TCONS_00061971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061971
Unique NameTCONS_00061971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061971 ID=TCONS_00061971|Name=TCONS_00061971|organism=Clytia hemisphaerica|type=transcript|length=3207bp
AAATTTAAGAGATTACTTCACGGATTTTGGAAGCCCGGGTAGAGGATTTT
CAACCAAAGATTTACTGAAAATAAGCCTTACACCAAGTTAAGGTAATTAT
CGAAACAGTTTAATGGGTTGTGTACGGGAAACATATTTGTGTAATAGTGA
TTGGAGTTTGCGGTGGGAGTGTTTTTGCATGATGCAAATTAGAGGATGTA
AATTTAGGTCCATGCAGTTTCGCAAGTCGGTAGGTGTCCTTTTAAATGAA
GCTTCTTTATAAGATGTTTAATTTCTATTGATCCGATGGCAATTAAATAA
ATCCGACCGCTTTAATTGTCAAATTTTCTGTCAAGATTAAGAAATGTTAT
AAGAATTGTACTGAGGTTATTAATTCATAAAGTGACTCAGATTAGCCCAA
AAAAAAAGATCTTACCAAGAAAACATTTAAGTCATGATAAGTTATGATTC
GAAtgagaaaaattttataagaatagttgCCAAGATATAGATAGATTTCT
CCCCGGAACCGGTAAAcagtttcttacaaaaaaacacGAGGATTTCTTTG
AAAGAAGAGTACGTCATCCCCCTTTCGAAACATAATGAATAGCTTCGTGT
TTTCAAGCATTTTGACATCGAGAAGAGGAAGATAGTATCTGTCAGCACAA
CTATACTCAGTCAAGAACCATTGACACACAAACACTTGGTATAAATGTTG
AAGCAGAGTTAGTtagttgaatatgtttttacagaaaaatgaaaactcag
atttcaTAACAGAAGAAGAATTGACACAGTGAATTTGTTGACTCAGCTAC
AACAACTTGTGGAGGTCTataaagtcaataaaaaaatatcaattctaGCT
CAGATAGCACAAAAGCTGACATTTTGAGCAGGAGCTGGTTAACATATCGT
TCCACAATAAGCATAAGATAACAGGAAGAGTGCTTAATCTAATCTCAGTC
CAGGAATATATATTGACGCCTTGTTTTTAAGCATGGGCATAACATCAACA
TGACAAGGAAGTTGCggtgaaaagaaaacaacaaatatATAAAGAAAATA
ATACATCAGAGATTATTTGGTTGAGATTGAGTCAACATGGGTCTCGTGGA
AAcaTTGATTATTGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATCCTCC
TGGTCCTTATTTTATGGAAATATGTGAAAAACATACGAAAAAGCAAAGAT
GGTAAATTTTACAAAGGCGTGAAGACTTTCCCATCCATGGATGAAGATGA
TGGTGTGGATGTGGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCACAGC
TGCCAGTGGAACCGTATGACCCCAAGgctttggACGATCCAAAACTTACA
CCAAGTTCACGTCGTAAAGACTACTCCAAAAAACCAGTCAACCCGAAGAT
CAGGAaactaaaaaagacaaaaaacatGTCCCGCTCTCTGAACTCTCTGG
ACGTGATCGGTAAAAGCGAAGAGATCGATCTTGGCAGTGATCATTTGAGT
ATAACTACTGATGAGACTATGAATCGTAGTAGAAGGAGGTCTTATGGTAG
TGACATCTCGGACGTTTCTTGTACGTCAGCAAGATGTATCAAACAAGAGA
AAATTAACACACAAATGATGGAGAGTTTGAGGAATGGAAAACGCAAAGAT
TCGACGATGTCAATTAGCCCTAAATACAATAACGGTCGACTATCGTTGGG
AAATGTTGGTCGAAACTCCACAGATGGTGGTCCAATAAAGTCTCCTCTTG
CAAACGAACCAGGTCGAATGTCTTTAGATATTGGGAGAAACTCACCTCTC
GTGAAAAAAAAGTGGATCTCATTAGACGATGCACCGATGAGCGCCGATAA
CCTTTCAGAATATGGTTCAGATTTTGGTGGATCTTCCATAGCACTGGATG
AGTCTAAATCAGGATCCTCAAATATCAGGAGACGTTTCGCTCAAACCAGA
AACAGTAATCGAAGCTTCGAATATAAAATTGTCGGGAATTTAATCGTATC
GGTGGAATATAAAGAATCAGATAATAAACTTACTTTATGGATTCATCGTG
CGTCCGGCTTAGGTGGTGACCGTAGGGAAGATCCGGAAATCAGTTCGTTT
GTCCGGATGTACCTGATACCGGGcaagaaacaaaaacaagagAGTTCAGT
AATACGCGGTGCGAAAGATCCACATTATGAAGAAACTTTTACTTTTAATA
ACATTATACCGAGTGAACTGTCAGCACAGAAATTACGATTTAAAGTGTAT
AATTCACCTTCATTCAGCGTCAAAAACGAGCTGTTAGGAGaagcaaatat
ttttttgagcaCTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTGGATT
TACTGAAGNGggagaaggaaatatttttttgagcaCTTTGAAAAGCGATG
ATAAAGAAGTTTTCCATTTGGATTTACTGAAGAAAAAGTCGAAGATTTCT
TCAGCTTCCGTAGAAATCAGTCTTTGTCACCAAGGAACATACTCCAAACT
GGAAGTCATCATCCACCAAGCAAAAAATCTAGTGCGAAAATCAAACGCTA
TGATCAatcCATACGCCAAGGTCTCGTTTTACAAAGACGGCTCCGTGGAA
ACAAAAGAAACTACACATCAGACAAACGAACGAAATCCCATATTCAATGA
ATCGCTCGATTTCAACGCCAACACAGACGTAGGATCACCATTGACTACGT
ATTCTTTAGTCGTTACCATAATGCATCACTCCATATTACGGAAAGACAGT
CCCATTGGTCACGTGATATTTACGTTGAACTCACCGCAAGAAACAGcgga
aaaacatttcaaaatggcggaaaaTGACCCGCATCGTCGGATCACAGAAT
GGCACAAGCTAATAGATCCGGATGATGTGTGAAAACGATTTTGGAATTTG
GTTAaccatttttatcatgtttcTCGGGATGAAAATTATCTCAaattcaa
gaaatgaaaaaataagtttggatagaattctttaaatttCTTACCGGCAA
CTTACCAATAAAATATCGTCTAGTGGGTTGTACAGCATGGTAGAGTCTCA
TTTTTTTTCCAGTTGTTATATTTCCTCATGATTGGTTAGTATGTAATTAT
TGTTTGTATTCAATTGTTAATTAATctatctgaaaaataaaatcaatttt
ggatTCAAATGTGAATAGTCTTATGAGGTAAAAAGATACAAAAGATTATA
ATTAATA
Run BLAST on NCBI

transcript from alignment at scaffold_361:136908..143303-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061971 ID=TCONS_00061971|Name=TCONS_00061971|organism=Clytia hemisphaerica|type=transcript|length=6396bp|location=Sequence derived from alignment at scaffold_361:136908..143303- (Clytia hemisphaerica)
AAATTTAAGAGATTACTTCACGGATTTTGGAAGCCCGGGTAGAGGATTTT
CAACCAAAGATTTACTGAAAATAAGCCTTACACCAAGTTAAGGTAATTAT
CGAAACAGTTTAATGGGTTGTGTACGGGAAACATATTTGTGTAATAGTGA
TTGGAGTTTGCGGTGGGAGTGTTTTTGCATGATGCAAATTAGAGGATGTA
AATTTAGGTCCATGCAGTTTCGCAAGTCGGTAGGTGTCCTTTTAAATGAA
GCTTCTTTATAAGATGTTTAATTTCTATTGATCCGATGGCAATTAAATAA
ATCCGACCGCTTTAATTGTCAAATTTTCTGTCAAGATTAAGAAATGTTAT
AAGAATTGTACTGAGGTTATTAATTCATAAAGTGACTCAGATTAGCCCAA
AAAAAAAGATCTTACCAAGAAAACATTTAAGTCATGATAAGTTATGATTC
GAATGAGAAAAATTTTATAAGAATAGTTGCCAAGATATAGATAGATTTCT
CCCCGGAACCGGTAAACAGTTTCTTACAAAAAAACACGAGGATTTCTTTG
AAAGAAGAGTACGTCATCCCCCTTTCGAAACATAATGAATAGCTTCGTGT
TTTCAAGCATTTTGACATCGAGAAGAGGAAGATAGTATCTGTCAGCACAA
CTATACTCAGTCAAGAACCATTGACACACAAACACTTGGTATAAATGTTG
AAGCAGAGTTAGTTAGTTGAATATGTTTTTACAGAAAAATGAAAACTCAG
ATTTCATAACAGAAGAAGAATTGACACAGTGAATTTGTTGACTCAGCTAC
AACAACTTGTGGAGGTCTATAAAGTCAATAAAAAAATATCAATTCTAGCT
CAGATAGCACAAAAGCTGACATTTTGAGCAGGAGCTGGTTAACATATCGT
TCCACAATAAGCATAAGATAACAGGAAGAGTGCTTAATCTAATCTCAGTC
CAGGAATATATATTGACGCCTTGTTTTTAAGCATGGGCATAACATCAACA
TGACAAGGAAGTTGCGGTGAAAAGAAAACAACAAATATATAAAGAAAATA
ATACATCAGAGATTATTTGGTTGAGATTGAGTCAACATGGGTCTCGTGGA
AAGTAAGTACCATTTTAATTCCTTCCAAAAAAGTTATATGCTTGCCGATC
AGCAAAATATGTACGCAAGTTACTAAAACTTACAACCCCAGTATTCACTT
CCAACAAATTAAGTAACAAGCTCATTACTGTATTATATTTTTATTGTCTG
GGTATAGTAATAAGCTAAAGTTTGAATTTTTTGGAATAAAGGGGATAATT
TAAAGCCTTCATGGCCAAAATTTGAAATTCAAACTGCTTTGTTGGCCCTT
TTGCCAAGACTGATTCTACTTAGCGTTTGAGTTATGGAGACTCGGCTGTC
CTGGTTTTGTTTCCGTATCATATTTAAGAGTGATAACCGCTTGGTTTATT
TCAGTTTTTTTTTAATTTCAGCATTGATTATTGTGTTCGGTGTTCTATGT
GGCTTCTTCTTGATCCTCCTGGTCCTTATTTTATGGAAATATGTGAAAAA
CATACGAAAAAGCAAAGATGGTAAATTTTACAAAGGCGTGAAGACTTTCC
CATCCATGGATGAAGATGATGGTGTGGATGTGGGACCAAGAGTGGAGTGG
AATTTCGTGGCTCCACAGCTGCCAGTGGAACCGTATGACCCCAAGGTGAG
AAATCATTATCATGTTATTGAATGAGTAGTAACCTATATAGTTCGATCCC
TTACTGTTTGCTTCAAGTGGCTTACCAGGACTTTCTTAAATTGTCATAAT
TATCTCCTAAAACAACAGTTTATTGATATTGAGCGAAAAAAGAAGTTACA
GATTGGAAATCTATAGAGGCGATCCCTTACGCAAATCGAACGGTTGCTTC
CATAATGGCGGAATTTGCGTAACTTAACAAAGCATGCCTCTAAACTGCAT
CTTTTTTAGGCTTTGGACGATCCAAAACTTACACCAAGTTCACGTCGTAA
AGACTACTCCAAAAAACCAGTCAACCCGAAGATCAGGAAACTAAAAAAGA
CAAAAAACATGTCCCGCTCTCTGAACTCTCTGGACGTGATCGGTAAAAGC
GAAGAGATCGATCTTGGCAGTGATCATTTGAGTATAACTACTGATGAGAC
TATGAATCGTAGTAGAAGGAGGTCTTATGGTAGTGACATCTCGGACGTTT
CTTGTACGTCAGCAAGATGTATCAAACAAGAGAAAATTAACACACAAATG
ATGGAGAGTTTGAGGAATGGAAAACGCAAAGGTGAGTTTTGAATGTTGTT
TTAATGTTCATTTAACGTCATTTGGATGTCCACAATGTGTCCGTAAAAAA
AGCAGAACAGAATTTATATAAATAAAAATCCTGGTCATTTTTGTGGCTTT
TTTTCAATGTCACGATCAACGCTTACCTGGTTTTCCAAATATTGGGAGCG
TACGTGATATTGGTACATCGGTATTGGTCTTTTTTTAGATCTGTAAATCG
GTATTACGGAAAACAATAAATCAATATTTCAAGAGCATCTCGGTATCGGT
AAAAGACTCATTTTTATATCGGTATTTCGGTATTTTCGGTCTACTATCGG
TATCAAAGATCATGTGAAATCAAAAAATCATGTTTCATCATTGAAATTTT
TAAGAGATACAAGGGAAAGGGAGTCTAGAAAATCTGCATATGAATGTTGA
TACAAAATATTGAAATCAATCGGTATCGGCATTTGGGCGAAAAAGTTATC
GGTATATCGGTAATCGGGGTAAAAAGTGCCGTTGTGCCATAAGTGATCGG
TATAATGAAGTGCCGTACGCCCCCACTATATTGATTGCTATGGCATTTGA
TTCATAGAGGAGTCCATATAAAAGTAACACGTTATGGGATTTAATTACCT
TGGGAATGGTTTCAAACCGAGGTAGTTGTTGTACTTAAAATAATATTACC
TTGAGAATTGAATATCTATTGCTAGAACACAGAAATTCCATCTTATCTCA
ATATTTTGAACACCAATGAGATAATAATGAGTTTTAAGGATTTCAATTAA
TCTGTCCCGCTTTTTCCGGACACACTGTAAGGTAGCTAATAGAACTCCCC
CTAAGCAAAGGAGGGAAATAAAAGGAAGCTCCCAAAAACGCCCTTCCTAC
TTGCCAAAGAATCCGATAAATTGTACTTAAGTCATCATCACTGCCAATTG
AAACTAAAGATGGTGGGTTAGGAGTGCAATTAAGCGATTAAATAAAACAA
AGTTTCATTGAACAACATAAATCGTAATTTGTAATATGTCGTTCTTTGAT
AGTTAGGGTTAGGGTTAGAGATTGTCGTTCTCTTTGTCGCTTTTTAATAG
TTATTTGTCCTTCTTTTTAGATGGTCTGGAAACACGTTACATGAACAGGC
TCTTAATATCCGCTCTGACAAATTAATGAGGGAATTACTATCATCTTTAA
AAGACAGTTAACATCCTTTAATGATTCTAGTTTCCAGACTTCCTGGGGTT
TCGTTTAGCTCATTGACTTCCAAGCCTGAAGCGCTAGAGACGAGACTCCT
GGATGGGAAATGAACCCACTTATTTCCCATCTAGAACACCCGCGCATAGT
TTTTACACAAACGTCGGATTAAAACTAAAATCTATTGCTATATTTCAAAA
AATGTAGTCCTCCAAAACAAAGGAACCGGTAGATACAATCCATTGTCTTG
ATTACGGCGCGTTTTGGATGGGAAATAAGTAGCTTCAATTTCTCTTGCCT
GAGAAGAGTTAAAGTTTCGCCTCTAACCCTTAGCGCTTTACACTTCTGAA
ACCCTTCCCACCCTCCGTACAAAGATGCGATGATTTCTTTTTGTGATTAT
GATGAGAACAAAACGTATTTGAAGGCAATACAAGGGGAGAATACTTGATA
GGCCAAGATTTATTTGGACACTTTCAATAAAAATAATCCTTATTTTGTTT
CCTTATTAGATTCGACGATGTCAATTAGCCCTAAATACAATAACGGTCGA
CTATCGTTGGGAAATGTTGGTCGAAACTCCACAGATGGTGGTCCAATAAA
GTCTCCTCTTGCAAACGAACCAGGTCGAATGTCTTTAGATATTGGGAGAA
ACTCACCTCTCGTGAAAAAAAAGTGGATCTCATTAGACGATGCACCGATG
AGCGCCGATAACCTTTCAGAATATGGTTCAGATTTTGGTGGATCTTCCAT
AGCACTGGATGAGTCTAAATCAGGATCCTCAAATATCAGGAGACGTTTCG
CTCAAACCAGAAACAGTAATCGAAGCTTCGAATATAAAATTGTCGGGAAT
TTAATCGTATCGGTGGAATATAAAGAATCAGATAATAAACTTACTTTATG
GATTCATCGTGCGTCCGGCTTAGGTGGTGACCGTAGGGAAGATCCGGAAA
TCAGTTCGTTTGTCCGGATGTACCTGATACCGGGCAAGAAACAAAAACAA
GAGAGTTCAGTAATACGCGGTGCGAAAGATCCACATTATGAAGAAACTTT
TACTTTTAATAACATTATACCGAGTGAACTGTCAGCACAGAAATTACGAT
TTAAAGTGTATAATTCACCTTCATTCAGCGTCAAAAACGAGCTGTTAGGA
GAAGCAAATATTTTTTTGAGCACTTTGAAAAGCGATGATAAAGAAGTTTT
CCATTTGGATTTACTGAAGNGGGAGAAGGAAATATTTTTTTGAGCACTTT
GAAAAGCGATGATAAAGAAGTTTTCCATTTGGATTTACTGAAGAAAAAGT
CGAAGGTAGGCTCATATTTGAATAAATGAAAACAGCCGATAGACAGTCTT
AAAGTCCTGGATCACGAGGCTATTAACGTTTAATATCCACTCTACCTAAT
TACTAAGTCCTCACTCTGTCTCACTTAACATGATGTCAATAAATACCTAT
CGATATTTTGTTGAAGTTTAAAGGGAGATTTTTCAATTCAAACGATACAT
CAACTTCGTTTGTAAGATGTTTCTCATTGACTTTATCATAATAGATCATA
GCGTAAACATTGGTTGAGGGCCAGCGTGGGAAAAATTAAACATGGTGCAA
AAACAATAAATGGGCGGAGGCATGTTATGGGGTTGTTGTCACATAAACTT
TTAACATAGAACATATGTTACTTTTCCCAATTTCTCAAAAATGTTCAAAC
ACAAATTTGTGCGGGATAAGGAAATTTCGATTAATGGTGTTAAGGTTTAT
AAGATGTTGCTAACTAAAGGGGTCATAAAACTTATTCGAGATAAGGAGAC
ATTCGAGTTAAAGGGACTCCACTATATAGGCAAACATACATAAATACCTT
TTACCAACTCTCTATCTTCTCGTTTGCAGATTTCTTCAGCTTCCGTAGAA
ATCAGTCTTTGTCACCAAGGAACATACTCCAAACTGGAAGTCATCATCCA
CCAAGCAAAAAATCTAGTGCGAAAATCAAACGCTATGATCAGTAAGTTAA
AGGGAACAAATTTTAGACTTAGCTTTCTCACTTTCAATTATAAGCTTTTT
ATTTTTTAACCAATAACTGGTTAGGCTGCTGGCATCCACTAACGGATTCG
TGCTCCTTATTTTGTAGAGGTCTGGGATTCAGACTAATAACTGGATAGCC
TTTCTCTCCAAAAATCGGTAATTCGAATAGAATCAAAGCCTCTGCCAGGA
GAAATCATCCTTCAAGACAGATCGTCTTTGAAAGACAAAACTTCCTCATC
TTATTGGTGGTTCGGAGGGTTTCTATGTCATTTTTTCTTTAACAGATCCA
TACGCCAAGGTCTCGTTTTACAAAGACGGCTCCGTGGAAACAAAAGAAAC
TACACATCAGACAAACGAACGAAATCCCATATTCAATGAATCGCTCGATT
TCAACGCCAACACAGACGTAGGATCACCATTGACTACGTATTCTTTAGTC
GTTACCATAATGCATCACTCCATATTACGGAAAGACAGTCCCATTGGTCA
CGTGATATTTACGTTGAACTCACCGCAAGAAACAGCGGAAAAACATTTCA
AAATGGCGGAAAATGACCCGCATCGTCGGATCACAGAATGGCACAAGCTA
ATAGATCCGGATGATGTGTGAAAACGATTTTGGAATTTGGTTAACCATTT
TTATCATGTTTCTCGGGATGAAAATTATCTCAAATTCAAGAAATGAAAAA
ATAAGTTTGGATAGAATTCTTTAAATTTCTTACCGGCAACTTACCAATAA
AATATCGTCTAGTGGGTTGTACAGCATGGTAGAGTCTCATTTTTTTTCCA
GTTGTTATATTTCCTCATGATTGGTTAGTATGTAATTATTGTTTGTATTC
AATTGTTAATTAATCTATCTGAAAAATAAAATCAATTTTGGATTCAAATG
TGAATAGTCTTATGAGGTAAAAAGATACAAAAGATTATAATTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038850XLOC_038850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061971-exon-scaffold_361-1575043694:142202..143303TCONS_00061971-exon-scaffold_361-1575043694:142202..143303Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1575043694:141609..141832TCONS_00061971-exon-scaffold_361-1575043694:141609..141832Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1575043694:141023..141344TCONS_00061971-exon-scaffold_361-1575043694:141023..141344Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1575043694:138549..139344TCONS_00061971-exon-scaffold_361-1575043694:138549..139344Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1575043694:137863..137974TCONS_00061971-exon-scaffold_361-1575043694:137863..137974Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1575043694:136908..137558TCONS_00061971-exon-scaffold_361-1575043694:136908..137558Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1510915933:142202..143303TCONS_00061971-exon-scaffold_361-1510915933:142202..143303Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1510915933:141609..141832TCONS_00061971-exon-scaffold_361-1510915933:141609..141832Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1510915933:141023..141344TCONS_00061971-exon-scaffold_361-1510915933:141023..141344Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1510915933:138549..139344TCONS_00061971-exon-scaffold_361-1510915933:138549..139344Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1510915933:137863..137974TCONS_00061971-exon-scaffold_361-1510915933:137863..137974Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1510915933:136908..137558TCONS_00061971-exon-scaffold_361-1510915933:136908..137558Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1491911889:142202..143303TCONS_00061971-exon-scaffold_361-1491911889:142202..143303Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1491911889:141609..141832TCONS_00061971-exon-scaffold_361-1491911889:141609..141832Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1491911889:141023..141344TCONS_00061971-exon-scaffold_361-1491911889:141023..141344Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1491911889:138549..139344TCONS_00061971-exon-scaffold_361-1491911889:138549..139344Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1491911889:137863..137974TCONS_00061971-exon-scaffold_361-1491911889:137863..137974Clytia hemisphaericaexon
TCONS_00061971-exon-scaffold_361-1491911889:136908..137558TCONS_00061971-exon-scaffold_361-1491911889:136908..137558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:136908..143303 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0431866	0.0525755	0.0830918	0.501233	1.3139	1.80693	3.21483	0.355487	2.41473	2.28173	1.91183	0.265654	0.546418	0.380472	0.26998	0.994645	1.38777	0.150778	0.165474	0.134104	0.203199	0.0837162	0.56036	0.32075	0	0.043272	0.0440873
Blast
[Close]
BLAST of TCONS_00061971 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3)

HSP 1 Score: 60.8474 bits (146), Expect = 8.545e-20
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 3 
Query: 2475 CHQGTYSKLEVIIHQAKNL-VRKSNAMINPYAKVSF-YKDGSVETKETTHQTNERNPIFNESLDFNANTDVGSPLTTYSLVVTIMHHSILRKDSPIGHVIFTLNS-PQETAEKHFKMAENDPHRRITEWHKL 2861
            C+  + + + V I +A+NL         +PY KV   YKD  VE K+T       NPIFNES  F+  T+    L   ++++T+M    L ++  IG +  +  S P E   KH+K     P + + +WH+L
Sbjct:  275 CYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTE---KLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV--KHWKDMIARPRQPVAQWHQL 401

HSP 2 Score: 56.225 bits (134), Expect = 8.545e-20
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 1 
Query: 1981 VGNLIVSVEYKESDNKLTLWIHRASGLGGDR---REDPEISSFVRMYLIPGKKQKQESSVIRGAKDPHYEETFTFNNIIPSELSAQKLRFKVYNSPSFSVKNELLGEANIFLSTLKSDDKEVFHLDL 2352
            +G +  SV Y   ++ LT+ I +A  L         DP    FV++YL+P KK K E+ V R   +PH+ ETF F      ++  + L  +V +   FS +N+ +GE +I L+ +     + F  DL
Sbjct:  136 LGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDP----FVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS-RNDPIGEVSIPLNKVDLTQMQTFWKDL 257
The following BLAST results are available for this feature:
BLAST of TCONS_00061971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT78.545e-2031.82Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3[more]
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