TCONS_00061699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061699
Unique NameTCONS_00061699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061699 ID=TCONS_00061699|Name=TCONS_00061699|organism=Clytia hemisphaerica|type=transcript|length=685bp
TATTAAGAAAACAGAATGCTGATATTTTTTGACAGACTGGTGATTAGCGT
GAACTCAAAAAATTACAAGGATGAAGCTTTACTTCTTGATATTTACTGCA
GTTGTTTTAGTTTACGCTAACGAATGGCCACCTGTCAGCGAGGAAGATTG
TTCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACC
CTCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGG
AATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCAT
GAACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTG
GGATTGAATTATCACACTCTGGAGGCCAGTTCATGTTCTCAATGGCTGAC
GGCAATCGAAAAACCTCAGACGGCAAGTTACAAAAATCTTCCAAACTTGC
TTGGCCAATCGATACCGAACATTGCAAAAGACATTGCCAGAACTGCGAGA
AAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGATATT
ATGATGGTAGGCGATAAACATACTATTAAATTGGAACGCATTTCTGAGAA
ACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCACATCAAG
ATCATTTGAATGAAGGAGATCGTGAAATCACTGGT
Run BLAST on NCBI

protein sequence of TCONS_00061699-protein

>TCONS_00061699-protein ID=TCONS_00061699-protein|Name=TCONS_00061699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKLYFLIFTAVVLVYANEWPPVSEEDCSPDTKQKAMHGKMTFDPPLSESP
MTSFEVDVEWNDLKFHPTENMEMKGGMNVVYTLGMKNGPEGRFGIELSHS
GGQFMFSMADGNRKTSDGKLQKSSKLAWPIDTEHCKRHCQNCEKDNGLTT
GTYCSSEEDIMMVGDKHTIKLERISEKQTINTKDFGGFEKAHQDHLNEGD
REITG
Run BLAST on NCBI

transcript from alignment at scaffold_36:1462646..1466286-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061699 ID=TCONS_00061699|Name=TCONS_00061699|organism=Clytia hemisphaerica|type=transcript|length=3641bp|location=Sequence derived from alignment at scaffold_36:1462646..1466286- (Clytia hemisphaerica)
TATTAAGAAAACAGAATGCTGATATTTTTTGACAGACTGGTGATTAGCGT
GAACTCAAAAAATTACAAGGATGAAGCTTTACTTCTTGATATTTACTGCA
GTTGTTTTAGTTTACGGTAAGTTTGAAATCCCACCCGTTTCAATATTTTG
GTCAAGTTATCAAAGTTCACTTCAAACAGCAAAAATGGTAATTCCCAATC
CATACATACATGCATAACTAAGTTGGTATTGTATTGGAGTTCGTTACCAA
AAGACTACATTAAGAGGACTTATTTTGGCGAGAAATAATTTTGGCAAATT
AGATTAGATAGAATTTGCCAAAATTAAATACTTTGCCCATTCAATTCATC
AAAATAAGTTCTCGCCACAGTTAATTGCTTTTGTTTTTTGAAAAAAAAAA
ACCCTAAATTCATCAAAATTGCTCAAATTAATGCAAAATAGAACAAATTC
AGTCATTCGTTAAAGTNCACCCTAAATTCATCAAAATTGCTCAAATTAAG
GCAAAATAGAACAAATTCAGTCATTCGTTAAAGTTAGTTCTTGCCAAAAT
TAATAAGTTGGACCATATTCGCAATATTTTGATAGCTAACGATTCGAAAA
AGATGAAACTTGAAGTTCTATAATTCATATTTTGTTTTTTTCTTGTACAC
TGGACCATATTCGCCAAAAAAGTTCTCGCCAAAATTAAAAATTCTCAAGA
TATATGCTGCTCACTCACCAATATTAGTTCTCGTCAAAATTAGTGTACGA
TTCATAAAAAGTGTCGGGCTATGGGGCATGAAATAAAATTCCAGTTGTGT
CTCCCTTTTAAAACTTCAAAACAGAATTTAAGGAGCTGTGTTCTAAGGTC
TATATTTCAAACCGTCTAATTTAAAAGCTTGCGCACCGTAGCCGGATGAT
CTAACTTTGCATTACGGTCGCTAACTCAAATATACAGTTGACTATCGCTA
ATTCGGAGAATGTCTTTGTTAGAATTACAGAGACATTCGAATTATAGAAA
GTATTTGAAGAGGGTCACCTCGACAACATCGATATATAACAAGAGTCGAA
CAAGAAAAAGTTAACTGTAAATACTATTTACACAGCTATAGTTAACCTTA
TCCCATCTATTTCAGCTAACGAATGGCCACCTGTCAGCGAGGAAGATTGT
TCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACCC
TCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGGA
ATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCATG
AACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTGG
GATTGAATTATCACACTCTGGAGGTATGATTTTGAATTCTAAAATCATGT
TAAAAAGATATGATAGCAACCTGACTGAACGGCGATTTGGCTTACATGAA
ATAAAAATAAATAGATATACCTAGTTAAGTACAAAGGAATTCAGACTCGT
TCCCAGTCCGTTAAATCGCTTTTCATGATCATGATTGTACAAAGCTTTAT
CAGTAATAGAATTCAAAAGTAGTACGAGTGCACATTTCAAATTCAAGAAA
AAGTTTACCATATTATCTCACAGAAAAATTGGCCAAAATATCGTCCCCGG
TTGAAAATTATCCTCCAATCTTTGTAGCCACTGAGAATAATCAAATAAAC
CAATCCTCAATTCAAAATATTATGCCAAATTTTCCCATCCCCAATGAATT
TTCTGCCTTGAAAACAAAAGAATTGAAATCCCCAGGCATAAAAAATATGG
GAATATCGATCCCCATTAAGTTTCAGTCCGTCATTTTTATCCCCACTGGC
TGAAAAAGTCATACTGAGTCTGTAAGGAGGAAGTGTTCGTCAAAGATCTG
AAAAAGTTTTAAAGGCATTATCAGATGATTTTTGATATTTGACTTAGAGA
TTCATTTCATTGTCCTAAGGAACACCAACAATTTTCAAATTTTTACTTGA
AAACAATAGAAATTCAACGTGAAGACTGTATAAAGACTCATTTTAAAAGA
TTTCACAAGTCAAATATCTCAGCTTTGGAAAAAAATTGGACCAAAAGATT
TAGAGGTGTCTCTCTGGACCATAAAATCATTTGATTCAACCGGGGACGAT
ATAGTTGTCAAGTATTCTTTGAAGCTCTATGGCCAATCCAATCCTTGTAG
GGTTTAGATTGTTAACTTTTATTACTATTATTATTATAATCCCTTTAAGT
TCTTTTACCCAGTTAATTTGAATACCATGAATTTGTCGTCAAAGAAGAAA
TTTTAAATTCATAAATAACCGATTATCTTCTGAAAAGATTTTCGAATACA
ACTTCAATCATAAGGAACTTTTTAAATTCAAATTCTCTACCATGATGAAA
GACAAATTTATATGGCGAATTTTGATTCTTAATATTTTATTATTCAGGCC
AGTTCATGTTCTCAATGGCTGACGGCAATCGAAAAACCTCAGACGGCAAG
TTACAAAAATCTTCCAAACTTGCTTGGCCAATCGATACCGAACATTGCAA
AAGACATTGCCAAAACTGTGAGAAAGACAATGGGTTAACAACAGNAAACT
TGCATGGCCAATAGATACCGAACATTGCAAAAGACATTGCCAGAACTGCG
AGAAAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGAT
ATTATGATGGTAGGTTGACTTTTTTACAGGAGCTCTAAACATTTTCTCTG
GTCTTTTCACAAGTTGAATTTCCTTAGGAAATATTTGAAATATATTTCAT
CTATCTTAAGTAAATTATACAAGATTTTCTTGAAGTAGAGGAAAAGATCA
GTGTTTGTATAATTTAGAAAAACACGTTTTGTTATTTTAAGAAGCTAGTC
TTACCAAGCAGCCGCTCAATGTTTCTTAAGAAATCGGCCTTTAGAGCCTT
AAATGTTTCTGACATGTTTCTAAACTTTTTGACATAATCAGCCTATTTTT
CAGGCAAGAAAAAAAAACGTTTTTCTTTTGATTGGAAGGTTCTTAAAAAA
ACCGAATTAAAAAATTTTCTCATTCTCAGCCTCAGCATGTTTCTTATATG
TTTCTTAGTTTTTAGGCATTCTGAGCCTCGTGTTTCTTAAAAGTGTGTTT
CTTAAAAATGAAAAAAGACGTGAAATCGACTAAAGCGACCAAACATCTTG
AATTGTGGTCATTGCTTTGTAACCTTGACTCGGAGGCCCAGATTTTGATG
CACATGCACAAGCATTATGTATCTATTTTACGTCATTTCATACGGATAAA
ATGATGCGGTTGAATAAAACTAGCTTGAAGTCAAAGGGGAAGTCTTAATT
GTTTAAATTACAAACTGCTCGAATAATAGAAACGAAAACATTTCACGGGG
GTATCCCTATGACGGGAACTGAGAATTAGCTCAAATCATTGAAAAAATAA
GAGAGTTTATTGAAAGCCTTAATGTAAGACTAAATATGTAAAGTTTTTAT
TTTTGAATTTAGGTAGGCGATAAACATACTATTAAATTGGAACGCATTTC
TGAGAAACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCAC
ATCAAGATCATTTGAATGAAGGAGATCGTGAAATCACTGGT

Coding sequence (CDS) from alignment at scaffold_36:1462646..1466286-

>TCONS_00061699 ID=TCONS_00061699|Name=TCONS_00061699|organism=Clytia hemisphaerica|type=CDS|length=3075bp|location=Sequence derived from alignment at scaffold_36:1462646..1466286- (Clytia hemisphaerica)
GCGATAAACATACTATTAAATTGGAACGCATTTCTGAGAAACAAACAATC
AACACCAAAGACTTTGGAGGATTTGAGAAAGCACATCAAGATCATTTGAA
TGAAGGAGATCGTGAAATCACTGGTATTGCCAGAACTGCGAGAAAGACAA
TGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGATATTATGATGG
TAGGCCAGTTCATGTTCTCAATGGCTGACGGCAATCGAAAAACCTCAGAC
GGCAAGTTACAAAAATCTTCCAAACTTGCTTGGCCAATCGATACCGAACA
TTGCAAAAGACCTAACGAATGGCCACCTGTCAGCGAGGAAGATTGTTCAC
CAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACCCTCCG
CTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGGAATGA
TTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCATGAACG
TGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTGGGATT
GAATTATCACACTCTGGAGATGAAGCTTTACTTCTTGATATTTACTGCAG
TTGTTTTAGTTTACGGCGATAAACATACTATTAAATTGGAACGCATTTCT
GAGAAACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCACA
TCAAGATCATTTGAATGAAGGAGATCGTGAAATCACTGGTATTGCCAGAA
CTGCGAGAAAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGG
AAGATATTATGATGGTAGGCCAGTTCATGTTCTCAATGGCTGACGGCAAT
CGAAAAACCTCAGACGGCAAGTTACAAAAATCTTCCAAACTTGCTTGGCC
AATCGATACCGAACATTGCAAAAGACCTAACGAATGGCCACCTGTCAGCG
AGGAAGATTGTTCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATG
ACCTTTGACCCTCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGA
CGTCGAATGGAATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGA
AAGGAGGCATGAACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAA
GGACGTTTTGGGATTGAATTATCACACTCTGGAGATGAAGCTTTACTTCT
TGATATTTACTGCAGTTGTTTTAGTTTACGGCGATAAACATACTATTAAA
TTGGAACGCATTTCTGAGAAACAAACAATCAACACCAAAGACTTTGGAGG
ATTTGAGAAAGCACATCAAGATCATTTGAATGAAGGAGATCGTGAAATCA
CTGGTATTGCCAGAACTGCGAGAAAGACAATGGGTTAACAACAGGAACTT
ACTGCTCAAGCGAGGAAGATATTATGATGGTAGGCCAGTTCATGTTCTCA
ATGGCTGACGGCAATCGAAAAACCTCAGACGGCAAGTTACAAAAATCTTC
CAAACTTGCTTGGCCAATCGATACCGAACATTGCAAAAGACCTAACGAAT
GGCCACCTGTCAGCGAGGAAGATTGTTCACCAGACACCAAACAAAAAGCT
ATGCATGGAAAAATGACCTTTGACCCTCCGCTTAGTGAATCCCCAATGAC
GTCATTTGAAGTTGACGTCGAATGGAATGATTTGAAGTTTCACCCAACGG
AGAATATGGAGATGAAAGGAGGCATGAACGTGGTGTACACTTTGGGAATG
AAAAATGGCCCTGAAGGACGTTTTGGGATTGAATTATCACACTCTGGAGA
TGAAGCTTTACTTCTTGATATTTACTGCAGTTGTTTTAGTTTACGGCGAT
AAACATACTATTAAATTGGAACGCATTTCTGAGAAACAAACAATCAACAC
CAAAGACTTTGGAGGATTTGAGAAAGCACATCAAGATCATTTGAATGAAG
GAGATCGTGAAATCACTGGTATTGCCAGAACTGCGAGAAAGACAATGGGT
TAACAACAGGAACTTACTGCTCAAGCGAGGAAGATATTATGATGGTAGGC
CAGTTCATGTTCTCAATGGCTGACGGCAATCGAAAAACCTCAGACGGCAA
GTTACAAAAATCTTCCAAACTTGCTTGGCCAATCGATACCGAACATTGCA
AAAGACCTAACGAATGGCCACCTGTCAGCGAGGAAGATTGTTCACCAGAC
ACCAAACAAAAAGCTATGCATGGAAAAATGACCTTTGACCCTCCGCTTAG
TGAATCCCCAATGACGTCATTTGAAGTTGACGTCGAATGGAATGATTTGA
AGTTTCACCCAACGGAGAATATGGAGATGAAAGGAGGCATGAACGTGGTG
TACACTTTGGGAATGAAAAATGGCCCTGAAGGACGTTTTGGGATTGAATT
ATCACACTCTGGAGATGAAGCTTTACTTCTTGATATTTACTGCAGTTGTT
TTAGTTTACGGCGATAAACATACTATTAAATTGGAACGCATTTCTGAGAA
ACAAACAATCAACACCAAAGACTTTGGAGGATTTGAGAAAGCACATCAAG
ATCATTTGAATGAAGGAGATCGTGAAATCACTGGTATTGCCAGAACTGCG
AGAAAGACAATGGGTTAACAACAGGAACTTACTGCTCAAGCGAGGAAGAT
ATTATGATGGTAGGCCAGTTCATGTTCTCAATGGCTGACGGCAATCGAAA
AACCTCAGACGGCAAGTTACAAAAATCTTCCAAACTTGCTTGGCCAATCG
ATACCGAACATTGCAAAAGACCTAACGAATGGCCACCTGTCAGCGAGGAA
GATTGTTCACCAGACACCAAACAAAAAGCTATGCATGGAAAAATGACCTT
TGACCCTCCGCTTAGTGAATCCCCAATGACGTCATTTGAAGTTGACGTCG
AATGGAATGATTTGAAGTTTCACCCAACGGAGAATATGGAGATGAAAGGA
GGCATGAACGTGGTGTACACTTTGGGAATGAAAAATGGCCCTGAAGGACG
TTTTGGGATTGAATTATCACACTCTGGAGATGAAGCTTTACTTCTTGATA
TTTACTGCAGTTGTTTTAGTTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038689XLOC_038689Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061699-proteinTCONS_00061699-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061699-exon-scaffold_36-1575043694:1466171..1466286TCONS_00061699-exon-scaffold_36-1575043694:1466171..1466286Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1575043694:1464914..1465171TCONS_00061699-exon-scaffold_36-1575043694:1464914..1465171Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1575043694:1463732..1463839TCONS_00061699-exon-scaffold_36-1575043694:1463732..1463839Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1575043694:1463574..1463651TCONS_00061699-exon-scaffold_36-1575043694:1463574..1463651Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1575043694:1462646..1462770TCONS_00061699-exon-scaffold_36-1575043694:1462646..1462770Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1510915933:1466171..1466286TCONS_00061699-exon-scaffold_36-1510915933:1466171..1466286Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1510915933:1464914..1465171TCONS_00061699-exon-scaffold_36-1510915933:1464914..1465171Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1510915933:1463732..1463839TCONS_00061699-exon-scaffold_36-1510915933:1463732..1463839Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1510915933:1463574..1463651TCONS_00061699-exon-scaffold_36-1510915933:1463574..1463651Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1510915933:1462646..1462770TCONS_00061699-exon-scaffold_36-1510915933:1462646..1462770Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1491911889:1466171..1466286TCONS_00061699-exon-scaffold_36-1491911889:1466171..1466286Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1491911889:1464914..1465171TCONS_00061699-exon-scaffold_36-1491911889:1464914..1465171Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1491911889:1463732..1463839TCONS_00061699-exon-scaffold_36-1491911889:1463732..1463839Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1491911889:1463574..1463651TCONS_00061699-exon-scaffold_36-1491911889:1463574..1463651Clytia hemisphaericaexon
TCONS_00061699-exon-scaffold_36-1491911889:1462646..1462770TCONS_00061699-exon-scaffold_36-1491911889:1462646..1462770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1462646..1466286 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0318812	0	0	0	0.0610044	0.0794259	0	0	0.0628076	0	0	0	17.8328	15.2003	0	0	2.71497	3.08211	29.3324	36.5086	10.9544	14.1781	12.7919	20.5159	43.3097	63.5806	0.189166	0	0	0.109672
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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