TCONS_00062107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062107
Unique NameTCONS_00062107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062107 ID=TCONS_00062107|Name=TCONS_00062107|organism=Clytia hemisphaerica|type=transcript|length=403bp
tctctCGAAGCAGAGCGTATTGAAGATGTTAATGAAGGTCTTGAGCCTTT
CCTTTCATAAGAACTTGCTGTATTTAAAACTGCAGTTGTCGTTGAAGTTA
GCATGGTTTTATTCTTTATTGTTCGCTATTCTATTGTTCCTTTTGTTTTC
TATTATATTGTTCCTTTTGTTCTCTTTTGTTTCTCACCGTCCCTAAAAAT
TATATTCTATTTAAAATGTTCATGTTATCTCCAAAGAGACACAAAATATT
AGGTCCTAGGGGGTCGACTTTCTATTATATAAagtatttttctattttct
ttgaaataaaaagttcaaagataataattattaaatattgatggcaagaa
ttttcttcatcttcactTTTCTAGCATTTGGGTTCGAAAGACTTTCATAT
CCC
Run BLAST on NCBI

transcript from alignment at scaffold_361:641117..641519

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062107 ID=TCONS_00062107|Name=TCONS_00062107|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at scaffold_361:641117..641519 (Clytia hemisphaerica)
GGGATATGAAAGTCTTTCGAACCCAAATGCTAGAAAagtgaagatgaaga
aaattcttgccatcaatatttaataattattatctttgaactttttattt
caaagaaaatagaaaaatactTTATATAATAGAAAGTCGACCCCCTAGGA
CCTAATATTTTGTGTCTCTTTGGAGATAACATGAACATTTTAAATAGAAT
ATAATTTTTAGGGACGGTGAGAAACAAAAGAGAACAAAAGGAACAATATA
ATAGAAAACAAAAGGAACAATAGAATAGCGAACAATAAAGAATAAAACCA
TGCTAACTTCAACGACAACTGCAGTTTTAAATACAGCAAGTTCTTATGAA
AGGAAAGGCTCAAGACCTTCATTAACATCTTCAATACGCTCTGCTTCGag
aga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038930XLOC_038930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062107-exon-scaffold_361-1491911889:641117..641519TCONS_00062107-exon-scaffold_361-1491911889:641117..641519Clytia hemisphaericaexon
TCONS_00062107-exon-scaffold_361-1510915933:641117..641519TCONS_00062107-exon-scaffold_361-1510915933:641117..641519Clytia hemisphaericaexon
TCONS_00062107-exon-scaffold_361-1575043694:641117..641519TCONS_00062107-exon-scaffold_361-1575043694:641117..641519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:641117..641519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.235115	0.220111	0.154105	0.954421	0	0.243587	0.121624	0.505233	0.519212	0	0.411851	1.12569	0.3888	0.203426	1.94495	1.29365	1.0484	1.33441	0.785379	1.0514	0.501516	1.07046	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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