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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061825 ID=TCONS_00061825|Name=TCONS_00061825|organism=Clytia hemisphaerica|type=transcript|length=733bp
CGATGATAGTAGGTACACGTTCAGCAACGACACAAAGTACGGCACCGAGA
ATTCGCTGTTCGCCATTTCAAAAGTCACATACACAGACCGTGGGAAATAT
TATTGTGTGGCTACATTTCAGAGTGGAAAATCATCTCGCCAAGAGTTTAT
ACTTCGTGTCCGAGACCCATTGGGAGCTCTCTGGCCTGCTCTTGGCATCC
TGATCGAAGCTATTCTATTGTTCCTCATCATTGGATTGTACACTTGCTTC
AAGAAGTCCAAACACCAAAACACTGACGATGTTGATGGAGCAAACCACGA
GAAATCACCCCTTGTGAAAGACGCACCTCGTGTCTCCTACACCACAGGAG
ACGAAGGAGTGAAATCACGCTTAGTGAACGATGAAAAAGCCTAACTTTCT
CCTCAGGTAttttttcaagagttttttgATGATGTTGAGCCTTTCTAGTA
ATTACGTCACATTTTGTCtcgttttcgttttcaagcaattACAAAGATGA
TCAGCTCACaagagagaaaaaaacttttaaaacactTGGACTGCAATTCT
GGGATAGAACTCTTGACACAAATTTCAATaatagttctatttatactgag
acaattaatttgtctgagacgagaaatttagaaaatgagcattatggagA
AGTGTgctttccattcatgtttcaataaataggatctcctccacagatca
cattttacaaactactcgtcTCAGACGATTTTT Run BLAST on NCBI transcript from alignment at scaffold_360:302049..308745- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061825 ID=TCONS_00061825|Name=TCONS_00061825|organism=Clytia hemisphaerica|type=transcript|length=6697bp|location=Sequence derived from alignment at scaffold_360:302049..308745- (Clytia hemisphaerica)
CGATGATAGTAGGTACACGTTCAGCAACGACACAAAGTACGGCACCGAGA
ATTCGCTGTTCGCCATTTCAAAAGTCACATACACAGACCGTGGGAAATAT
TATTGTGTGGCTACATTTCAGAGTGGAAAATCATCTCGCCAAGAGTTTAT
ACTTCGTGTCCGAGGTTAGTAATTTTTCTTCCAAACTATTTAAAATTATT
TTAATATTCCTTTTTCTTTCGGTGATTAAAACACCCTTTTTTCACTATGC
TCTTTTACAGTTATCAAATTGTGAAATTTAACTTTTTAAGAGCTTAAGGC
CGGTCTCCACTTGTGCGCGCTGCGATCGCACCTTTTGGCTTCAATCTTTT
TTGCTTGGAAAAAAGATTACGTCATAAAAATATAGCGCGCGCTCGAAAAA
AAAAGTTTCAATAATAAACTTTTTTCAACCGTTACGTTAGATCGCCCCAA
TGGAATTGTTCTATTTTTCTTTTGACCAATAACGTGGAAGCTTTGCTCGA
AAAAGTGCGATCGCACCGCACACAAGTGGAGATGACCGACCTTTAGTCTG
GATATCCAAGCTGTAAACATTTTTTTTGCGCACAGTATATGAATAGGAAA
AGTATGTATTCGCCTCTTCCTGATATTGAAATTTAAATCACTTTAACGAA
GACCAGGTGGTAAACCAGAAACATAAAAAAAAACATTTTACAGCCTGAAT
ATCACCTAGATTGTAAATACTGAACCAAATTTAAAAAGTTACAAATTAGG
AGGATTAACTCCTTAAAGAAGCCACTGGAACAAATTGCAATTTTTTTCTG
AGTGCTTAGAAAACCATGCCTAAATTTGTGCTCGTTGAGATGACTAAACC
CTACCCGAAGTCGATTTAGTAAGACTACACCTTGATTGTCGGAAACATCA
AAAAGATTGTTTGGGTCTCAAAAATTTTACAATTGCAGTCTTGAAAGTCT
TAACAGAGAAGGTAGATTTCTTGTATTACCGTCCTGGACATTCCACTGGG
ATATGCAGCGAGGAAAAAAAGTATTAAGAAAACGCTCAGTTCGTATATTA
AGAGGATAAATAGGATTTCTTGTTCTTATGTTAACTGGCTCTGTAAGCCT
TGCTGGCAGATAATTACGTAAGTAAGACGGAGCTTGGTTATTTATGATTT
TATAGAAATTTTTATGGTATTTTCTCTCCTGCCTTTATTATAGAGGTCAC
CATTCAGTTGAGAGGCCTGGTATAGGTAGAAGGTATTAACGAGTTTATGT
ATGTGTGTTTTTCAGCGACGGAGACGGTAAGGTTCCAAATTGACTAGATC
ATGACCAACTGAGGACGACGGTAAATCAGCACTTATACCGTCCTCGATTT
TGCGGGTCAGAAGTGCAGGTTTTTCCAAATCGCTTCAGTCACTAGCGAGA
TTATGTATCGGAGATATTCTACGGCTACGGTTGCGGGTCTGCCCGTGCGG
GTCGTCACCAAAGGCGACATGTCGTCGTCTACTTTTCTCTGTACGGGAAA
AACACCAAAACACCGTATGAGCAAAGTCGACATAATGCCGTACGTCAAAT
ATTGAACTTGCTTTCACCCGCCATTACTTGCCTTACTCACCATTTCCCTC
GCCACTTTAACCGTAGCCGTAGAGAATTCCAGATACATAATCTCGCTACT
TTACCGTCCTCAAAAGCGCAAATACATAAACTAAAACTGGCTATTAGCGA
GTTTATGTATTTGCACTTTTGAGGACGGTAAAGTGACTGAAGCGATTTGG
AAAAACCCACAGTTCCGCCCCGCAAAATCGAGGACAGAAAGGTGCTGATT
TACCGTCGTCTTCAGTCAGTCAGGACGTAGACAAATTAGAACCTTACCGT
CTCCGTCGCAGAAAAACACACATACATAAACTCGGTATTATTTCCTGAAA
GGCTGTGTTCAATCTCAAACCTTTTTTTTTTGTATTATTCTACAGACCCA
TTGGGAGCTCTCTGGCCTGCTCTTGGCATCCTGATCGAAGCTATTCTATT
GTTCCTCATCATTGGATTGTACACTTGCTTCAAGAAGTCCAAACACCAAA
ACACTGACGATGGTACGTTTCCTTCATCAATAGACTTTAACGGAGTTTTT
GATTTTTCTAAAAAAGCGATTGTGGGATTGTTTCGAGTGTATTACATTAG
AAATCTCTTAGGAATTCTATTGTAATGCACTCAAAACAATCCCACAATGC
ATCGCTGTTTTAGAACAATCAAAAACTCCGATAAGGTCTATTATAATCAA
TGTTCAGCAACACACGTGTTTTTCTTATAAGAAGCCTTTGCCTTATAATA
ATGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCTTTTTTTTGTATTATTCTACAGACCCATTGGGAGCTCTCTGGCCTG
CTCTTGGCATCCTGATCGAAGCTATTCTATTGTTCCTCATCATTGGATTG
TACACTTGCTTCAAGAAGTCCAAACACCAAAACACTGACGATGGTACGTT
TCCTTCATCAATAGACTTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGA
TTGTGGGATTGTTTCGAGTGTATTACATTAGAAATCTCTTAGGAATTCTA
TTGTAATGCACTCAAAACAATCCCACAATGCATCGCTTTTTTAGAAAAAT
CAAAAACTCCGATAAGGTCTATTATAATCAATGTTCAGCAACACACGTGT
TTTTCTTATAAGAAGCCTTTGCCTTATAATAATGATCTCAACAGTTTGAG
TCTTAAGCCTAAAAGTGTTCTTAAGATTTTCTTATTCTCACTATTTTTCG
ACAACACGTCTGTTTTTTTATACACATATACTCTTAATGATCTCAGTTTT
AAGCCTGAAAGTGTTCTTAAGAGTGTTCTTATTTTATTTCAATCTTATTT
TATGGAGTATTTTTGTGCAATTTCCTAAGAAATTGAGTGTTTTGAAGAGT
CTGCAAAACCTTAAAAATGTTCTTAACTTGTTCTTAATATTTCGGCTAGT
GAAGCTTTATGTTCTTGTATAGTTTGTTGTTAAAAAAAGCGTGTATTTGG
AATGGAGCATGTCAACAACATACCGGTTTTGGAGTAACTCCCCCATATTG
ATTCGGTGTAATTGACACGAAAATTCAAACAAACTAACTGGATAATTACA
TACTAAGTCATTTTTCGTTTGATATCTTTCGTGAAATTTTAACACTGATT
CAAAGCAAAAGAAAACTTCTTTCGAAATCAGTATATACTATCTGTAGTTG
TGCATTAAGCAAGTTTGACACTTGCTTTATGTTTCTTGCTCGATGTCTTT
ATATTAGCCTTCGGTGGCAAATAGACATCGAATTTTAAGAATCAAGCGAG
AGTCGAGCTTGCCTGGCACGTGATTCTAAATAATCTTTTCAAGATCAGAC
ATTCGGAATTTCTAATTTAAAACTTTATACTAAAATGCTACTAAAATTAT
TTCAAACTAAAAAGAGAGAGGAGGTGAAGAGAGGAAGAATTATATAAACT
CTCTTTTTCGGGTGGCAGAGTTACCCTTATATAATGATCTGGAAATCGAG
ACTAACATTCGACTAACCTTGTCCCCGTGTATTCCAGGCTTTATTTACAT
TACTGATGGTCGCCTGATATTATCTGGTAATACGCAGGGAACGAGGTTGA
TAATCAGCTAACAATAACACCTCTTGTTTAGGCTTGAATAAACTTTAACA
TGACATAACTGATAACCGACACACAAGTCATACCTGCATATCAATACTCC
AGGTCCTCCAGTGAACAACAATTCAAAAGCCTTTTTTTCATTGAGCATGC
TTCCCGTATACTTTAATGGGATAAATTTTCGCGGGGATTAATTTTCGCGG
ATTTCGCGGATTCGGGTGTCATCCGCGAAAATAAGTCCCATTGGAAATTT
GAAAAAGGCCCTTCCGCGAAAATTAGTTTCCGCGAAAAATTTGAATTTTT
TTTGCGATCCACGAAATTTCTATTTTTATCGTTTTTTATTTTTTTTTCTA
CATGAGGCAACCCTCGAAAAAGGTCAAATCCTCTATATGCTTGTTAGCAA
AAAAAGTTTTCCTCAAAATTTTCTTCACAAATTTCACAAACTTGGAAGTG
ATCGCTTATTGTTAAAAGNAAAGCTTTCCTCAAAATTTTCTTCACAAATT
TACAAACTTGGAAGTGATCGCTTATTGTTAAAAGCTTTTCAATGTAAGAG
GGTAATCCAACTGGCTTGAAATTAAACATTTAAAAGGATATGTAAGATTT
TTTCCCAAATAGGCTTTGAAAATTTAGCTCCACACCATGGAAGTTCAAAT
TCAACTTTTGATAGTTGTAATACATATCTCCTCGCCCTATTCAAAAACAC
CCTCTTATTACTTGAAAAAANTGATACATATCTCCTCGCCCTATTTAAAA
ACACCCTCTTATTACTTGAAAAAAAAATTCTTAATTTTCCTGGAAAAATT
TTATTTCAATGTTTTGACCCTTTTCAAAAATTTTAATTTGTACCCCAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCGAAAATTAATCCCCGCGAAATCTTAAAATTTCGC
GGATGATCTCAACCGCGAAATTTAATCCCCGCGAAAATTTATCCCATTAA
AGTAGTGCGATTTAATGAAAATTTGCATTTGCATTGCAAAATAGATGATT
TATACAAATATTTTTTTCAACGAAATGGATCTTGCATTCAGTTTTTATTT
TATTTAGATTTCACTCAGAAGTACTCAAGAAGTAGTAAATTTTTATCACC
AAACTCCAATTAATAACATTAGCTTTTTAACCAACACAGATATCTTTTAT
AAAACACTAGAAGAGCTTTTTCATCTCAGATGAAGCATACTTATATGCCA
TCTTTAATCATGCGACGTTACGTTTCTCTTCTGCACGAGCCTTAACTTCA
TATCATATGCAGCAGTCCACTAATTGTCTTAAAGTTGCTGAATCTAGTCT
TTATTAGAATGTGTTTTCTAGCCCTTCCCAGCGGGACAAAGAATCGTTGA
ACATAATAATTGATCAACATCCCTTCGTGACACATACCCAGCTGGCACAA
AACGTTGTTTCAACGTTCATCTAACGTTATATGGACGCTATGAACATTAG
ATAAACGTTGAAACAACGTTGTGTGCCAGCTGGGTTGTTCTCCTTCATAC
AGGGATCAAAGTTCTTCCGTCTCACAGAATTTCCGGATTTCCGTCTCACA
GAATTTTTTGTCAAAGTTTTCCGTCTCATTTAGAAATGGTTATTTCGCAA
GAAATATTGATTTTATTCTCTAGAATAATTCCATCGGAAAGAAATCTCGT
ATTGAAACTGTGTTGAATGGCTGATTTTACATTTTGAGTTGTTTTAATTA
ACAAATTTTAGTGCCTTTCTAACCAATCTAGGAGGTAAAAAATCTGAAAT
TTTTCTGGCCTGCGGGTGTCACTGTATACCAAAATATCTGTATTAAGAAA
TTTTCCGTATCACAGAAAAAAAGTGCATTGACCTTCCTTCATAGACACAT
GTTTATTCTTTTAGTTGATGGAGCAAACCACGAGAAATCACCCCTTGTGT
AAGAAAACTTCATTCACCTCATCCAATACCACCCTCTATCCGCCCACCTT
TCATCTACCACCCTTTAATTATCGCCCGTGATCTCGCTTTCATACAATCA
TTCAATTAGATTTCACCTCAAATCACGTCGTCTACTCACCATCTAATCGT
CGCAAAGCGTAATGGGTAATCAGGAGCACTGCGCGCTAATGACAAATTAT
TATTGGTCCAAAGTTTTAAAAGATTTTGAAGATTTTTGCGTCTAGCCAAC
ATAAAAACATTATGGGGGTGCAATCAGTCCTGATTACTCATGATCCATTT
CGACTGTGAAATTGCCTGTAGGGAAACTATGCCTCATATTTTATTAAAGT
AGAGACTGTCATACTGAAACTTCAATAAACTGATGTCTTAGATTACTGGG
CTATCTGACTTTACCGATTAGACGCGCACCAATAAATGACCCTTGAACTT
ACCTGACTTACCTTACTCATCTGGGAATCTATATAACATTGACAAAACTG
ACTGACAAACTTACATACTTTTTACGTGATGGCTTTTCATAACATTCTTA
CCTAAACGTTCTTTTTGTTTTGCTTACAGGAAAGACGCACCTCGTGTCTC
CTACACCACAGGAGACGAAGGAGTGAAATCACGCTTAGTGAACGATGAAA
AAGCCTAACTTTCTCCTCAGGTATTTTTTCAAGAGTTTTTTGATGATGTT
GAGCCTTTCTAGTAATTACGTCACATTTTGTCTCGTTTTCGTTTTCAAGC
AATTACAAAGATGATCAGCTCACAAGAGAGAAAAAAACTTTTAAAACACT
TGGACTGCAATTCTGGGATAGAACTCTTGACACAAATTTCAATAATAGTT
CTATTTATACTGAGACAATTAATTTGTCTGAGACGAGAAATTTAGAAAAT
GAGCATTATGGAGAAGTGTGCTTTCCATTCATGTTTCAATAAATAGGATC
TCCTCCACAGATCACATTTTACAAACTACTCGTCTCAGACGATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061825-exon-scaffold_360-1575043694:308582..308745 | TCONS_00061825-exon-scaffold_360-1575043694:308582..308745 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1575043694:306253..306369 | TCONS_00061825-exon-scaffold_360-1575043694:306253..306369 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1575043694:303048..303081 | TCONS_00061825-exon-scaffold_360-1575043694:303048..303081 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1575043694:302049..302466 | TCONS_00061825-exon-scaffold_360-1575043694:302049..302466 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1510915933:308582..308745 | TCONS_00061825-exon-scaffold_360-1510915933:308582..308745 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1510915933:306253..306369 | TCONS_00061825-exon-scaffold_360-1510915933:306253..306369 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1510915933:303048..303081 | TCONS_00061825-exon-scaffold_360-1510915933:303048..303081 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1510915933:302049..302466 | TCONS_00061825-exon-scaffold_360-1510915933:302049..302466 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1491911889:308582..308745 | TCONS_00061825-exon-scaffold_360-1491911889:308582..308745 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1491911889:306253..306369 | TCONS_00061825-exon-scaffold_360-1491911889:306253..306369 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1491911889:303048..303081 | TCONS_00061825-exon-scaffold_360-1491911889:303048..303081 | Clytia hemisphaerica | exon |
| TCONS_00061825-exon-scaffold_360-1491911889:302049..302466 | TCONS_00061825-exon-scaffold_360-1491911889:302049..302466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:302049..308745 - |
Blast
The following BLAST results are available for this feature:
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