TCONS_00062008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062008
Unique NameTCONS_00062008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062008 ID=TCONS_00062008|Name=TCONS_00062008|organism=Clytia hemisphaerica|type=transcript|length=565bp
TGGAGGTGTTGCAGCTCCAATTGTGGTCGCGGCAGCTTTACCTGCTGCAG
GTTTTACAGCTTCTGGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAA
GGTGCAGTTTATGGTGGAGCAACATCTGGATTGTTTTCTGCTGCCACAAG
TGCTGGTGCTGCTGGTATGGGTGCTGCTACACAAGTAGTGATTGGAGGAG
CTGGTGCAGCAGCTACATGCAAAGTTTTAGGCACTGATTCTAAAGACAAA
ACATCTACCTAGATCTACGGTGTAGTGTTTCCAGGTGATTTATAAGATTA
TTATGAATTTTGTTGCTTTTGTTGACTGTGGTAGAAAGGGTGGCAGAGGT
ATGTAGTTTCTTGTGTTTCTGATCTTTTATTCATATAGCAATTAAGTAGC
AATCATACAAAAAGTATAATATACCAGATCTGTTGTAGAGATTAAGCTAT
CTCAGAATAGGGCTAACTCAGAATCACCCATTTCAATCATCACAGGTGAC
TCTTTGACATCAGATCCTGAGAAAGTAGCCAATTccttcaatgatttttt
cactACTATAGCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_361:724699..730751-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062008 ID=TCONS_00062008|Name=TCONS_00062008|organism=Clytia hemisphaerica|type=transcript|length=6053bp|location=Sequence derived from alignment at scaffold_361:724699..730751- (Clytia hemisphaerica)
TGGAGGTGTTGCAGCTCCAATTGTGGTCGCGGCAGCTTTACCTGCTGCAG
GTTTTACAGCTTCTGGTAGGTTTAAATTCCTTTTCGATAGTGTGATATTG
GTTTCAAAAACTAAAGAATTGTAACTTTTTTGTTGAAGCGGCAAAACAAT
TCTTTTTCAGATGGGAATTTGATAAATTATATCATTTTTTAGGGCTAGTC
CCTGTTGCGATAAAGGGAATGTGAATAGCAAATTCTAGTATCAACACAGC
AATTGTCTAGAAACATTAATAGTAGGGGGCAAACCCTTAGGACCTGTGGC
ATCTTTTATACAAAACTCAAACCTGGTCTATTTCAAAGACTGAAGTATTT
AAAGAATTTTTTGTGAAGGGGTTTTTTACTTTGGCCTAAGAAAACCTTTT
AGGACTAAAAAATTGAAATCATAGGCAAAACCCCTTTTCATAAAAAATTT
GACGAAATTTCAAAGTCAACAAAACCTGAAACCACTAATACCCAACCAAA
AGCTATCAATAAATGATATAGATGACTTTTAAGTAGATATAGTCAATTTC
CAAACGCCACTTGAGTAAATCGACTGAAAATGACATCAAAACGCAACTTT
GACTTTAATTTTCTCAAGATACCGTCAACTGCTCTAACTTGGGACTATCT
GACAAAACATGGGACGGCAATTCGGTCACCATTTTACCGAACCTCCAAAG
TCATTTAATTTGAGTTAATGAACGGCGTATTAAAACATACACAATTTCTC
TTTCGCACCGAGTAGGCTTTTAAAATCGAAATATGAAAAAAATTTGTAGT
GGATCACGATGGAGCGATTGACGTCACTCGCGCGACGAGTTACACACTCA
TCATTTGTTTATCCCATCGGGCAATAGGCGGTTAGGCGGCGGGCATTCTC
TAATTCTCCAATCAACGTCTGTTCATTTTGAATGGAAACAAAAAAGTTAA
AAAGGGAGCGCTATCAGTGAAAGTTATCGTGACATATTATGACAGAAGGT
ATGATTGATAAACTTGGTGGAGTTATCAAAACAAATTTGTCGTCAAAGAT
ATTAAACAGTAAGTGAAAATATAGGCCAGATTATCAACAGTCCCATGTTT
TGACCAATCGTCCCAAGTTAGAGCAGTTAACGGTAGGTTGGGAAATCGAC
TATATCCACTTAAAAGTCCTCTACATTGTTTATCTTATTTTAGTTTGTCT
TCTATATCATAAAAAATGTCACGGATGTTAAGGGTTTGCCCCCTACTACT
ACACAGTTTAAATTCAAACATTTAACAATGCTTACCCTGGTTTGATTAAA
GGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGGTGCAGTTTATGG
TGGAGCAACATCTGGATTGTTTTCTGGTGCTGCAAGTGCTGGTGCTGCTG
GCATGGGTGCTGCTACAAAAGCGGTGATTGGAGGAGCTGCTGCAGCAGCT
ACATACAAATTTGCTGGTTCTTCATGTGATGCCAAGCCCGAAAAATGTGA
CAAAGAATGAAAATTTCCTATTAATTTTTCTCTTTTTTTTTCGTACTTAG
CATAAAAGTTGTTCAATTTAAATTTATTTTCATGGTCACTCTTTATTTTT
TTTATACTAACAATATTTTGATCTGCTTGGTGCAGGTGTCTACACAAACA
TTTGAAGGCATTAGCATGACTTTGTTTATTGGATAAAAGTCAACATAGTG
TCTTCTCTCTGATGTATGAGAACATTGGTTTCCAAAACGTAGACGTCACA
TACTGACCATCATCTAATTTAAGATGATGTTCAATATGTGGCACTGTTTG
ACCGAATTGGATTTCCAATGTTTTTTTTGTAGTTTAATATTTTTCAACTT
ACCAAGAAATTTGATTTTGTTGATGGTCTCCTTTGCACTTTGTTACCTTG
GTGAAAGTATCTGCAACTTAATTGTCGTTGTTCAGGGACCAAAAAACTTG
ACAACAACTTTTAAAATGTTTTCCAAATTCTACTTGAATTACTTGAATTA
GATTTTTGTAAAACATAACATAAACATAGACATTTAGACATAGTGTTAAT
AAATTTGTTGTGTTTTCATTTTGAGACTCGCTCACTGACAGCATTAAGAA
TATCTATCGCCCCGAGAAATCCATGTTCAGTCTTTAAATCAGTAATCTAG
TTATTTTGTTGTTGTTTAAATTTAAATTTCTTAAAATTGTTACTGATATA
TTTTTGCATTTTCAGCTGGTCTGAGGTGTGTATTTGTATACTTTTTGTAA
ATTTTGTGATTATCTTGAAATATAATTATTGTTATTTTTGGTTTGTTTTT
CCAGACTTTAACTTTGGTGAGTCTTTATTATTATGATATTTTTTTTATCG
TCAACAAGCATAGTTTGTTGCTAGCATGTGAAAACCATGTTAATGTTGCT
GTTCCCGTGTCAGAGTAATTCCCTTGAGGGTGGTTTCTACGTGGTAGAAA
TAAGATCGCAGACTTAAAGAAAGGACAATAGTTATCATTCCTTATCATTT
CAAACTTCAATAATAGAAAGATGACTTTTTATCACTTTGCTTGATCTTTG
ACTATATATACTCAATATATTTCTTTTAGAGAAAATTCAGAATGAAAATA
TAAAAAGATGAAAAGAATATTCAAAACTGCACTCATTTGTTTTGCAATAC
CACTGACTGCTGTTACAGGTTTGTATTCTTAACGTGCTGAGTGTTTCAAA
AAAGAAATTATTTTAAGTACTACAAGTTTGAAATTGGATTCTAAATTTTT
CGACCTTAGAAAGAGCATAGACTAACTTAAATTCAGAGCTGTTATACAAT
GAATTCGGTTACACAAAAAGATTTACGAGAAAAATTCAATTCGTCAGGTT
AATTTTGTTTTGATTTGTTACTTGTCCATCATTTCTCTTTTCTTTTTCAG
TGTACAAACTTCAGCAAAACAAAAAGCAAGAAGTATGGTCCTTGCAGAAG
AAGGAAGAGTCCCGTCTCTTGTATAAAGCTGGTGGTGCTGTTATTGGTGG
TGGACTTGTTATTTTGGCTGGCCCAGCTGTTTTGTCTGCCTTAGGGTTCA
CTTCTGCAGGTTAAAGGTTTTGTTATTAAATAAGAGTTTAAATATCACAC
ATCATATCATATAGGTAGACACCTTCCTGATATAAAATATGTGTCTGGTA
TGAAACGGAAACATTTAACTGAGAAATAAAACTTTCTTTAATTTTTGTCA
GAAATAAATCAGCAGTTTGTGATTCATTGATTTGTCTTATTTTACAGGAA
TAGCAGCTAGTAGTCTTGCTGCTGGAATTCAAAGTGCATTTTATGGTGCT
GCGACAACTGGTGCTTTTTCTGTATTTCAAAGTGCTGGTGTGAGTGGGTT
AGGTATTTTTAGTAAGTGTGCTCTTGGATTGACAGGAGGTATAGCTGGCA
ATTACCTTGGGGAGATGATGAAAAAGAAGGAAAAGCCAAAGAAATGGAAT
GAGTTTGATTTATTTGGATTCCTTATTCGTGTAATAAGGTATATTGCATC
GTCAATTTATTGTTGATTGCTGTAGCCATGTTTTTTGTAATTGTGTTTTT
TTTACTTTACCATATTTTTGAGTTTTTATTTTGTAATTAGAATAATAAAT
TTATGCTTTTGATAGTTTCGTATAATTTAGTTTCCTAAATTTTTTTATTT
TTCTCAAACATTATAATCCTGATTTTTGCATTGTACAATTTTCATAATAA
TTATTCTTTTAGGTAAGAAATAAAACGTACATGGAATGATGGGCTTTGGA
ACACAACCAAAGATAATTACGATTATGATCAACATAAAAAATACGAGTAA
TCTGATTAGCTAAGACCGCCTTCAAAAATGGGTTCTGGTAAGCTAGAGAT
CATATTTTTTACAATTTTACGATAATTTTTAATGACGTGGTGGTATACCC
TAAAAACTTAAAAATCCTTTTAGTTTCGTATCTTGCTAAAATACCAAAAA
GGTGGTATCCAGACTAAAATTTGAGAATATTTTTACTAATTTGGTACTAA
AAAATTGGCAATTTTCATAATTTTTTGAATTTTTTTTCAGAATTTTTCCT
CAGAACTTTTCGTGCATTATTCAGAATTTTTACAATCCTCCCCCTGTCTA
GAGGTAAAGGTAGAGAAAAATTTCGACGAATTTATCCCATAATGTACTCG
GTACCGTGCAATAAATATTACAATTATTATGTGTAACATAATTTTGACTA
TTATCTGAAAGATATAGCTTATACAACATACAATGATGCAAAAAGATGGC
TTGGATACCGCTAGCCATTTTTGTTTCATGTTAGAACTCAGCTCTCAGAA
TGGATCAAGTCATTTCAATTCATTATCACTCAAGTTGTTTCTTATTTGAT
TATAGTGTCTTTCGAATGAAAATCGAACCAAAACAAACAATTTATTCAAT
CGACCTCAGCAATAGCAAGAGAATATTTTAGAAATGAAAAATATTTTCTG
TGTTTATCAACATCTCATCTTCTGCATGAACTTTAATTTGGTTACTATAG
CAATAGTTTTAAAATGGTACATCATAAATGGCCGTTACTTATAGTTAAGT
TATAGATAAATAATGTGTTAGTAATTGTTGTAGGTTTTCGAGTTATAACA
GGTAAAAGTATGGAAAAGCTAATAAGAGATAGTGAACAACTCAAAAAAGT
GCAAATTTTGGGCTTAATTCGTGCACAACAAAGAATGATGATTTGAATAT
AAATTATAGAATAGTATAAAATAGGTTAAGTTCAAAAAAGATAACCAGCT
ATTTTCAAAAGCTTTGAGTGAAGTTAAAATCGACAAATGAGGGAATTGAT
GACGAGATAGTGAAATTCTCCCTCTAATCAGCTGAAATGAGCTTTAAAAT
CTCTTGAATATAAATATCTTAGGATACTTTTCGCTGTCATTCTTTTAGAA
AAATGCAAATGATCAATTCCATTAAATTTGTTTTATTTCTTTATTTTGCA
GGGGTAAAAGTTAAAAGTATATAGAAATATTAAAAGACTGGTATTGCTCA
TCACAGGGCTAAATAGGTACGTTCTTATTGTTTCAAACAATTAATCTCTT
CTTCTGTTGACACTTTTTATTTTTTTAGAATATAGAGGTATTAACATTGT
CGCCGAAAGTGTTTCTATAACATTTGTAATACATTTTTAAACTAAAGAAA
TATAAACCAGCTTTTTATTCTTTTATAGTGATGGCTGAAAAAGTGGATGA
GACTAGTTGGTCGGATTATTTTACTGCTAGGAATGTTGCTAAGGCAACTG
CTGGAGGTGTTGCAGCTGTAGGATTGGCCACGGTAGCTTTACCGGCTGCA
GGTTTTACAGCTTCTGGTAGGTGTACTTGAATATTCAAGATGATACTATT
TTTGACTAGAAAATGCCTGATGTCTTAGATCCCTAACGAAAAACTCAATG
ATATAAAAGTAAGATAAATTCAAGTGATTCTAAGAGAATTGTCTGTTTTA
TTAACAAGCTCAGTTTTNTAAATTCAAGTGATTCTAAGAGAAACTTCTAT
TTTATTAACAAGCTCAGTTTTTCAAAAATAATTTGATTTACTTTTGATTA
TAGGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGGTGCAGTTTAT
GGTGGAGCAACATCTGGATTGTTTTCTGCTGCCACAAGTGCTGGTGCTGC
TGGTATGGGTGCTGCTACACAAGTAGTGATTGGAGGAGCTGGTGCAGCAG
CTACATGCAAAGTTTTAGGCACTGATTCTAAAGACAAAACATCTACCTAG
ATCTACGGTGTAGTGTTTCCAGGTGATTTATAAGATTATTATGAATTTTG
TTGCTTTTGTTGACTGTGGTAGAAAGGGTGGCAGAGGTATGTAGTTTCTT
GTGTTTCTGATCTTTTATTCATATAGCAATTAAGTAGCAATCATACAAAA
AGTATAATATACCAGATCTGTTGTAGAGATTAAGCTATCTCAGAATAGGG
CTAACTCAGAATCACCCATTTCAATCATCACAGGTGACTCTTTGACATCA
GATCCTGAGAAAGTAGCCAATTCCTTCAATGATTTTTTCACTACTATAGC
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038868XLOC_038868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062008-exon-scaffold_361-1575043694:730687..730751TCONS_00062008-exon-scaffold_361-1575043694:730687..730751Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1575043694:729393..729450TCONS_00062008-exon-scaffold_361-1575043694:729393..729450Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1575043694:724699..725140TCONS_00062008-exon-scaffold_361-1575043694:724699..725140Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1510915933:730687..730751TCONS_00062008-exon-scaffold_361-1510915933:730687..730751Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1510915933:729393..729450TCONS_00062008-exon-scaffold_361-1510915933:729393..729450Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1510915933:724699..725140TCONS_00062008-exon-scaffold_361-1510915933:724699..725140Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1491911889:730687..730751TCONS_00062008-exon-scaffold_361-1491911889:730687..730751Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1491911889:729393..729450TCONS_00062008-exon-scaffold_361-1491911889:729393..729450Clytia hemisphaericaexon
TCONS_00062008-exon-scaffold_361-1491911889:724699..725140TCONS_00062008-exon-scaffold_361-1491911889:724699..725140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:724699..730751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.724609	11.3558	6.98645	0.00731802	0	0	0	0	0.00242529	14.5168	0.0197729	2.32572	11.6007	1.5475	13.2866	6.232	0.00446588	6.01067	1.5993	0.179447	7.9931	3.86799	0.153212	0.0811407	0	0	6.58109	7.07902	0.00460988	10.5961
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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