTATAAATCGTACCTCCAATTCAATAACAAGGAGAAATACA
TTCTCTCCAATATCTATATAATATCATCAATAAAAAGAAAAATTCATTAA
AAAATCTTCCTTGGGAATGAATGGGCGAGACTGCACCAATGAAGGGGCGG
CCAACCCGCCACGTTACAATAGTAAGAGCGTGAGAAGGGTGAAGTAAAAA
GGTTATGTACATTTTGTTTGTATAAAACTGAAAAAATTAACAAAAAACCA
AATAATTTTTCTAATATATTTCTCTACGTATGGTTGTGGTGGAAAAAAAT
TTTTGAATTTAAATTGCAACGATAAATTCTTAAAAAAAGTAAAATATTGA
ATGAAACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAA
AAACTGTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGT
AAAAAGGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATC
TCTACAAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACC
TACAAAAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCG
TTGTATTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACAACTTACAAT
CAAAGAAATTTCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTA
TACAGGGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAG
TAATTTTTTGTCAAGTGTTTTCCTATGACAAGAAAAAGAAATATTTGACA
GCCAGGCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGCCGTCAAA
ATTTCTTTTCATCAGATTTTTTGAGTCAACAGTCATCATCAAAGCATATA
AATCAAAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTAC
CTTGATTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAANCCAAATAA
TTTTTCTAATATATTTCTCTACGTATGGTTGTGGTGGAAAAAAATTTTTG
AATTTAAATTGCAACGATAAATTCTTAAAAAAAGTAAAATATTGAATGAA
ACTATAATACTACTAGTAAATATTGAATAAGCAATATGAGAGTAAAAACT
GTATATACAGACAAACTGGATTATATGAAAACTCAAAGAGCTCGTAAAAA
GGTTTCAAACTATCCACAAAAGCTGTTTTGCCTTAATCACAGATCTCTAC
AAAGCCTACTAGGAGCATCATCAATGTTTGAGGATATCAGTAACCTACAA
AAAACCCTGACCTGCAAAGAACAAGAAGCTAGGATTCTGATATCGTTGTA
TTAAAGCCCTTTTCCAAGAAACAGTCCAAGAATACAACTTACAATCAAAG
AAATTTCCTTATAAAATGTCCTTTGCTTATATCGTCAGATATGTATACAG
GGAGCGCAACGCCATTTTAAAGCACATTCTAACTACAACCGACAGTAATT
TTTTGTCAAGTGTTTTCCTATGACAAGAAAAAGAAATATTTGACAGCCAG
GCGGAGAAAGAAAGCACAGATAGGGTCAAATCAAAAGCCGTCAAAATTTC
TTTTCATCAGATTTTTTGAGTCAACAGTCATCATCAAAGCATATAAATCA
AAGCAACACTCACGCACATTTTTGTGTTATAAAAACCCTCTCTACCTTGA
TTTCCTGTCGCGTTCGAGTTTAGTAGGTAGTGTTAAAACAAGTCAGACAA
TAATATCAGTATTTGAAAATGTCAAGTGTTTTTTCTCTCCGTTGATGTAT
GCTTAAGATGTTGAAGAGTGTTTGCCATGCATGTGATGTTAAATCGTCAT
CCAGGAGCCTTTAAAAGACGATCATTTAGTTAGGCTAAAACAAACTTTGA
TGATACAAAGAAAACGCAATGTATCAATGTAAATTGACAGCATCAAGGCT
TTTAAAGACAGTGTTTAGATTTGGTCAAAGTGTACAGATAAGTGTAAAAT
CGCGTCTTCCTATGCAGTAGACCAAAAGAATACCGGGTTAGGTAACTTCG
AGTTTGAGGTTTCAAGTGCTAAATCATTCTAAAACATAGAAAACTGGTCA
TTGAAAAACCTCAAGGTTGCATACATCTTCAGTCATCGCTTTGGGTTTTG
AAGTAACAAATGCCTCTCAATCATCCTGAAGCATAGGGAAATAGGTCATA
AAACCCCTAGAAGTGGTTACGGTTACCTAGCTAGGGTAATTTCTTCGCAA
AGACTGAAAGACCATTCTTGCATACAACAGAAATGAAAACACATCAACTT
TGAACGCAAATACATCTGAAACCTCTCATAAAACTTCTCACTGATGATTG
ATATCAACAAATGTAAACATGTCCAAGTGTCGTAAAAATGCAATGTTCAT
GTTGAATGTATATACAAGCGAAGCAACATCAATCAACAAAGATAAATAAT
ACTCGACATTTTCACAACCCTGCCGCATGTCAATTTTGATGTCAGTAAGT
GTTGTGTTTTGGTGGCATTCTACAGGCTGTGCAAAGAGGATGTGTATTTT
CAAATTCTCTCAAATATCCACAAAGGAAAGACGTTTGACAAATACAAATT
GTGATTCAGTCGGTTCGAGTCAAATACACTGCCATAGTTCGTGTCAATAA
ATACCCTTTAGTTTATCGATGTACGAGAAAAACCGATTAAAAAAACGATC
ATATACCTAGAGCTTTGCGGGAATTAAACTAAACATGATCGTTACTTCTA
TTGGCGCAAACTAAGCCGGCACAAAACGTCAAAAACATGTTCATTAAACG
TCCATGGAATCTATTCAACGTTAAACAAACGTCGAAACAACCAGCTACAA
TACATCGTAAAGGCTTGCCATGACTCAAGTCTAGTGTGTAGGTCCGTCAC
TTCCATACCAAGATGGAGATGCACAAAGCGTGTATACGTTCAATACAAAA
CAAGTCAAAACTGAACTTTTAACAGAGTCCCGTGCCAAATTATAATGTCG
TTTTTGATCAATATGAGCTATATTCAGAACACAATAGACTTGCGCTTAGA
CCTGACTCACACTCAATAGCACTTTGGAGAGTAACAAGCAAAACAATCCT
TTTGAAGTTATTTTGAGGCTTCGACAGCATTTAGCCCATATCTTTCGGTA
TCTTTGCTCTTAGAAATCAACTTAATGTTTAAACTACGAAGTTACGCATG
CTACAAATACTCACTTCTAACTTATCGGCCCTTTAGCCTTGGTGTTGCTA
ATTTATTGGCCTAAAAGGGCCCTAGTCCGCGTGTATTTGAATCTGTTAAT
ATAAAAAAAGCTAAAAGTTTAAAACCGGTTTATGACTACTAATAGATATG
TACAATGTATTACGAGGGTGGGGTGAACCTAAAACGGACTAAAAATAAGG
TGAACATGTTATNCAGCAAGTGTAAAATCGCGTCTTCTTACAGTAGACCA
AAACAATGTCGGGTTAGGTAACTTAGGTTTCAAGTGCTAAATCATTCTAA
AACATAGAAAACTGGTCATTGAAAAACCTCGAGGTTGCATACATCTTCAG
TCATCGCTTTGGGTTTTGAGGTAACAAATGCCTCTCAATCATCCTGAAGC
ATAGAGAAATAGGTCATAAAAGTGGTTACGGTTACCTAGCTAGGGTAATT
TCTTCGCAAAGACTGAAAGACCATTCTCGCATTAAACAAATGAAAACACA
TCAACTTTGAACGCAAATACATCTGAAACCTCTCATAAAACTTCTCACTG
ATGATTGATATCAACAAATGTAAACCTGTCCAATTGTCGTAAAAATGCAA
TGTTCATGTTGTATGTATATACAAGCGAAGCAACATCAATCAACAAAGAT
AAATAGTACTCGACATTTTCACAACCCTGCCGCATGTCAATTTTGATGTC
AGTAAGTGTTGTGTTTGGTGGCAGCCTGTGCAAAGAGGATGTGTATTTTT
CAAATTCTCTCAAATATCCACAAAGGAAAGACGTTTGACAAATACAAATT
GTGATTCAGTCGGTTCGAGTCAAATACACTGCCGTAGTTCGTGTCAATAA
ATACCCTTTAGTTTATCGATGTACGAGAAAAACCGATTAAAAAAACGATC
ATATACCTAGAGCTTTGCGGGAATTAAACTAAACATGATCGTTACTTCTA
TTGGCGCAAACTAAGCCGGCACAAAACGTCAAAAACATGTTCATTAAACG
TTCATGGCATCTATTCAACGTTAAACGAACGTCGAAACAACCAGCTACAA
TACATCGTAAAGGCTTGCCATGACTCAAGTCTAGTGTGTAGGTCCGTCAC
TTCCATACCAAGATGGAGATGCACAAAGCGTGTATACGTTCAATACAAAA
CAAGTCAAAACTGAACTTTTAACAGAGTCCCGTGCCAAATTATAATGTCG
TTTTTGATCAATATGAGCTATATTCAGAACACAATAGACTTGCGCTTAGA
CCTGACTCACACTCAATAGCACTTTGGAGAGTAACAAGCAAAACAATCCT
TTTGAAGTTATTTTGAGGCTTCGACAGCATTTAGCCCATATCTTTCGGTA
TCTTTGCTCTTAGAAATCAACTTAATGTTTAAACTACGAAGTTACGCATG
CTACAAATACTCACTTCTAACTTATCGGCCCTTTAGCCTTGGTGTTGCTA
ATTTATTGGCCTAAAAGGGCCCTAGTCCGCGTGTATTTGAATCTGTTAAT
ATAAAAAAAGCTAAAAGTTTAAAACCGGTTTATGACTACTAATAGATATG
TACAATGTATTACGAGGGTGGGGTGAACCTAAAACGGACTAAAAATAAGG
TGAACATGTTATTTCAATAAAAAAGTGTTCACGGAAGACACACCAGTGGG
TATATTATCTCCGTCAAAAGCATGTCCGCGTGTATCATCAACTGAAATCC
ATGGATTGTTGTTTTTCTTTTTAACAAATGTTTGTTTTTGTACGGGCGAA
TAAAAACTTCTTTTATTTACCCGGCAGTAACAATAAGTTGTTTTGAAAAG
AGACATTTCTTCCATTTTTATCCGCCATTACCAAAATAATGCCCATGTTT
GTCCTTGTCATCCCCTTAGGATTTACTGACAACAGTGCGTCACTTTGCAT
TACGTCATCACCAATGGTGTATTCTGCAGACCAGATCGTCGTAAATAACT
GCCAAAGTCAGACAAACGTGGTGAACCAGCCTTATTAAGGAACAAAATAA
AACATATTCGGTCAGTAAATTTAAACTCACGACTCCAATCTGCGACGGTT
GATCAAGGGGAGGTGATCGGATAGCAGGGTATAAACTCAGGACCAGACGG
GTCTTTAATTTTCATCCATCGCCATCGGCTCCTCTTGTCGGCTGGCAGGG
CTTTCCTCTTTCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038682XLOC_038682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061687-exon-scaffold_36-1575043694:1267330..1267767TCONS_00061687-exon-scaffold_36-1575043694:1267330..1267767Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1575043694:1265474..1266583TCONS_00061687-exon-scaffold_36-1575043694:1265474..1266583Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1575043694:1262301..1264045TCONS_00061687-exon-scaffold_36-1575043694:1262301..1264045Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1510915933:1267330..1267767TCONS_00061687-exon-scaffold_36-1510915933:1267330..1267767Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1510915933:1265474..1266583TCONS_00061687-exon-scaffold_36-1510915933:1265474..1266583Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1510915933:1262301..1264045TCONS_00061687-exon-scaffold_36-1510915933:1262301..1264045Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1491911889:1267330..1267767TCONS_00061687-exon-scaffold_36-1491911889:1267330..1267767Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1491911889:1265474..1266583TCONS_00061687-exon-scaffold_36-1491911889:1265474..1266583Clytia hemisphaericaexon
TCONS_00061687-exon-scaffold_36-1491911889:1262301..1264045TCONS_00061687-exon-scaffold_36-1491911889:1262301..1264045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1262301..1267767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0894714	0.0429073	0.0961297	0.0936871	0.0192358	0.0207121	0	0.0288751	0.0600585	0.0337087	0.0157194	0.0298187	0.099311	0	0.092562	0.0230555	0.100234	0.049889	0.395097	0.122983	0	0.0376626	0.35836	0.777919	0	0.132869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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