TCONS_00061909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061909
Unique NameTCONS_00061909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061909 ID=TCONS_00061909|Name=TCONS_00061909|organism=Clytia hemisphaerica|type=transcript|length=3651bp
atccccagaatttattttgttataggggatgcgtatcgtgtatgaaattc
tcgtccgagagttacctcaaatttggggtaaccaaaatttgcataaattc
gCATAATGTCGtcacatccaatcaaagaaagaaaaaaatgaagtcatcgt
gctgttgttttcataattatcaattttcattcattgaacaaagaaaaaaa
gaagtcattgtattgctatgacgcataatcaaaaaagaaaaaagaaaaga
cgggggtaagttgggacagaaatattttagacgatacgcatcccctatat
caaatcatattagaggggatgcgtgcagcctagagACAAGAGTATTCGTT
ATATTAatgttatattttctttctAGATGATTTTGTTGATGAACATTTAC
ATGGATCAGCCCTTGGTCCTGATTGGAGCAGTAAACAAAAACTGAAAGGC
TTGTTAGAAGAAACAAGTGATAATCATACTAAACGACGAATAACTATCGA
ACACGAGTGTCAGATTACTGAAGTTTGGTGTGGTTCGAAAGATGAGAAAG
AACCTGAAAATGTATACGCTAGACTATCAAATCGGAAAGTTATCGGTGGT
GATTTTATTGTCAGTGCAACTGGAGTTCAACCATATGTACCTTTTGAGAT
AGATTCTCTGAGGCGATCCTCAGATGGAGGAATCCTAGTCGATGAGAACA
TGCAGACGAACCTGACAGATGTTTATGCTTGTGGTGATTGCTGTACTTCG
AACTGGCAACATAGTGAAACCTGGTTTCCAATGAAACTCTGGACACAAGC
CTGGCAAATGGGTTCTTATACTGGGAAATGTATAGTGAACGATATCGTTG
GTGAGGAATCGTCATTAGATATGTGTTTTGAATTATTCTCTCACGTGACT
ACGTTTTTCGGTTATAAAGTGTGTTTATTAGGTTGTTTTAATGGACAGAA
AATGGCGAACTCAGAGTATGAGGTCTTACTACGAGTGACGAATGATGTGG
AATATGTAAAGGTCGTTCTTAAGAATGGTCGAATGAAAGGATGTGTTCTC
ATCGGTGAAACTGACCTGGAAGAGACTTTTGAGAATTTGATACTGAATGA
ATTGGATGTTGGCTTCCTTGGTGAATCGTTGCTCCATCCTGGAGTAGATA
TTGAGGattattttgattgaaaaaataaatcgatttgCTATCTTTTTAGG
CTTCTTTTAGTATAGATGATCTTCTTTGGTAAGTATAGCACTTAGCAATT
TTGttaccgcagtcggaggcgacccgaaggcttctctttcgatagctacc
tacctgaaggtaggggagggcgccactctttctccctggattgctccact
tacccttgatccttcacTTAATTGCTGAACATTAAGCAGATAGACATCGA
gtgccattttgagaatctttggtgtgacccggctgggggttgatcccaca
accttgcgaaccgcagctggatgctctaccactgcactacggtcgcttca
GTGAATCATACAACAAGTTTTTCCCCATGTTCTGTTTCAGAGtataaaaa
ataagaatacaaaaataacaaagatgACCATCACTCAAAACAGGGATGGC
TCGAAATTGTGAAAAGCATTTTGTCAAATTAAATCGAGTCTTTCTTGAAG
AACAATGGAAAAGAGACGAGGAGCTGAAAAGACCACCTTTATATAAACTC
CAGACTGCTGAAGAAGTTCGGAAATGGATTCCGAGTATCTCCAAAGAGAT
TGATTATTGTTTGCGCCAGTTGAGCGGTGCTAGAGGACACGAATACCAAG
AGAGcaagaaaaaagatttcgaaCAGCGTGTtcaagatttggaaaaagaa
cGTAAAAGATTCATTCAGAAAGTCTATCAACTTGATCCAACACAGAAAGA
TAAAGGTGTGCCATGGCAACCGAAGTCATACGTCAGTAAACGGAAACTTG
AGAGCGTTAAGGATGGTGCTTATAGTTCGCCTACAACGAAAGTAGAAGAA
TCCAAAGAATCACCCAATGAAACAGTTCCAGcaaagaaaacgaaaagaaa
aCCAATTGTGTTGAATATTCTGAACAAAGAGAAGGAGGAGAATGGTGACG
AAGATTGATGAAACCTTAAAAAGTTTGTTCTCTCGAAATGAATATTAATG
ATGAGCTAAGGCGATAATACCCTATTATTGATACCCTGACTGCGTCATTG
GAAAGATTTGTCTGGCTAAGAAAACTGAATAAATAAAGGATTGGTCTGGT
TAATAGTAATAAAAGATTCCAGTCTTGACATTACCGAGCACATCAATCAC
TGTAACCATTATGTTTTTATGAAGAGCGGAAGANTATTACCGATCACATC
AATCACTGTAACCATTATGTTTTTATGAAGAGCGGAAGACATTTCTAGTT
GAATGGCGCTAACAAACATTGAATGTATTCCTTTATGTACGCCACAAACG
TTTGAACGTTTTTAAGCCAAATATAAATGGTCTTTTCATGATTTCTAAAA
GTTCTGTGGTTTTGCTCTGAAATAAAATAGTGAGGACCAACGgttaaatg
aagatttttttaagcttccGAGTACAAGCTATATACACTCTAATTACTTG
TATCTAATTATCTAATTACTTTCGATCTATTTTCTAGACAGTtaagaaat
taacaaaaaaactataaaaatggCGTCTTTATTTCCATCATTGAAACCAT
CGATCACCAATAAAGTGTGGTTTACAGTGGACCATAACAACATTGTGGAA
TCTGATGTGGAGTTGACCAAACAAGAAGAAGAATTCGCCAAACACGAAAG
TGATGATGTCAATCAAGGGAAGAATATCTTACCCattggaaaagaaaaag
aaaagattgaagATCACGGTGAGGAAGAAGAGGAGGAAGACGTTGAAGAT
GAATCGAATGAAGAAATGGAAGAAGAAGATACAGATGAAGTGGACACCGC
GTCTAATGGAGGAATGAGTGACTCCATCAATGAAGAAGAGATGTTTTAAG
CGTGAAATATGAAAGTGGGTACCGCATCTAATGGAGGAATGAGTGACTCC
ATCAATGAAGAAGAGATGTTTTAAGCGGGTACTGCTTCCAATAGAGGAAT
GAGCGACTCCATATCCGCGAAGGATGAAGTGGATATATCTTTCGGAAACT
CGCCAATGAGTGAAAACGAGATTTCAAGATGATATCTGTATTTGGCTTCT
TGTGGCTAAGTGATGATATTTCATTTTTGCTATCTTGCTTTTAAAAGTAT
CTTTCATATCAGCTCAAAATGATTAATGACAACAGCCAGAATACGAGCTC
TACTGGTAGTATACCACCCCCTCATGATACATTAACCTTGAGTAAATATC
TCAATATCTATTCGGTTTCTTCGTTGAGCCGAATGTAACTAGTTGATAAG
ACGATGTTGAGATTAACAAGGATGGAATACCTATGATAGTGTTAAAATGT
TCCAGGGattctgaaaaaaattcaagaacaaAGAGATAATCGTAACTTGT
TCGATGGTGATCTggaacttgtttttgtttttttttaagaggcGTTAAAA
CTTAACATATTTGTTTGGTCTTTTCTTATCATTTTGATAGGATAATTTAT
CAAGAAAATAGTTCAATTGTTCTctgtttttatgttttcattttcttttt
g
Run BLAST on NCBI

transcript from alignment at scaffold_361:867947..871953+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061909 ID=TCONS_00061909|Name=TCONS_00061909|organism=Clytia hemisphaerica|type=transcript|length=4007bp|location=Sequence derived from alignment at scaffold_361:867947..871953+ (Clytia hemisphaerica)
atccccagaatttattttgttataggggatgcgtatcgtgtatgaaattc
tcgtccgagagttacctcaaatttggggtaaccaaaatttgcataaattc
gCATAATGTCGtcacatccaatcaaagaaagaaaaaaatgaagtcatcgt
gctgttgttttcataattatcaattttcattcattgaacaaagaaaaaaa
gaagtcattgtattgctatgacgcataatcaaaaaagaaaaaagaaaaga
cgggggtaagttgggacagaaatattttagacgatacgcatcccctatat
caaatcatattagaggggatgcgtgcagcctagagACAAGAGTATTCGTT
ATATTAatgttatattttctttctAGATGATTTTGTTGATGAACATTTAC
ATGGATCAGCCCTTGGTCCTGATTGGAGCAGTAAACAAAAACTGAAAGGC
TTGTTAGAAGAAACAAGTGATAATCATACTAAACGACGAATAACTATCGA
ACACGAGTGTCAGATTACTGAAGTTTGGTGTGGTTCGAAAGATGAGAAAG
AACCTGAAAATGTATACGCTAGACTATCAAATCGGAAAGTTATCGGTGGT
GATTTTATTGTCAGTGCAACTGGAGTTCAACCATATGTACCTTTTGAGAT
AGATTCTCTGAGGCGATCCTCAGATGGAGGAATCCTAGTCGATGAGAACA
TGCAGACGAACCTGACAGATGTTTATGCTTGTGGTGATTGCTGTACTTCG
AACTGGCAACATAGTGAAACCTGGTTTCCAATGAAACTCTGGACACAAGC
CTGGCAAATGGGTTCTTATACTGGGAAATGTATAGTGAACGATATCGTTG
GTGAGGAATCGTCATTAGATATGTGTTTTGAATTATTCTCTCACGTGACT
ACGTTTTTCGGTTATAAAGTGTGTTTATTAGGTTGTTTTAATGGACAGAA
AATGGCGAACTCAGAGTATGAGGTCTTACTACGAGTGACGAATGATGTGG
AATATGTAAAGGTCGTTCTTAAGAATGGTCGAATGAAAGGATGTGTTCTC
ATCGGTGAAACTGACCTGGAAGAGACTTTTGAGAATTTGATACTGAATGA
ATTGGATGTTGGCTTCCTTGGTGAATCGTTGCTCCATCCTGGAGTAGATA
TTGAGGattattttgattgaaaaaataaatcgatttgCTATCTTTTTAGG
CTTCTTTTAGTATAGATGATCTTCTTTGGTAAGTATAGCACTTAGCAATT
TTGttaccgcagtcggaggcgacccgaaggcttctctttcgatagctacc
tacctgaaggtaggggagggcgccactctttctccctggattgctccact
tacccttgatccttcacTTAATTGCTGAACATTAAGCAGATAGACATCGA
gtgccattttgagaatctttggtgtgacccggctgggggttgatcccaca
accttgcgaaccgcagctggatgctctaccactgcactacggtcgcttca
GTGAATCATACAACAAGTTTTTCCCCATGTTCTGTTTCAGAGtataaaaa
ataagaatacaaaaataacaaagatgACCATCACTCAAAACAGGGATGGC
TCGAAATTGTGAAAAGCATTTTGTCAAATTAAATCGAGTCTTTCTTGAAG
AACAATGGAAAAGAGACGAGGAGCTGAAAAGACCACCTTTATATAAACTC
CAGACTGCTGAAGAAGTTCGGAAATGGATTCCGAGTATCTCCAAAGAGAT
TGATTATTGTTTGCGCCAGTTGAGCGGTGCTAGAGGACACGAATACCAAG
AGAGcaagaaaaaagatttcgaaCAGCGTGTtcaagatttggaaaaagaa
cGTAAAAGATTCATTCAGAAAGTCTATCAACTTGATCCAACACAGAAAGA
TAAAGGTGTGCCATGGCAACCGAAGTCATACGTCAGTAAACGGAAACTTG
AGAGCGTTAAGGATGGTGCTTATAGTTCGCCTACAACGAAAGTAGAAGAA
TCCAAAGAATCACCCAATGAAACAGTTCCAGcaaagaaaacgaaaagaaa
aCCAATTGTGTTGAATATTCTGAACAAAGAGAAGGAGGAGAATGGTGACG
AAGATTGATGAAACCTTAAAAAGTTTGTTCTCTCGAAATGAATATTAATG
ATGAGCTAAGGCGATAATACCCTATTATTGATACCCTGACTGCGTCATTG
GAAAGATTTGTCTGGCTAAGAAAACTGAATAAATAAAGGATTGGTCTGGT
TAATAGTAATAAAAGATTCCAGTCTTGACATTACCGAGCACATCAATCAC
TGTAACCATTATGTTTTTATGAAGAGCGGAAGANTATTACCGATCACATC
AATCACTGTAACCATTATGTTTTTATGAAGAGCGGAAGACATTTCTAGTT
GAATGGCGCTAACAAACATTGAATGTATTCCTTTATGTACGCCACAAACG
TTTGAACGTTTTTAAGCCAAATATAAATGGTCTTTTCATGATTTCTAAAA
GTTCTGTGGTTTTGCTCTGAAATAAAATAGTGAGGACCAACGgttaaatg
aagatttttttaagcttccGAGTACAAGCTATATACACTCTAATTACTTG
TATCTAATTATCTAATTACTTTCGATCTATTTTCTAGACAGTtaagaaat
taacaaaaaaactataaaaatggCGTCTTTATTTCCATCATTGAAACCAT
CGATCACCAATAAAGTGTGGTTTACAGTGGACCATAACAACATTGTGGAA
TCTGATGTGGAGTTGACCAAACAAGAAGAAGAATTCGCCAAACACGAAAG
TGATGATGTCAATCAAGGGAAGAATATCTTACCCattggaaaagaaaaag
aaaagattgaagATCACGGTGAGTAATGAAAGAAGGGGAGGAAGAGGAAA
AGAGGAAGTTTTGAGAAGAGGGAAGGGGGATTCTTAagaggaagaaagct
tggtgaagagaagaagaaagaagattgATGAAGGATATGGGAAAGGTGAT
GAAAAGAAAAGGGAAGAGCGATAGAGTACAGACAATGAAGTAAAAGCGGG
AGGTTATGAAGAACAAGAGAGACGGTTGGTGAAAAAAGGAGAGGGAAGTG
AATGATGAGAAGAAGGTGAAGAGGGAAGGGGAGGGAAGAGAGAGGGAGAT
GGATAGTGAAGGGAGGAGAGGGAAACCGATTAAGCAGAAGGGGAAGAATG
ACCAACCTTTCTTTCTTCTTCAAGGTGAGGAAGAAGAGGAGGAAGACGTT
GAAGATGAATCGAATGAAGAAATGGAAGAAGAAGATACAGATGAAGTGGA
CACCGCGTCTAATGGAGGAATGAGTGACTCCATCAATGAAGAAGAGATGT
TTTAAGCGTGAAATATGAAAGTGGGTACCGCATCTAATGGAGGAATGAGT
GACTCCATCAATGAAGAAGAGATGTTTTAAGCGGGTACTGCTTCCAATAG
AGGAATGAGCGACTCCATATCCGCGAAGGATGAAGTGGATATATCTTTCG
GAAACTCGCCAATGAGTGAAAACGAGATTTCAAGATGATATCTGTATTTG
GCTTCTTGTGGCTAAGTGATGATATTTCATTTTTGCTATCTTGCTTTTAA
AAGTATCTTTCATATCAGCTCAAAATGATTAATGACAACAGCCAGAATAC
GAGCTCTACTGGTAGTATACCACCCCCTCATGATACATTAACCTTGAGTA
AATATCTCAATATCTATTCGGTTTCTTCGTTGAGCCGAATGTAACTAGTT
GATAAGACGATGTTGAGATTAACAAGGATGGAATACCTATGATAGTGTTA
AAATGTTCCAGGGattctgaaaaaaattcaagaacaaAGAGATAATCGTA
ACTTGTTCGATGGTGATCTggaacttgtttttgtttttttttaagaggcG
TTAAAACTTAACATATTTGTTTGGTCTTTTCTTATCATTTTGATAGGATA
ATTTATCAAGAAAATAGTTCAATTGTTCTctgtttttatgttttcatttt
ctttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038821XLOC_038821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061909-exon-scaffold_361-1491911889:867947..870814TCONS_00061909-exon-scaffold_361-1491911889:867947..870814Clytia hemisphaericaexon
TCONS_00061909-exon-scaffold_361-1510915933:867947..870814TCONS_00061909-exon-scaffold_361-1510915933:867947..870814Clytia hemisphaericaexon
TCONS_00061909-exon-scaffold_361-1575043694:867947..870814TCONS_00061909-exon-scaffold_361-1575043694:867947..870814Clytia hemisphaericaexon
TCONS_00061909-exon-scaffold_361-1491911889:871171..871953TCONS_00061909-exon-scaffold_361-1491911889:871171..871953Clytia hemisphaericaexon
TCONS_00061909-exon-scaffold_361-1510915933:871171..871953TCONS_00061909-exon-scaffold_361-1510915933:871171..871953Clytia hemisphaericaexon
TCONS_00061909-exon-scaffold_361-1575043694:871171..871953TCONS_00061909-exon-scaffold_361-1575043694:871171..871953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:867947..871953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.4905	27.5331	20.9572	19.9704	8.69031	7.34653	10.0131	10.4985	7.15318	6.28288	6.78405	5.80024	5.61101	6.02842	6.53743	6.60853	7.86209	7.85725	4.79921	4.49291	5.60335	5.07076	16.8048	14.6364	8.20149	7.10418	6.0337	5.59343	7.47513	8.75603
Blast
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BLAST of TCONS_00061909 vs. Swiss-Prot (Human)
Match: PYRD1 (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=PYROXD1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 5.186e-70
Identity = 134/270 (49.63%), Postives = 173/270 (64.07%), Query Frame = 1 
Query:  403 GSALGPDWSSKQKLKGLLEETSDNHTK-----RRITIEHECQI--TEVWCGSKDEK------EPENVYARLSNRKVIGGDFIVSATGVQPYV-PF-EIDSLRRSSDGGILVDENMQTNLTDVYACGDCCTSNWQHSETWFPMKLWTQAWQMGSYTGKCIVNDIVGEESSLDMCFELFSHVTTFFGYKVCLLGCFNGQKMANSEYEVLLRVTNDVEYVKVVLKNGRMKGCVLIGETDLEETFENLILNELDVGFLGESLLHPGVDIEDYFD 1167
            GSALGPDW     LKG  E +   H +     ++I ++ E +I   + +   +D K      E   VY  L+N K+ G DFIVSATGV P V PF   +S     DGG+ VD++M T+L D+YA GD CT++WQ S  W  M+LWTQA QMG Y  KC+     G+   +D  FELF+HVT FF YKV LLG +N Q +  S++E++LR T   EY+KVV++NGRM G VLIGETDLEETFENLILN++++   GE LL P +DIEDYFD
Sbjct:  232 GSALGPDWHEGLNLKGTKEFSHKIHLETMCEVKKIYLQDEFRILKKKSFTFPRDHKSVTADTEMWPVYVELTNEKIYGCDFIVSATGVTPNVEPFLHGNSFDLGEDGGLKVDDHMHTSLPDIYAAGDICTTSWQLSPVWQQMRLWTQARQMGWYAAKCMAAASSGDSIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLG-SDHELMLRCTKGREYIKVVMQNGRMMGAVLIGETDLEETFENLILNQMNLSSYGEDLLDPNIDIEDYFD 500
The following BLAST results are available for this feature:
BLAST of TCONS_00061909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYRD15.186e-7049.63Pyridine nucleotide-disulfide oxidoreductase domai... [more]
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