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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062001 ID=TCONS_00062001|Name=TCONS_00062001|organism=Clytia hemisphaerica|type=transcript|length=2533bp
TGCGATAGACCACGAGAAATGTGTTCAAACAATATTTCCTCAAATAATTA
TGGCACTTATTTTTGGTAACACCACGCTCTTTCACTGTGGCGCTTATAAA
AGGGAAGCGCTTGACAACAAAGAATGAGATCATCAGAGAATGAAAACAGT
CGTGACACTATTCATGGGAGCCATCCTGGCTGAACAAAGATAGCTTAATC
CTTCGTATAAACACTGCATAAATTATCTATTCCAGGAATGATGAACGCCG
TCACGTTATGTTTGATGCTTTTCATTGCATCAGGCGCAGGCGTAGACATT
GCATATCGACAAACAGACGATTACCAGTTAATATGGTCTGACAAAGAATC
AAAAGGCGACAAAGATGGTTCAATATGGAGAGTGAAAAATTTCCAGACTG
GCTTTTGCTCTTTGGGGGATGTTGCGAAAGGAAGTCATAGTCGTCCCAAC
GTCAAAGCTTTACTCGTCACTGCTAAGAAAGCTGGAGCATTAGCACACCC
CGCCAGTTTTACGAAGATCTGGACAGATAAAGGATCAGGTGCTGACATGA
GTGTCAGTGTATGGAGAATGAACCCTCCTAGAGGATACAGGTGTCTTGGG
GCTGCAGCCATGCCAAACCACCATCACCATCCCGATGCATCCAAGTATTG
CTGTGTTGGACACCAATACGTCACTTCAGCTGGTGTCATCGACGAGTATA
ATGACAAAGGGTCTGACTCAGATTTGGACGGTGCATTTTGGAGGGTTGTC
CGTAAAGGTGGAGACTCTTCCGGGATCTACGGTGGAAACTTCTTGGTCAC
AACCAACTACCACTCAAGACCGACCGCAGCTGCTTACCTCTTAAAAGCCA
GCGACCTAGTGAAAGATGTATGGAGCCTACCCGCTGTCGCCGTAACACCA
CTGAACATTTATGAGCAAAACAAATTGGATTTGATTTGGAGTGACCGTGG
CTCAGATGCAGACCACGACTGTACCATATGGAGGGCAAATAAGCGTAATG
GATATTATCCAGTTGGTGATATGGTAGTCCGTACACATGGCAGACCCAGA
GTGGGCTACCTGGTACAAATGAGTGATCCCGACAGCGGTGATCTTaaaca
accaatcagctatcgTCAGATTTGGAGCGATAAAGGATCAGGGGCTGACA
TGAGTGTGAAAGTATGGCGTGCTAACTGCCCCAGTGGTTACGTTGCCCTT
GGTGATATAGCAACTGGAGGCCATTATCCTAAGGGAGGTGAAATGTACTG
TGTTCGTTCAAAATATGCAGCATACACAGCAGCTTCAAATTGGCAATGGG
TTTGGAATGATAAAGGAAGTGGATCCGATACAGATGTAACTTTCTTCGAA
GCAATAACCCGTGGCAACAGATTATTACAAAGCACGAGAGGCATGGGTTC
TAAAGTGGGTCACCATGGCACGCCACATTATGCACCTTTCATACTGAAGA
AGTCAGACACAACTTATTATGCCGAAAAACCAATTCGCGAAATCAAGTTG
AGGAATATGAGATACGACTTGTCGAAGAAGAAGATCTCAGGGAAGGCACC
ACAAGAAATTATCCCGACCGTAGTCAACAACATGAGTTCAAAGGAGCAAA
AAGGTGGCCGAACAATCGAAGTACAAACTTCGAAAACATCATCTTTCGAG
ATGAGTAGATCAATTTCTTTTGGGCTTAGTATGGAAGTATCTGGTGATGT
CCCAATCATCGGAGGTGGTGGTTTCTCAGTCACCACGAATTTTGAAACAA
GCAAGAGTTATACAACAGGAAAGTCGAAGACAGTGACCAAGACAGATTCG
GTAACTGCCGAGATTGTTCTTCCACCATATTCAAGGAGCACTGCTTACAT
CGTTGGCAACCAATACAAAGCGGATATCCCGTACATTGCCACGGTAACCA
AGGTCTATTTTGACGGTACCGAGTCTACTCAAGAAATGAGTGGAGTTTTC
AAGGGCGTTCAAATCGCAGAGTACGAAATTACTTATGGTGAGATTACAAA
AATCCCTGAGAACGAAAGAAAACCNTCGCAGAGTACGAAATTACTTTTGG
TGAGATTACAAAAATCCCTGAGAACGaaagaaaaccagtttttggcTAAC
GGAAgatcttcaattttaatttaacaaATTAGATTTAGTATTTTAATTAG
AGTGGACCGATTTGTATCTATTTTACAATTATTTAGTAGTAATTTGCGAA
GACCAATTCCAAAGTAGATAGTGAATAATTTCAGAAGGGAGAAaagaaca
ttatcaataaaTACCATCCTAAGACTACAGTTACACTTGCTCCCCTCCCC
TTCTAAAAGAAACTTGCATCCTTCAATCTCCATAAAGACTTACCAATATC
TTGCCTTCATTGTTAAACGAATCTATCTCTGGTTTTAGATCTAAAATCTG
AAAGCATCTAGCCGCTGACACTTTAGCTGCAACATAATCTGGTGCCATTG
ATCCAATCTCTCCTGCAATCATAGCTCCAAAAACTGTCGATAAAACTACC
CTGCGAAAAAGCAAGAAAATAACTTACCTAATT Run BLAST on NCBI transcript from alignment at scaffold_361:613700..616560- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062001 ID=TCONS_00062001|Name=TCONS_00062001|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at scaffold_361:613700..616560- (Clytia hemisphaerica)
TGCGATAGACCACGAGAAATGTGTTCAAACAATATTTCCTCAAATAATTA
TGGCACTTATTTTTGGTAACACCACGCTCTTTCACTGTGGCGCTTATAAA
AGGGAAGCGCTTGACAACAAAGAATGAGATCATCAGAGAATGAAAACAGT
CGTGACACTATTCATGGGAGCCATCCTGGCTGAACAAAGATAGCTTAATC
CTTCGTATAAACACTGCATAAATTATCTATTCCAGGAATGATGAACGCCG
TCACGTTATGTTTGATGCTTTTCATTGCATCAGGCGCAGGCGTAGACATT
GCATATCGACAAACAGACGATTACCAGTTAATATGGTCTGACAAAGAATC
AAAAGGCGACAAAGATGGTTCAATATGGAGAGTGAAAAATTTCCAGACTG
GCTTTTGCTCTTTGGGGGATGTTGCGAAAGGAAGTCATAGTCGTCCCAAC
GTCAAAGCTTTACTCGTCACTGCTAAGAAAGCTGGAGCATTAGCACACCC
CGCCAGTTTTACGAAGATCTGGACAGATAAAGGATCAGGTGCTGACATGA
GTGTCAGTGTATGGAGAATGAACCCTCCTAGAGGATACAGGTGTCTTGGG
GCTGCAGCCATGCCAAACCACCATCACCATCCCGATGCATCCAAGTATTG
CTGTGTTGGACACCAATACGTCACTTCAGCTGGTGTCATCGACGAGTATA
ATGACAAAGGGTCTGACTCAGATTTGGACGGTGCATTTTGGAGGGTTGTC
CGTAAAGGTGGAGACTCTTCCGGGATCTACGGTGGAAACTTCTTGGTCAC
AACCAACTACCACTCAAGACCGACCGCAGCTGCTTACCTCTTAAAAGCCA
GCGACCTAGTGAAAGATGTATGGAGCCTACCCGCTGTCGCCGTAACACCA
CTGAACATTTATGAGCAAAACAAATTGGATTTGATTTGGAGTGACCGTGG
CTCAGATGCAGACCACGACTGTACCATATGGAGGGCAAATAAGCGTAATG
GATATTATCCAGTTGGTGATATGGTAGTCCGTACACATGGCAGACCCAGA
GTGGGCTACCTGGTACAAATGAGTGATCCCGACAGCGGTGATCTTAAACA
ACCAATCAGCTATCGTCAGATTTGGAGCGATAAAGGATCAGGGGCTGACA
TGAGTGTGAAAGTATGGCGTGCTAACTGCCCCAGTGGTTACGTTGCCCTT
GGTGATATAGCAACTGGAGGCCATTATCCTAAGGGAGGTGAAATGTACTG
TGTTCGTTCAAAATATGCAGCATACACAGCAGCTTCAAATTGGCAATGGG
TTTGGAATGATAAAGGAAGTGGATCCGATACAGATGTAACTTTCTTCGAA
GCAATAACCCGTGGCAACAGATTATTACAAAGCACGAGAGGCATGGGTTC
TAAAGTGGGTCACCATGGCACGCCACATTATGCACCTTTCATACTGAAGA
AGTCAGACACAACTTATTATGCCGAAAAACCAATTCGCGAAATCAAGTTG
AGGAATATGAGGTAACGTTTATATGAATTTTTTTTTTTTCAAAAACTTTG
AGACAAAGTGTATTGTAACTTTGTGTGTTTCATTTAAAAAAAAATATTTC
ATTGGTCTACTTTTCCTTTAGATACGACTTGTCGAAGAAGAAGATCTCAG
GGAAGGCACCACAAGAAATTATCCCGACCGTAGTCAACAACATGAGTTCA
AAGGAGCAAAAAGGTGGCCGAACAATCGAAGTACAAACTTCGAAAACATC
ATCTTTCGAGATGAGTAGATCAATTTCTTTTGGGCTTAGTATGGAAGTAT
CTGGTGATGTCCCAATCATCGGAGGTGGTGGTTTCTCAGTCACCACGAAT
TTTGAAACAAGCAAGAGTTATACAACAGGTTAGTTTTCCATTTTTTCCAA
GATTTATATAATGTTCTGAAGAAAGAAAAGGACGCGACACATTTTTCTCA
AATTATCATCTTGCTCTTTCCCTATCCATTCTCCTGTGTTCTTTGAAGCT
ACACAGTCAGTGTTTTTCTCTAGCAAGGTCTCTTAACAAAAGATTTTTAA
TCTAAAAAAAGACTCCCTAGTTACTTTGTCTGTTTCAATCAAATAGGAAA
GTCGAAGACAGTGACCAAGACAGATTCGGTAACTGCCGAGATTGTTCTTC
CACCATATTCAAGGAGCACTGCTTACATCGTTGGCAACCAATACAAAGCG
GATATCCCGTACATTGCCACGGTAACCAAGGTCTATTTTGACGGTACCGA
GTCTACTCAAGAAATGAGTGGAGTTTTCAAGGGCGTTCAAATCGCAGAGT
ACGAAATTACTTATGGTGAGATTACAAAAATCCCTGAGAACGAAAGAAAA
CCNTCGCAGAGTACGAAATTACTTTTGGTGAGATTACAAAAATCCCTGAG
AACGAAAGAAAACCAGTTTTTGGCTAACGGAAGATCTTCAATTTTAATTT
AACAAATTAGATTTAGTATTTTAATTAGAGTGGACCGATTTGTATCTATT
TTACAATTATTTAGTAGTAATTTGCGAAGACCAATTCCAAAGTAGATAGT
GAATAATTTCAGAAGGGAGAAAAGAACATTATCAATAAATACCATCCTAA
GACTACAGTTACACTTGCTCCCCTCCCCTTCTAAAAGAAACTTGCATCCT
TCAATCTCCATAAAGACTTACCAATATCTTGCCTTCATTGTTAAACGAAT
CTATCTCTGGTTTTAGATCTAAAATCTGAAAGCATCTAGCCGCTGACACT
TTAGCTGCAACATAATCTGGTGCCATTGATCCAATCTCTCCTGCAATCAT
AGCTCCAAAAACTGTCGATAAAACTACCCTGCGAAAAAGCAAGAAAATAA
CTTACCTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062001-exon-scaffold_361-1575043694:615050..616560 | TCONS_00062001-exon-scaffold_361-1575043694:615050..616560 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1575043694:614683..614939 | TCONS_00062001-exon-scaffold_361-1575043694:614683..614939 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1575043694:613700..614464 | TCONS_00062001-exon-scaffold_361-1575043694:613700..614464 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1510915933:615050..616560 | TCONS_00062001-exon-scaffold_361-1510915933:615050..616560 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1510915933:614683..614939 | TCONS_00062001-exon-scaffold_361-1510915933:614683..614939 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1510915933:613700..614464 | TCONS_00062001-exon-scaffold_361-1510915933:613700..614464 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1491911889:615050..616560 | TCONS_00062001-exon-scaffold_361-1491911889:615050..616560 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1491911889:614683..614939 | TCONS_00062001-exon-scaffold_361-1491911889:614683..614939 | Clytia hemisphaerica | exon |
| TCONS_00062001-exon-scaffold_361-1491911889:613700..614464 | TCONS_00062001-exon-scaffold_361-1491911889:613700..614464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:613700..616560 - |
Blast
The following BLAST results are available for this feature:
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