TCONS_00061836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061836
Unique NameTCONS_00061836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061836 ID=TCONS_00061836|Name=TCONS_00061836|organism=Clytia hemisphaerica|type=transcript|length=436bp
TTCTGGGGGTGTGATAAATGTAAGAGTTTGTAACTACGGTTTTCTTATGT
CTTTACTCTATGAACTTCCATATACTCTATTTCCCTAGATTAAATTATCT
CTAGGACCTGATAGCTATATCAACAGCCTTGCGCATAATGATGCCCAAGG
TGTGTTGATATTCGCTAGCATAGCTAACAGCCccgttgaaataaaaaatg
tttcacattttcttctaataaaatactacaaattttgtaaaataatctct
taaataaaacaatttctttttacTGGTACCCTAACGGTTCACAGCCTTAA
AGTATAAAATATTGATTTCTAGTGATATAATAAAATGTTAATTGAACCAT
AGTGTCAGAAAGACTTCGTCGTCGGATAGAATGAGTGTCAATTTTCAATG
CGATGGAGGGTAGCGAATTCTCATATCGTTCACTAN
Run BLAST on NCBI

transcript from alignment at scaffold_360:56089..56524

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061836 ID=TCONS_00061836|Name=TCONS_00061836|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_360:56089..56524 (Clytia hemisphaerica)
NTAGTGAACGATATGAGAATTCGCTACCCTCCATCGCATTGAAAATTGAC
ACTCATTCTATCCGACGACGAAGTCTTTCTGACACTATGGTTCAATTAAC
ATTTTATTATATCACTAGAAATCAATATTTTATACTTTAAGGCTGTGAAC
CGTTAGGGTACCAgtaaaaagaaattgttttatttaagagattattttac
aaaatttgtagtattttattagaagaaaatgtgaaacattttttatttca
acggGGCTGTTAGCTATGCTAGCGAATATCAACACACCTTGGGCATCATT
ATGCGCAAGGCTGTTGATATAGCTATCAGGTCCTAGAGATAATTTAATCT
AGGGAAATAGAGTATATGGAAGTTCATAGAGTAAAGACATAAGAAAACCG
TAGTTACAAACTCTTACATTTATCACACCCCCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038789XLOC_038789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061836-exon-scaffold_360-1491911889:56089..56524TCONS_00061836-exon-scaffold_360-1491911889:56089..56524Clytia hemisphaericaexon
TCONS_00061836-exon-scaffold_360-1510915933:56089..56524TCONS_00061836-exon-scaffold_360-1510915933:56089..56524Clytia hemisphaericaexon
TCONS_00061836-exon-scaffold_360-1575043694:56089..56524TCONS_00061836-exon-scaffold_360-1575043694:56089..56524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_360supercontigscaffold_360:56089..56524 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914285	0	0.614961	0.902666	2.58585	1.68878	2.02845	0.97298	0.463985	0.163134	0.316685	1.32808	0.829997	1.47226	0.582038	1.00737	0.705362	1.15072	0.591986	1.74734	2.65723	2.19629	0.762535	0.731852	0	0.299517	5.44325	4.40641	1.11062	2.28913
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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