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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061905 ID=TCONS_00061905|Name=TCONS_00061905|organism=Clytia hemisphaerica|type=transcript|length=1681bp
CGAAAAGGCAGAGAGACccatttttattttctgtttgTCTTTCACAAGTC
AATAGTAAAAGGACAAGAAAacgaaaagtaaagaaaaaaccATATTTCAT
TACCCCTGAAAGAAAAGGGGCAAAAAGGAGCTCGATGAGAATGGCGAATA
AATACGGAAGAAATGcgaaactaattttatttttacttgcCGAATCAACG
AAAAGACAATCACACATTAGCCGCTTGTTAGACATAATGCATGGCTTGAC
CACAATCTATAACGTTCGTttggtaaatgaaaaaaatttgtatgCTACTT
ACATACAAGAATCTTGTGAAAAATTAGTCATTGTTTTGTTCAATGAGGAT
GGTCTGGGAAATAGACAGTTTCGTGAATGTTTACGAACATCCCTAGCAGC
AAAATTGGACATTATTGGTGTTCTTGACGAAGGTGTATCACGAGAAAGAG
TCCTCAGCTTTTTCTCTTTCAACAATAAGCGAAAACAAATGCTGGAAGAA
ATTGTCACAAGTGCATTCTGTTTCCAGAAAGACTGTCTGTTCAAAGCAAC
ACCATTAGTTGATCGCATACAGCAATTATGCAGACCGGTATCTTCCCGGA
TAAGCGATCGCCCGCGTTTACCAAAGATAACCGAACCCAACGTCAATCTG
GAAGCTTGtttaaaatcaaagaaagtGATTTTGAAACCCATGTCTCGAGC
ACCTCCACGAACTTTATTTTCATGCACCTTCACCAGAAAAACTGAACTCC
CACTCCTGAAGCCTCAAAAATCATCCGCAGGGCAAATCAGAAGTCTTCCA
AGACCGAGGAATATCCAAAACACAAATGTCATTTATCCAAAGATTGAAAT
CTCACAAGGATTCCCCACTCAAGTTATAAAGAAACGTACAAGCTCAACAT
CATCAGCTCGTAGTAAAATACCAATCAAGCAATTGACATGTCCGATAATT
GAAATCAGCCAAGATGACGATTCGGACGATATTCCGGACACTCCAGATGC
GATCACTGAAAAGCAAGACCGGTTGCCATGGACAATTACCACGACAACAA
CGCTAGATGATCCAGGAGCAAACAGAGATGAGTTTAATCTTGAAATTGAA
GGCGATTGTGAGCGAAGACTTTCGTTTGACTACGTCTCGAAAACGTATAT
CGTGTTTGAtccaaagaagaagaaaacccTACACGTCAATTTCCCTAATG
GTTGCAGCATTTTGAGGCGTGAAAGTTTACATGATATCCTGTCCAACGTT
TCGTCACGCAGAAATTCATTCTTGTGGAGCAACAGTGCAAGTTCTTCAAC
AGATGAAATCAATCTTGAATCTAAGTTCGATTCGGTCAATATCTTGGACT
CACCAATTCCCTCGCCAACAATGAGAAGAAGCAATGTGATTTATCAAAAT
CCACTTCCTGTTTACCCAGATGAAATTTGTTTTCCACCGGTGGAAAAATT
CCCATGTGACACTTTACAGATGAGAAGGCCGTCAGTGTTTGACGTCTTAT
TGCattaaattaaaaacattttttggtcaattttgaaaattttcttaaat
ttcatgaattttctttatagtaagtagtaagtaacCATTTCTAGAAaagt
tttatcaatttttttgtctgaaaaccaaaactttttgattgtatttaaga
atttttttttaccaataaTAAATTGTTGAAG Run BLAST on NCBI transcript from alignment at scaffold_361:781948..784196+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061905 ID=TCONS_00061905|Name=TCONS_00061905|organism=Clytia hemisphaerica|type=transcript|length=2249bp|location=Sequence derived from alignment at scaffold_361:781948..784196+ (Clytia hemisphaerica)
CGAAAAGGCAGAGAGACccatttttattttctgtttgTCTTTCACAAGTC
AATAGTAAAAGGACAAGAAAacgaaaagtaaagaaaaaaccATATTTCAT
TACCCCTGAAAGAAAAGGGGCAAAAAGGTAAGAATTTGTTTAACTTTACA
TATTCTGCTTTTATTATTTGTAAGGAAGGCATTCTTATTTGCTATCTTGG
TATTCTCTAGCACACCCCTCTCTCATAGCCCATCTGGAATTCTTTTCCTC
AGTTGGGATAAACATTCCTATTGAATTcccgatggggatagaaattctat
agtTCGATAGTTCCAAGGCTAGAACATCCAGTGAGGATGgtttacaattt
ttaaacattgaattttgaatggggatgaaatcaaagtcattttcccagca
gggctgaaattctagggtatttttccaccggggacgaattttttgccaaa
ttttccagtgggtctgtgacacaggggtgttctaGCGAGAAAACAAACCA
TGTTTCTTTCTGTCAGCGATGTAAGTAGTGAAGCTGTCGGCAATGTCACT
TATTTGAAGAAAGAGCAGAGAAGGAGCAGAAAAAACATTAAGACGGTTCG
TAAACACTGCAGACCAAAAATAGGGCCGTTTTTAGTCCGAGTCTTGTACA
AAAGATTTCtcctaaaattttaaacattttcttttcgATTAATAGGAGCT
CGATGAGAATGGCGAATAAATACGGAAGAAATGcgaaactaattttattt
ttacttgcCGAATCAACGAAAAGACAATCACACATTAGCCGCTTGTTAGA
CATAATGCATGGCTTGACCACAATCTATAACGTTCGTttggtaaatgaaa
aaaatttgtatgCTACTTACATACAAGAATCTTGTGAAAAATTAGTCATT
GTTTTGTTCAATGAGGATGGTCTGGGAAATAGACAGTTTCGTGAATGTTT
ACGAACATCCCTAGCAGCAAAATTGGACATTATTGGTGTTCTTGACGAAG
GTGTATCACGAGAAAGAGTCCTCAGCTTTTTCTCTTTCAACAATAAGCGA
AAACAAATGCTGGAAGAAATTGTCACAAGTGCATTCTGTTTCCAGAAAGA
CTGTCTGTTCAAAGCAACACCATTAGTTGATCGCATACAGCAATTATGCA
GACCGGTATCTTCCCGGATAAGCGATCGCCCGCGTTTACCAAAGATAACC
GAACCCAACGTCAATCTGGAAGCTTGtttaaaatcaaagaaagtGATTTT
GAAACCCATGTCTCGAGCACCTCCACGAACTTTATTTTCATGCACCTTCA
CCAGAAAAACTGAACTCCCACTCCTGAAGCCTCAAAAATCATCCGCAGGG
CAAATCAGAAGTCTTCCAAGACCGAGGAATATCCAAAACACAAATGTCAT
TTATCCAAAGATTGAAATCTCACAAGGATTCCCCACTCAAGTTATAAAGA
AACGTACAAGCTCAACATCATCAGCTCGTAGTAAAATACCAATCAAGCAA
TTGACATGTCCGATAATTGAAATCAGCCAAGATGACGATTCGGACGATAT
TCCGGACACTCCAGATGCGATCACTGAAAAGCAAGACCGGTTGCCATGGA
CAATTACCACGACAACAACGCTAGATGATCCAGGAGCAAACAGAGATGAG
TTTAATCTTGAAATTGAAGGCGATTGTGAGCGAAGACTTTCGTTTGACTA
CGTCTCGAAAACGTATATCGTGTTTGAtccaaagaagaagaaaacccTAC
ACGTCAATTTCCCTAATGGTTGCAGCATTTTGAGGCGTGAAAGTTTACAT
GATATCCTGTCCAACGTTTCGTCACGCAGAAATTCATTCTTGTGGAGCAA
CAGTGCAAGTTCTTCAACAGATGAAATCAATCTTGAATCTAAGTTCGATT
CGGTCAATATCTTGGACTCACCAATTCCCTCGCCAACAATGAGAAGAAGC
AATGTGATTTATCAAAATCCACTTCCTGTTTACCCAGATGAAATTTGTTT
TCCACCGGTGGAAAAATTCCCATGTGACACTTTACAGATGAGAAGGCCGT
CAGTGTTTGACGTCTTATTGCattaaattaaaaacattttttggtcaatt
ttgaaaattttcttaaatttcatgaattttctttatagtaagtagtaagt
aacCATTTCTAGAAaagttttatcaatttttttgtctgaaaaccaaaact
ttttgattgtatttaagaatttttttttaccaataaTAAATTGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061905-exon-scaffold_361-1491911889:781948..782074 | TCONS_00061905-exon-scaffold_361-1491911889:781948..782074 | Clytia hemisphaerica | exon |
| TCONS_00061905-exon-scaffold_361-1510915933:781948..782074 | TCONS_00061905-exon-scaffold_361-1510915933:781948..782074 | Clytia hemisphaerica | exon |
| TCONS_00061905-exon-scaffold_361-1575043694:781948..782074 | TCONS_00061905-exon-scaffold_361-1575043694:781948..782074 | Clytia hemisphaerica | exon |
| TCONS_00061905-exon-scaffold_361-1491911889:782643..784196 | TCONS_00061905-exon-scaffold_361-1491911889:782643..784196 | Clytia hemisphaerica | exon |
| TCONS_00061905-exon-scaffold_361-1510915933:782643..784196 | TCONS_00061905-exon-scaffold_361-1510915933:782643..784196 | Clytia hemisphaerica | exon |
| TCONS_00061905-exon-scaffold_361-1575043694:782643..784196 | TCONS_00061905-exon-scaffold_361-1575043694:782643..784196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:781948..784196 + |
Blast
The following BLAST results are available for this feature:
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