TCONS_00062012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062012
Unique NameTCONS_00062012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062012 ID=TCONS_00062012|Name=TCONS_00062012|organism=Clytia hemisphaerica|type=transcript|length=876bp
aGAAATCTGGTGGCCGTATCTGTTCATTTTCACCGTGTATCGAGCAAGTT
CAACGCTCATGTGTTGTACTTAGAAGATTGGGCTTTTGTGAAGTGAAAAC
AGTCGAGTGTTTGGTTCGAGCAATGAACGTTCGTACGACTCCAATGCCAG
AAGCCAACACTGGAGCTGGTTTCAAATGGGAAAAAGTGGAGAAGACGACC
AGCGTAACTAGCGAAGATGAACCACAATCTAAAATGAGAAAAGTCTCAGA
TGCAGAAAGTGGGTCAGACAGAATCACCACAAGCGACACAGCAAAAGAGA
ATTCGAAAAGTGAAAACGATCAACAAATGGATGAGACGAATCATAAAAAT
GAAACCGAAAGTAAATCAAATGAAAACGTGAACGCTAATACGAATTCTAA
CCAAGAATCGTCTGAAAATTCTAAGAATTCTCCGGTAAATCAACAATCCT
CAAAAGTACAAAGCGAAAATGTTGCAGGACTTTTACCAAATGGTATGGTA
GCTAAGCTAACTGCAGGAACAAAGCCTGGTAATATCAATGTTCTGACGAG
TAAACCTGGAAAACAAATGCCTGGTCATACAGGTTATCTGACTTTTGCAT
CTTGGTATCCTTCATGTAGTAGTGAAGTTAAGAGAGAAGAATagttttta
tatattataaaatCCATTTAAAATGAATACTCGCGATTGTGTTGTTTCGA
TATTCTTAGATCTTCTCATTCGATATTATTATATTTCCTTTTTATAGTTT
CTTAACGGAAGGTACGCATCTATCTCTTTGTTTTCTTTAACCCGACATAG
TAactttttaaaactgtttttgagATGTAATCACATACTAACAGATTGGC
TTGTCCGATTTGACTAAAACTTGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_361:745539..751313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062012 ID=TCONS_00062012|Name=TCONS_00062012|organism=Clytia hemisphaerica|type=transcript|length=5775bp|location=Sequence derived from alignment at scaffold_361:745539..751313- (Clytia hemisphaerica)
AGAAATCTGGTGGCCGTATCTGTTCATTTTCACCGTGTATCGAGCAAGTT
CAACGCTCATGTGTTGTACTTAGAAGATTGGGCTTTTGTGGTAAATAAAT
TTCTTTTTTATGTTTATTTTGTCATACCCAGGCCGGAGGCCGGGATTCCA
AATGGTCTTAAAAAACCTGGAAAATCCTCTTTTAAAAGGTTTCTTCAGGA
TCTTTTTCATTGTTTTCTTCGTCCAAAATAAACACAATCACATAATCAGC
ACACCTTAAAATTGTATTAAAAATTAATAGCATCACAAGATGAAGTCATA
TCAGTTCTAATTCGAGAAAAAAGACCAATTTTCAAAGAAAGATTCCTGGA
ACATTACACCTTTTACAGCTCTTTTTAATGAAGAAAGGGTCTAAAAGATT
TAATCAAAAGTCAAGGGAAATTATACTCTAGCGAATCCTATATATATATC
GACTGTCCTTGATAACTCCAGATGAATTCCTATCATCGTCATTACATTTT
ATATGCCTTATTAGTTATCAAAACCAAGTTCAATTTAGCTTTTATTCTTC
TGTAGAAGTGAAAACAGTCGAGTGTTTGGTTCGAGCAATGAACGTTCGTA
CGACTCCAATGCCAGAAGCCAACACTGGAGCTGGTTTCAAATGGGTAAGA
GACTTTAGTCCGCCTACATATTGTTGTGTTAATTTTCAGTTGATTTATCA
CCGAGTTTAGTAGTAAATTCATTCTGAAGTCCAGAAGAGGATATCGCATG
ACCTTGAAGGTTGTGGGGTAGGGTGATCATATTTTTGGTACATATCCCTA
AAAATTGAGTGAACCTCTAAATTAAAAACGCTAATTTCTTTATAATTATA
TCTATTTATTATCGATGGGCAATTTCATTTTATGTCCATACAGGGGGGTG
GACGAACATTTCCAGGGTGTGACTTGAGCAGAATTTCCAAGGGGTCTAAA
ATTATTTCAAAATTTCCAAGGGGTAAAAAAAATTATTTTAGTTCGTCCAC
CGTCACTTTAAGGTATGAAAATAAATTTTCCAAGGGATTTTTTGCAAATT
TTTCCAATTTTCAGGGAGTATCCACGCATTTCCAAAAAATCGTTTTTGAT
TTGAAAAGGTTCATCCACTCTCCCCCCCTGTATGGAAATTTAATGGAATG
GCCCAATTTTTTATTAAAAATGAAGAAGTAACTCACAATTGCCTCACTTT
ATTTTATTGCTTATACTCTTTTCATGCATGAAACATCGTGTGGCAATCGT
AAGCTGCTTCTTTATTTAACCATATTTTGCTGGGCATTTTCTCTAATCTT
TGAGCACTTTATGATTCTTTATATTTCATTGTATATCACATTTTTCTCTA
TATAGGAAAAAGTGGAGAAGACGACCAGCGTAACTAGCGAAGATGAACCA
CAATCTAAAATGAGAAAAGTAAGTTGAATTGATATCTCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTATT
TTTCCATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCA
TCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTAAATA
TTGTTCGTCAAATTTATCTTTTGGAAATGTTATTTATTTTAGTATTTCTG
GATCTACCAAAGCCCTGGGATGCCATACCACACGCGAAAAAAGCATTAAA
GGTATTCCTCAAACATAATATTGACAAGTTTATTGTTAATTTATTAAAAA
TCTTTTGAGGAGATTCAATATCCACATCCTCAAAGGATGTCTTTGCCAAG
ATGATGGGATTCATTATCCATTCAATAAAGAAAATATTTCTTGGGGGGGG
ATGCCTACGACACTATAAAATTGCCCTTTGATTGATAACCTATTTTTCGC
ATAGTGTCCTCCAGGGTTTGTTCCCCCCACCAAATTTTTGATTTTTTTAA
ATCTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAAAGAATAAGGGGACAAAAGTGTCCCCCCGCCGAAGAGTGCAAAAAGT
GGTAATAGTGCAATTAACGATTAATTGCGCTCCTCTAAACCAATCAGATT
CGAGTAATTTTGCACGGCTGACGATTACCTTTTTAATTATTAGAAATCTG
GTGGCCGTATCTGTTCATTTTCACCGTGTATCGAGCAAGTTCAACGCTCA
TGTATTGTACTTAGAAGATTGGGCTTTTGTGGTAAATAAATTCTTTTTTA
TGTTTATTTTGTCATATCCAGGCCGGAGGCTGGGATTCCAAATGGTCTTA
AAAAATCCTCTTTTAAAAATTTTCTTCAAAATTTTTTAAGTTCATTGTCT
TCCTCGGCGTCCGAAATAAATAAAATCAGCACACCTGAAAATTGTATTAA
AATCAATAGCATCAAAAGATGAAGTCTTATCAGTTCTAATTCGAGGAAAA
AGATGAATTTTCAATGAAAGTTTCCTGGAACATTACACCTTTTACAGCTT
CTTTTTAATGAAGAAAGGGTCTAAAAGATTTAATCAAAAGTCAAGGGAAA
TTATACTCTAGCGAACTCTATATATATATATATCGACTGTCCTTGATTAC
GCCAGACAAATTCCTATATTGTCATTACATTTTATATGCCTCATTAGTTC
AATTTAGCTTTTGTTCTTTTGTAGAAGTGAAAACAGTCGAGTGTTTGGTT
CGAGCAATGAACGTTCGTACGACTCCAATGCCAGAAGCCAACACTGGAGC
TGGTTTCAAATGGGTAAGAGTTTGAAAATGTATCCACTTTAGTCCGCCCA
CATATTGTTATGTTATTTTTCAGTTGATAATCACCGAGTTTAGTAGTAAA
TTCATTCTGATGAAGTCCAGAAGAGGATATCGCATGACCTTGGAGGTTGT
GGGGTAGGGTGATCATATTTTTGGTACATATCCCTGAAAATTGAGTATAC
CTCTAAATTAAAAACGTTAATTTCTTTATAATTATATCTATCTATTATCA
ATGGGCCATTCCATTTTATGTCCATACATGGGGGGTGGACGAACATTTCC
AGGGGGTGACTTGAGCAGAATTTCCAGGGGGTCTAAAATTATTTCAAAAT
TTCCAAGGGGTAAAAAAAAAGACTGATTTTAGTTCGTCCACCGTCACTTT
AAGGTATGAAAATAAATTTTCCAAGGGATTTTTTGAAAATTTTCTAATTT
CCAGGGAATATTTCCAAGAAATATTTTTTGATTTGAAAAGGCTCATCCAC
TCCCCCCCCCTGTATGGAAATTTAATGGAATGGCCCAATTTTTTATCAAA
AAATAAAGAAATAACTCACAATTACTTCACTTTATTTTATTGCTTATACT
CTTTTCATGCATGAAACATCGTGTTGCAATCGTAAGCTGCTTCTTTATTT
CACCATATTTCGCTGGGCATTTTCTCTAATCTTTGAGCACTTAATGATTC
TTTATATTTCATTGTATATCACATTTTTCTCTATATAGGAAAAAGTGGAG
AAGACGACCAGCATAACTAGCGAAGATGAACCACTATCTAAAATGAGAAA
AGTAAGTTGAATTGATATCTCTACTCAAATTTATTTTGATGGATAAAAAA
GTTTAGTGATAACTTCTTTGTAAAACGAGAAAGGACAAGGTTTGTTGGGT
ATAATGCCCATTCTTTACACAAACAAAGTTCTGTGGTGTCGGTCAACACG
ATAAGAATCCCTCCTGTTAAATTATGATTGAACTTGTTTAGGTCTCAGAT
GCAGAAAGTGGGTCAGACAGAATCACCACAAGCGACACAGCAAAAGAGAA
TTCGAAAAGTGAAAACGATCAACAAATGGATGAGACGAATCATAAAAATG
AAACCGAAAGTAAATCAAATGAAAACGTGAACGCTAATACGAATTCTAAC
CAAGAATCGTCTGAAAATTCTAAGAATTCTCCGGTAAATCAACAATCCTC
AAAAGTACAAAGCGAAAATGTTGCAGGACTTTTACCAAATGGTATGGTAG
CTAAGCTAACTGCAGGAACAAAGCCTGGTAATATCAATGTTCTGACGAGT
AAACCTGGAAAACAAATGCCTGGTCATACAGGTTATCTGACTTTTGCATC
TTGGTATCCTTCATGTAGTAGTGAAGTTAAGAGAGAAGAATAGTTTTTAT
ATATTATAAAATCCATTTAAAATGAATACTCGCGATTGTGTTGTTTCGAT
ATTCTTAGATCTTCTCATTCGATATTATTATATTTCCTTTTTATAGTTTC
TTAACGGAAGGTACGCATCTATCTCTTTGTTTTCTTTAACCCGACATAGT
AACTTTTTAAAACTGTTTTTGAGATGTAATCACATACTAACAGATTGGCT
TGTCCGATTTGACTAAAACTTGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038871XLOC_038871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062012-exon-scaffold_361-1575043694:751224..751313TCONS_00062012-exon-scaffold_361-1575043694:751224..751313Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1575043694:750670..750758TCONS_00062012-exon-scaffold_361-1575043694:750670..750758Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1575043694:749896..749958TCONS_00062012-exon-scaffold_361-1575043694:749896..749958Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1575043694:745539..746172TCONS_00062012-exon-scaffold_361-1575043694:745539..746172Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1510915933:751224..751313TCONS_00062012-exon-scaffold_361-1510915933:751224..751313Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1510915933:750670..750758TCONS_00062012-exon-scaffold_361-1510915933:750670..750758Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1510915933:749896..749958TCONS_00062012-exon-scaffold_361-1510915933:749896..749958Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1510915933:745539..746172TCONS_00062012-exon-scaffold_361-1510915933:745539..746172Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1491911889:751224..751313TCONS_00062012-exon-scaffold_361-1491911889:751224..751313Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1491911889:750670..750758TCONS_00062012-exon-scaffold_361-1491911889:750670..750758Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1491911889:749896..749958TCONS_00062012-exon-scaffold_361-1491911889:749896..749958Clytia hemisphaericaexon
TCONS_00062012-exon-scaffold_361-1491911889:745539..746172TCONS_00062012-exon-scaffold_361-1491911889:745539..746172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:745539..751313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.79513	3.89986	1.73408	1.02074	5.93739	3.92896	7.8976	8.73801	6.36241	7.39885	4.98022	4.56731	6.49992	6.3999	3.00484	4.10461	5.42474	4.6377	0.723168	2.2901	1.56095	2.60721	4.74423	3.60913	7.49028	7.38259	0.983273	0.176652	2.95777	2.33671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top