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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061697 ID=TCONS_00061697|Name=TCONS_00061697|organism=Clytia hemisphaerica|type=transcript|length=862bp
TTCCAAATGGTCAAATCATCTCTGGCTTTATTTCACCCCAACATTTCCAC
CGGGTAAAGTAAGCAAATTAATAACATGTCGTTATTAACCGAAGAATACT
TTTCCATCTATGTCATATTATTTCTATCTTCTCTTAGAACCCATTCGTAA
CCACACAACAGGTGGTCTTTTGTGTGAGCAAGAAAATCCCGATGACCCAT
GTCCAGATGAAATTGGACAAAAGATCGTACCAATTTACATGGCAATTTAC
ATGTTGATGACGAATATATTATTGTTGAATCTGCTCATTGCCATTTTCAA
taACACTTACGAAAAGGTGCAAGAGAATTCGGATCGTTTGTGGAAGTTTA
AACGTTATGATGTCATAAGTGAATACAATGACCGCCCATCATTTTGTCCG
CCCTTCATTGTGTTGGCTCATATTTGGTTTTTCGGATTGTTCTTGTTCCG
ATGTTGTTGTAAAGGAACAAGACAAACCAAATTTGGAACGCTCAATAAAT
CGTTTTACGTGGACGAGATCATTTTGTTACGTAAATGGGAGAAGAGCAGG
ATGGAGGCTTACAATTATTTACACGAGAAACGTGAAGCAGATACGCAAGA
CAAACGTGTCAAGTCTATTNcagggctcgaaataacgatatttaggtggt
cggacacactgtccgatcaaaaattgatttggttcggacatgtcctaagg
cttttaaagtaaaatgggtcggacatgtccgattgatttttatgtggggT
ATACTTCATGTCTAATACaagcttctgatagaattttacattgatcacga
agaagctaaacaaatgtCAATTAATGGTCAGAAGCCCATGATTTTTACTT
GAAGCATGCTTT Run BLAST on NCBI protein sequence of TCONS_00061697-protein >TCONS_00061697-protein ID=TCONS_00061697-protein|Name=TCONS_00061697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSYYFYLLLEPIRNHTTGGLLCEQENPDDPCPDEIGQKIVPIYMAIYMLM
TNILLLNLLIAIFNNTYEKVQENSDRLWKFKRYDVISEYNDRPSFCPPFI
VLAHIWFFGLFLFRCCCKGTRQTKFGTLNKSFYVDEIILLRKWEKSRMEA
YNYLHEKREADTQDKRVKSIXGLEITIFRWSDTLSDQKLIWFGHVLRLLK Run BLAST on NCBI transcript from alignment at scaffold_36:1407110..1410624- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061697 ID=TCONS_00061697|Name=TCONS_00061697|organism=Clytia hemisphaerica|type=transcript|length=3515bp|location=Sequence derived from alignment at scaffold_36:1407110..1410624- (Clytia hemisphaerica)
TTCCAAATGGTCAAATCATCTCTGGCTTTATTTCACCCCAACATTTCCAC
CGGGTAAAGTAAGCAAATTAATAACATGTCGTTATTAACCGAAGAATACT
TTTCCATCTATGTCATATTATTTCTATCTTCTCTTAGAACCCATTCGTAA
CCACACAACAGGTGGTCTTTTGTGTGAGCAAGAAAATCCCGATGACCCAT
GTCCAGATGAAATTGGACAAAAGATCGTACCAATTTACATGGCAATTTAC
ATGTTGATGACGAATATATTATTGTTGAATCTGCTCATTGCCATTTTCAA
GTAAGTTGTATGTTTGAAATATTCGCAAACAAAAGTTCCAATATGTATTA
TCATGAAAACTTTACAACACGACTTTGGGGTTTAGAACAATTTAATCTCG
AGAAATAACACGTTTATTATAAGAAAAATTTTTAGAATAAATTGTTTTTT
TTTATTCTAACTTTCTCCATTTTTCGAGTATCTCAGTCCATTTTTGTAAA
ATAATCAGGTGTTTTAGAGACAATAAATGTTCTCCTTAACGTGTTCTTAA
TATTTTGTTCATAGAAGCAATAAAATCTATTAAAGTTTGTTCTTATAAGA
GGAACCAGTACTCAACTGCTTGAGGACGCAATACAAAAAAACTTGTCATT
TATAAGACGTCTTATTCTTTTTAGCCGCAAGTCTAAAAAAGATATACAAT
ACTCAAATTTGTGTGCCCTCTTTAAACTTAATTTGAGGCCGATTTCGAGT
TTGGTTCTCTTACGCATTCCAGTTACTCGTGTGTCCATTTCATCAAACTC
TCTTCTTGAGATATTATGTCTTTCAATTATTGCTCCAATGATGAATCTTT
ACCAACAAACTCTATAGGCTGCTTGCATCCTCTAACGAAATGAACACTTA
CGGTTTTGTAGAGGTCTGCGATTCAGACTACAAACTCCACTTTTAATCAA
ATAGCTCGACATTTTACTCGATGTTTCTTTATTTCATATTTGCCTCATCG
GTGACTTTTCTTTTCTTTTCTTTTCTAGTAACACTTACGAAAAGGTGCAA
GAGAATTCGGATCGTTTGTGGAAGTTTAAACGTTATGATGTCATAAGTGA
ATACAATGACCGCCCATCATTTTGTCCGCCCTTCATTGTGTTGGCTCATA
TTTGGTTTTTCGGATTGTTCTTGTTCCGATGTTGTTGTAAAGGAACAAGA
CAAACCAAATTTGGAACGCTCAGTAAGCTGTTTTTTTACTTCTCCTTCTT
TTGTAATAAGTGCATTCTTATCAGTTAAATTAAAGACCTAAAGAATAAGG
TAGTAAATTTTTATCTTTATTGCTTTACAGACTAAATTTGGTAGTTTTTC
CAAGTTTTTGAGAAATTTACGTTCAATTTTTAATTTTATCCAGTTTAATC
CACTAATTTGAACTTTTTCTTTTTGTGGCTTTTTATTTCTATTTTGCATT
TTTGTGAAGACGTAGTAGTTTTTGCTGCCTTTTTAGGAGTTTTTTTTGCT
TAAATTCTACTTATTTTTTCACCGAACGACCGATCCTCTCTTTTCTCAAC
TTCATTTGAGCTACAATTTGACAATGTCTGTGTGTCTGTCTGTCTGTCAC
AAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATGCTTGGATTTGGCTGA
AATTTGGCACACTTGTTACTTGGGTGAATATCTGGGGGCTATTTTTCATT
TTTCAAAAATTTTGATTTTTTGGGCCTGGGGACGAGTTATTCGCCAAAAA
GAGGCTATAACTTTGGCGCAGCCTGGAGACTTTGGCTGAAATTTGTCACA
CTTGTTCCTTGTGTGAATATCTGGGGGTGTTTTTTTTTTCATTTTTTGAA
AATTTTGATTTTTGCGGCCTGGGGATGAGTTTTTCGCCAAAACGAGGCCA
AAACTTTGGGGCAGTCTGGAGACTTCAAAAATTGTTTGATTTGGCTGAAG
TTTTGCACACTTGTTCCTTGGGTGAATATCTGGGGGTCTACAATCGGGCC
TATAGTTTGAAGGCACTAAAGTTGAGCCCAGTGTGTTGCGCACGTTTGAC
TATTGTATAGCTTGACCCGTAAAACAACAAATTAAATTGGCCTCGTCTTA
GATTGGCGAAGAAAATTCGGCTAACTAAGGGGGGATTTTTCGGGAACACG
CTTACAGGCATATTTTTACATTAGGAAGAAATTTTGGCGAAAAGTACTTA
TATATTTTGGTTTTTCGTTGAAATTCGCCTTCGCTTGAGTGTTCATTTCA
TCTAAAAATGCAATCGCCCCTCTTTGTAACAGCTGTGGTCATTCAAGAAA
ATGAAAACTGGAGGAGGGGGGGGCTCCCTTAATGAGGCCCCCCAAACGGA
CCCTCAATTCACGAAATCATGCAATTTTTTTTCGAAATTCACGCATTCAC
ACAATAACCCGATTTTTCAGAAATCGGAAAATTTTAATAATCGGTGGAAA
AAAGGAAAAATTCACATATTCACGCACAAGATAACCCAGATTCACGGTCA
CGCTTTCACGCAATCAAAAAGTGCATTTTCACGTTCACTCAAGTTTTTTC
AATTCACGCATTCACGCATTTTTTTTTCAATTTTCACGCATTCACGCAAC
CGATAATGCCCATTCACGCAATCACGCAAACCGCTGGGGGGCCCTCTTGA
TTTCTGCTGATCCTTCTGAATAATAACGAAATTCGTTGCCAAAAATTCCT
CTGAAATTTAATTGTTTTTTCGCATTTTAATCGAATTTCGCCACACGTTC
GAAAAAAGGTTTTGCCGAATTCAGATTTACCAAAACTGATTTTGTCAAAT
GGTATCGAAATAGGCGAGTTGGCTTATTTACCAATTTTTTGATTCTCTTT
GAGCATTTTCATTTTTTGAGAATAAATCCATTCGAAGCTTATGTAACTTT
AGAATAAGGTAATCTATTTAAAGGTGTTGTTTTTACATAAGTGTTCCCGT
TTCATATCAGTCACATATTTCATATCAGAACAGTGNAACCATAAAATAAT
TTTTCTTTCTCTCTGACTAATCTTTCTCCACATCCGTGTCAATTGAATGT
GAAAAAGCTTGTGAGTTAGATTTGATGAATAAGCAAACGATATCACCCTT
ATTTAAAAGTAAAACCTTTAAGTTAATCACTTCCCTTTTCTTTTCAGATA
AATCGTTTTACGTGGACGAGATCATTTTGTTACGTAAATGGGAGAAGAGC
AGGATGGAGGCTTACAATTATTTACACGAGAAACGTGAAGCAGATACGCA
AGACAAACGTGTCAAGTCTATTNCAGGGCTCGAAATAACGATATTTAGGT
GGTCGGACACACTGTCCGATCAAAAATTGATTTGGTTCGGACATGTCCTA
AGGCTTTTAAAGTAAAATGGGTCGGACATGTCCGATTGATTTTTATGTGG
GGTATACTTCATGTCTAATACAAGCTTCTGATAGAATTTTACATTGATCA
CGAAGAAGCTAAACAAATGTCAATTAATGGTCAGAAGCCCATGATTTTTA
CTTGAAGCATGCTTT Coding sequence (CDS) from alignment at scaffold_36:1407110..1410624- >TCONS_00061697 ID=TCONS_00061697|Name=TCONS_00061697|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_36:1407110..1410624- (Clytia hemisphaerica)
ATAAATCGTTTTACGTGGACGAGATCATTTTGTTACGTAAATGGGAGAAG
AGCAGGATGGAGGCTTACAATTATTTACACGAGAAACGTGAAGCAGATAC
GCAAGACAAACGTGTCAAGTCTATTNCAGGGCTCGAAATAACGATATTTA
GGTGGTCGGACACACTGTCCGATCAAAAATTGATTTGGTTCGGACATGTC
CTAAGGCTTTTAAAGTAATAACACTTACGAAAAGGTGCAAGAGAATTCGG
ATCGTTTGTGGAAGTTTAAACGTTATGATGTCATAAGTGAATACAATGAC
CGCCCATCATTTTGTCCGCCCTTCATTGTGTTGGCTCATATTTGGTTTTT
CGGATTGTTCTTGTTCCGATGTTGTTGTAAAGGAACAAGACAAACCAAAT
TTGGAACGCTCAATGTCATATTATTTCTATCTTCTCTTAGAACCCATTCG
TAACCACACAACAGGTGGTCTTTTGTGTGAGCAAGAAAATCCCGATGACC
CATGTCCAGATGAAATTGGACAAAAGATCGTACCAATTTACATGGCAATT
TACATGTTGATGACGAATATATTATTGTTGAATCTGCTCATTGCCATTTT
CAAATAAATCGTTTTACGTGGACGAGATCATTTTGTTACGTAAATGGGAG
AAGAGCAGGATGGAGGCTTACAATTATTTACACGAGAAACGTGAAGCAGA
TACGCAAGACAAACGTGTCAAGTCTATTNCAGGGCTCGAAATAACGATAT
TTAGGTGGTCGGACACACTGTCCGATCAAAAATTGATTTGGTTCGGACAT
GTCCTAAGGCTTTTAAAGTAATAACACTTACGAAAAGGTGCAAGAGAATT
CGGATCGTTTGTGGAAGTTTAAACGTTATGATGTCATAAGTGAATACAAT
GACCGCCCATCATTTTGTCCGCCCTTCATTGTGTTGGCTCATATTTGGTT
TTTCGGATTGTTCTTGTTCCGATGTTGTTGTAAAGGAACAAGACAAACCA
AATTTGGAACGCTCAATGTCATATTATTTCTATCTTCTCTTAGAACCCAT
TCGTAACCACACAACAGGTGGTCTTTTGTGTGAGCAAGAAAATCCCGATG
ACCCATGTCCAGATGAAATTGGACAAAAGATCGTACCAATTTACATGGCA
ATTTACATGTTGATGACGAATATATTATTGTTGAATCTGCTCATTGCCAT
TTTCAAATAAATCGTTTTACGTGGACGAGATCATTTTGTTACGTAAATGG
GAGAAGAGCAGGATGGAGGCTTACAATTATTTACACGAGAAACGTGAAGC
AGATACGCAAGACAAACGTGTCAAGTCTATTNCAGGGCTCGAAATAACGA
TATTTAGGTGGTCGGACACACTGTCCGATCAAAAATTGATTTGGTTCGGA
CATGTCCTAAGGCTTTTAAAGTAATAACACTTACGAAAAGGTGCAAGAGA
ATTCGGATCGTTTGTGGAAGTTTAAACGTTATGATGTCATAAGTGAATAC
AATGACCGCCCATCATTTTGTCCGCCCTTCATTGTGTTGGCTCATATTTG
GTTTTTCGGATTGTTCTTGTTCCGATGTTGTTGTAAAGGAACAAGACAAA
CCAAATTTGGAACGCTCAATGTCATATTATTTCTATCTTCTCTTAGAACC
CATTCGTAACCACACAACAGGTGGTCTTTTGTGTGAGCAAGAAAATCCCG
ATGACCCATGTCCAGATGAAATTGGACAAAAGATCGTACCAATTTACATG
GCAATTTACATGTTGATGACGAATATATTATTGTTGAATCTGCTCATTGC
CATTTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061697-exon-scaffold_36-1575043694:1410325..1410624 | TCONS_00061697-exon-scaffold_36-1575043694:1410325..1410624 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1575043694:1409403..1409596 | TCONS_00061697-exon-scaffold_36-1575043694:1409403..1409596 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1575043694:1407110..1407477 | TCONS_00061697-exon-scaffold_36-1575043694:1407110..1407477 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1510915933:1410325..1410624 | TCONS_00061697-exon-scaffold_36-1510915933:1410325..1410624 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1510915933:1409403..1409596 | TCONS_00061697-exon-scaffold_36-1510915933:1409403..1409596 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1510915933:1407110..1407477 | TCONS_00061697-exon-scaffold_36-1510915933:1407110..1407477 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1491911889:1410325..1410624 | TCONS_00061697-exon-scaffold_36-1491911889:1410325..1410624 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1491911889:1409403..1409596 | TCONS_00061697-exon-scaffold_36-1491911889:1409403..1409596 | Clytia hemisphaerica | exon |
| TCONS_00061697-exon-scaffold_36-1491911889:1407110..1407477 | TCONS_00061697-exon-scaffold_36-1491911889:1407110..1407477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1407110..1410624 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005262 | calcium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0070588 | calcium ion transmembrane transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0070588 |
calcium ion transmembrane transport |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005262 |
calcium channel activity |
| molecular_function |
GO:0005216 |
ion channel activity |
Blast
The following BLAST results are available for this feature:
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