TCONS_00062119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062119
Unique NameTCONS_00062119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062119 ID=TCONS_00062119|Name=TCONS_00062119|organism=Clytia hemisphaerica|type=transcript|length=436bp
NNTTTCACAGTTGGAGGTTGTCTTTTTGTTCCTTTTACATGAGCAAAACG
ACAGGATTCTGAAAAGCATTCTCCTTTCCGAAGGGAATCTAAACACATTT
TTTGATGAAAGTCCTTGCATTTAGTTCCAAGGTTACATCCTCTTGGTTGC
CTTGTTCCATGTTGTGTGAACTTGCGACACATTTTAGGGTGAGTGTAGTT
GCATTCCTTTCCTTTTAGGCCATGCTTGCATGTTCCacttttgtaaaatt
tgcagaTTTGGGATTTCTTTTCATTATCTTTAATTTCGCCTCttcttgtt
ttgttggtttCGTCATCTTCACTTTGTTTACCAGCAGAGAAATTATAATC
AGATGACTGGTCAATGTTGACAACATCAACATCAGTTGTTGAATCGGTTG
TGACTGTAAGGGTTGTATCCTGAGCTTCAGTATTTC
Run BLAST on NCBI

protein sequence of TCONS_00062119-protein

>TCONS_00062119-protein ID=TCONS_00062119-protein|Name=TCONS_00062119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
NTEAQDTTLTVTTDSTTDVDVVNIDQSSDYNFSAGKQSEDDETNKTRRGE
IKDNEKKSQICKFYKSGTCKHGLKGKECNYTHPKMCRKFTQHGTRQPRGC
NLGTKCKDFHQKMCLDSLRKGECFSESCRFAHVKGTKRQPPTVK
Run BLAST on NCBI

transcript from alignment at scaffold_361:938854..939289

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062119 ID=TCONS_00062119|Name=TCONS_00062119|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_361:938854..939289 (Clytia hemisphaerica)
GAAATACTGAAGCTCAGGATACAACCCTTACAGTCACAACCGATTCAACA
ACTGATGTTGATGTTGTCAACATTGACCAGTCATCTGATTATAATTTCTC
TGCTGGTAAACAAAGTGAAGATGACGaaaccaacaaaacaagaaGAGGCG
AAATTAAAGATAATGAAAAGAAATCCCAAAtctgcaaattttacaaaagt
GGAACATGCAAGCATGGCCTAAAAGGAAAGGAATGCAACTACACTCACCC
TAAAATGTGTCGCAAGTTCACACAACATGGAACAAGGCAACCAAGAGGAT
GTAACCTTGGAACTAAATGCAAGGACTTTCATCAAAAAATGTGTTTAGAT
TCCCTTCGGAAAGGAGAATGCTTTTCAGAATCCTGTCGTTTTGCTCATGT
AAAAGGAACAAAAAGACAACCTCCAACTGTGAAANN

Coding sequence (CDS) from alignment at scaffold_361:938854..939289

>TCONS_00062119 ID=TCONS_00062119|Name=TCONS_00062119|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_361:938854..939289 (Clytia hemisphaerica)
AATACTGAAGCTCAGGATACAACCCTTACAGTCACAACCGATTCAACAAC
TGATGTTGATGTTGTCAACATTGACCAGTCATCTGATTATAATTTCTCTG
CTGGTAAACAAAGTGAAGATGACGaaaccaacaaaacaagaaGAGGCGAA
ATTAAAGATAATGAAAAGAAATCCCAAAtctgcaaattttacaaaagtGG
AACATGCAAGCATGGCCTAAAAGGAAAGGAATGCAACTACACTCACCCTA
AAATGTGTCGCAAGTTCACACAACATGGAACAAGGCAACCAAGAGGATGT
AACCTTGGAACTAAATGCAAGGACTTTCATCAAAAAATGTGTTTAGATTC
CCTTCGGAAAGGAGAATGCTTTTCAGAATCCTGTCGTTTTGCTCATGTAA
AAGGAACAAAAAGACAACCTCCAACTGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038942XLOC_038942Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062119-proteinTCONS_00062119-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062119-exon-scaffold_361-1491911889:938854..939289TCONS_00062119-exon-scaffold_361-1491911889:938854..939289Clytia hemisphaericaexon
TCONS_00062119-exon-scaffold_361-1510915933:938854..939289TCONS_00062119-exon-scaffold_361-1510915933:938854..939289Clytia hemisphaericaexon
TCONS_00062119-exon-scaffold_361-1575043694:938854..939289TCONS_00062119-exon-scaffold_361-1575043694:938854..939289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:938854..939289 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.89779	5.13341	5.553	4.25544	16.6236	13.6048	11.3677	12.5842	4.73252	3.60198	2.62574	5.78675	3.91957	3.42003	3.19487	2.09525	0.938608	3.25936	0.78933	1.71158	3.66868	2.43898	2.25704	1.46626	2.68482	3.29469	2.03324	1.37227	0.867346	1.71704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top