TCONS_00061965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061965
Unique NameTCONS_00061965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061965 ID=TCONS_00061965|Name=TCONS_00061965|organism=Clytia hemisphaerica|type=transcript|length=492bp
AAGGATTTGAAGGGGATCTTTGTGAACAAGATAAAAGGATGCAAAACTGC
TTAGCAGAATGTGGGAAGAATTGTACAAACGACAATATGGATAACGGGAG
CAACCAAAAATACAGTTGTATCCATGCTTGCAAGATGAGGGAGATCGGAT
TAGACGAAGCAACATGGAAAGAGAATTGTCAACGAGATGGAGGATCAGGA
TGCAGTCCTATCATTCTTGGTTATCAATTCAACTTATGTGGCACCATTGG
TAACTCAGATCCTTTTTGTACTCCTGATAGAGATCCACCGGTCGAAGAAT
GTGAACTTGGTTGTGCAAGCTTTTTGTGACTTTTGATTAGAAAAATGACC
CCCTAGAAACTCCTTCTTATTTACCAGGAATTTTGCTTCCCGCTGATTCA
CACTTTTTCTCGTACAATATTTTGTTTATACTTTTCTTGTTCAGAGTTTT
CTCTATTTTCCTCGTCTAAAGGCTCGaaaaatatgacgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00061965-protein

>TCONS_00061965-protein ID=TCONS_00061965-protein|Name=TCONS_00061965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
GFEGDLCEQDKRMQNCLAECGKNCTNDNMDNGSNQKYSCIHACKMREIGL
DEATWKENCQRDGGSGCSPIILGYQFNLCGTIGNSDPFCTPDRDPPVEEC
ELGCASFL
Run BLAST on NCBI

transcript from alignment at scaffold_361:47902..48700-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061965 ID=TCONS_00061965|Name=TCONS_00061965|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at scaffold_361:47902..48700- (Clytia hemisphaerica)
AAGGATTTGAAGGGGATCTTTGTGAACAAGGTAAGAAGTTGATAAGCCTG
ATAAGACTTGCAAGTAGCTTGGAAACAGGCGAATGTCAAAGAGATGTATA
TGTGCATGTGGGGTACGAAAGTCTAACTTTCGAAAATTTCCATTATAACT
AGATTCTGGATATTCTTAAAAATAATNAAGCAAAAATCATCTTCCAAAGT
ATTTAGAAAGTTTCGGAATATGAAATTTCAACATATTAGGAAGTTAGGAA
TTTAATTTTTCAAGCCTGTATGAAAGTTTNATCTTTCAACCAAGTCTCAT
TTCATAGCTGATCTTACTTCAGCGAATATATTTACAGATAAAAGGATGCA
AAACTGCTTAGCAGAATGTGGGAAGAATTGTACAAACGACAATATGGATA
ACGGGAGCAACCAAAAATACAGTTGTATCCATGCTTGCAAGATGAGGGAG
ATCGGATTAGACGAAGCAACATGGAAAGAGAATTGTCAACGAGATGGAGG
ATCAGGATGCAGTCCTATCATTCTTGGTTATCAATTCAACTTATGTGGCA
CCATTGGTAACTCAGATCCTTTTTGTACTCCTGATAGAGATCCACCGGTC
GAAGAATGTGAACTTGGTTGTGCAAGCTTTTTGTGACTTTTGATTAGAAA
AATGACCCCCTAGAAACTCCTTCTTATTTACCAGGAATTTTGCTTCCCGC
TGATTCACACTTTTTCTCGTACAATATTTTGTTTATACTTTTCTTGTTCA
GAGTTTTCTCTATTTTCCTCGTCTAAAGGCTCGAAAAATATGACGAAAA

Coding sequence (CDS) from alignment at scaffold_361:47902..48700-

>TCONS_00061965 ID=TCONS_00061965|Name=TCONS_00061965|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_361:47902..48700- (Clytia hemisphaerica)
ATAAAAGGATGCAAAACTGCTTAGCAGAATGTGGGAAGAATTGTACAAAC
GACAATATGGATAACGGGAGCAACCAAAAATACAGTTGTATCCATGCTTG
CAAGATGAGGGAGATCGGATTAGACGAAGCAACATGGAAAGAGAATTGTC
AACGAGATGGAGGATCAGGATGCAGTCCTATCATTCTTGGTTATCAATTC
AACTTATGTGGCACCATTGGTAACTCAGATCCTTTTTGTACTCCTGATAG
AGATCCACCGGTCGAAGAATGTGAACTTGGTTGTGCAAGCTTTTTGTGAG
GATTTGAAGGGGATCTTTGTGAACAAGATAAAAGGATGCAAAACTGCTTA
GCAGAATGTGGGAAGAATTGTACAAACGACAATATGGATAACGGGAGCAA
CCAAAAATACAGTTGTATCCATGCTTGCAAGATGAGGGAGATCGGATTAG
ACGAAGCAACATGGAAAGAGAATTGTCAACGAGATGGAGGATCAGGATGC
AGTCCTATCATTCTTGGTTATCAATTCAACTTATGTGGCACCATTGGTAA
CTCAGATCCTTTTTGTACTCCTGATAGAGATCCACCGGTCGAAGAATGTG
AACTTGGTTGTGCAAGCTTTTTGTGAGGATTTGAAGGGGATCTTTGTGAA
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038846XLOC_038846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061965-proteinTCONS_00061965-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061965-exon-scaffold_361-1575043694:48671..48700TCONS_00061965-exon-scaffold_361-1575043694:48671..48700Clytia hemisphaericaexon
TCONS_00061965-exon-scaffold_361-1575043694:47902..48363TCONS_00061965-exon-scaffold_361-1575043694:47902..48363Clytia hemisphaericaexon
TCONS_00061965-exon-scaffold_361-1510915933:48671..48700TCONS_00061965-exon-scaffold_361-1510915933:48671..48700Clytia hemisphaericaexon
TCONS_00061965-exon-scaffold_361-1510915933:47902..48363TCONS_00061965-exon-scaffold_361-1510915933:47902..48363Clytia hemisphaericaexon
TCONS_00061965-exon-scaffold_361-1491911889:48671..48700TCONS_00061965-exon-scaffold_361-1491911889:48671..48700Clytia hemisphaericaexon
TCONS_00061965-exon-scaffold_361-1491911889:47902..48363TCONS_00061965-exon-scaffold_361-1491911889:47902..48363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:47902..48700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.122249	0	0	0	0	0	0	0.105641	0.654267	0.889067	0.0834911	0.16675	0	0	0	0	0	0	0.768243	0	0.177363	0	0	0.134597	0.120124	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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