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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062063 ID=TCONS_00062063|Name=TCONS_00062063|organism=Clytia hemisphaerica|type=transcript|length=669bp
GTTAAGTGCGGTTAGTTTCGTAACAGCTAATTAAGTTTTCGATGAGTTAC
AGTCATTCTCAATCAGACGGGAAGCTCGTCCATTACATCAGATAAAGGAA
CAAAGGCAAGGTGTTTCCCTTATTCGTGCTCagaagattttttcttcttc
taaaAGGAAAAGTTGTTTCATTTGGTTGGTAGTGTTGAAGGCGTCAGTTT
TATTTTGAGAGGTCTACAAATTTTGCGTGGTTTATTAATTGTATTTTTGT
GGATTCATTTTTGTTgaactatttttcttttccaattttagagaagaaca
aaaaaaaaatcttaatatattgaaaatagtttgtaaTATATATATCTaaa
aactgaaaatgactgaCAAAGGTAGATTATGGATCACATTACTATTAAAC
TATTTGGCGCTCTCGCAATCCTTTAATGTGGACAGCGAAGCCAATCGGTT
GGAGTTCTCCATTAGCGGTGGTTCCGGTGAAGACAAATCAAGTTTCTTTG
GTTATTCCATTGGTCTCTTCAAAACTTTAGCTGATGCAAGATTGATCATT
GGTGCACCGAACCATAGCAATCGAGCTGGAGCAGTCTATAGTTGCCGTGT
CAATGGTAATGATAATTCCTGCTCCAAGATGGACGCTGTGGCCAGCTCAA
ACACGGAAATACCTGGAAG Run BLAST on NCBI protein sequence of TCONS_00062063-protein >TCONS_00062063-protein ID=TCONS_00062063-protein|Name=TCONS_00062063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MTDKGRLWITLLLNYLALSQSFNVDSEANRLEFSISGGSGEDKSSFFGYS
IGLFKTLADARLIIGAPNHSNRAGAVYSCRVNGNDNSCSKMDAVASSNTE
IPG Run BLAST on NCBI transcript from alignment at scaffold_361:1542031..1544480- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062063 ID=TCONS_00062063|Name=TCONS_00062063|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at scaffold_361:1542031..1544480- (Clytia hemisphaerica)
GTTAAGTGCGGTTAGTTTCGTAACAGCTAATTAAGTTTTCGATGAGTTAC
AGTCATTCTCAATCAGACGGGAAGCTCGTCCATTACATCAGATAAAGGAA
CAAAGGCAAGGTGTTTCCCTTATTCGTGCTCAGAAGATTTTTTCTTCTTC
TAAAAGGAAAAGTTGTTTCATTTGGTTGGTAGTGTTGAAGGCGTCAGTTT
TATTTTGAGAGGTCTACAAATTTTGCGTGGTTTATTAATTGTATTTTTGT
GGATTCATTTTTGTTGAACTATTTTTCTTTTCCAATTTTAGAGAAGAACA
AAAAAAAAATCTTAATATATTGAAAATAGTTTGTAATATATATATCTAAA
AACTGAAAATGACTGACAAAGGTAGATTATGGATCACATTACTATTAAAC
TATTTGGCGCTCTCGCAATCCTTTAATGTGGACAGCGAAGCCAATCGGTT
GGAGTTCTCCATTAGCGGTGGTTCCGGTGAAGACAAATCAAGTTTCTTTG
GTTATTCCATTGGTCTCTTCAAAACTTTAGCTGATGCAAGGTAATTTAAA
GTTTGCAATTCTTCCAAAGTAGTTCTTCTCTTCGCTTTCATTTACTTTTA
GTTTTATTTCATATCTCAAAGAATATTTGGAGCATAGAAAAGAAAATTCA
AAAATCGTCCTCGAGAAACTTTTCCGTCATTTCATCATTGAAACAACATT
AAAGTTTTTAATCAATCATCTACCTTGAAGCTAATTAAAATAGGATGAAC
TGAGAGGAAATTAGGAACACTTTAGGGTTTAACAAATTGACGAATAAGCA
AAAAAGGGCAGAACTGACAAATAATCTCTGTAATCGAATACTAGCTCATG
CTAGTAATCTTCACTTTATGGAAAAAACATTAACCATGGAAATGAGGCAA
TTAAAATTTCAAAAAGCTTTAAAGTAATCGAAGGTTTTTTGAATTTTGAA
AAGCTTTTGCACAAAGGATCGTGCTAAGCTATAAGACCTTCTCTTTTTCA
AAACATTGACCATTTGACCCTTTAGACCACAAAATAGTTTTATTAATCGA
GTACAACTCGTATCTATTATTGGCTCTGACCACAAAAGTTTTAATGTAGC
ATCAGAAGTAATTTATAATATGGCAATATTGGTTTCACTTCAAGCCCTCA
TACCACAAGTTTTTAAAATGATGTACACGCGAACATGACCAATTAACCTA
TTATAAAGCTCGTGAGATAAAAGTAATTGCAACCAATTTTTCATTCATGC
TTCAAGCACTGTTACATATCTTATGTAATGCTGATTCTTTTGAAAAAATT
TGTCAATTGCAGAATTTTATCGCGTCTAACACACCTGGGGGTGACTGATA
ACTGATAAGAAATTGTTTTTTATTCCAACTTGTCATTAATATGATAATGT
ATGTCCTACTGTTTATGAAATAACAACATAGAATTGTTCAAGTTAGCTTT
ATAGCTTACACTGTCGAGGAGCACTTAAGGTCTTCAAATAATCTAAAAGA
TGACACATTAAAACGGTGTAATTTTAGAAAAAAGAAAAAAGAATCGCTTA
TCCAGGAGTAAGGAAATAGTTCATGATATTAGCATTCGTAAAATTTTCCC
ATTGGACTACTAATTAAGAATTTCATAATTTTGTAACATTATACATAATA
TTGAATCAATTTTTACCGTTGAAGTAAAGCTCCTTATTTGAAGATTTCTT
CAAATCAAAATAAATATCTAGGATGTAGAAAAATATAATTTCCGTGATCA
TTAAAGTTTTACTACCGGTAGTTGTGTAATTACAGTCTCCTTCATGAGTT
ATCTTTGACAAATAGCTACTTAAAAATGCAATTTATCATGTCGAAGTAAT
AATTTCAAATGACAATCTTGCCTACTCCTTGTCAATCCAAATAATTCTGA
AAAAAAGGAACCATTATTTTTCGATAAGAAAACTTGTTAACCTGCCCATT
AATGCCGTAGCTTATAGTTTTTTTGGCCCAACGCATCAACTGAGATTTCG
CTTCCCGCCGACTTCCCAACGGAACCTTAACGGAACTAATTTTGACGAGA
CAGCAATTTTTCTAAACTAACTTCGGGAAATTTCGGTAAACGCTCAACAA
GACCAGCGGCAAGGCTTCAGTACATCTGTTGCTCAGCTTTATTCTTATAT
TCGCAATATTCATCAGCACAAAAAGTTGATTTGCAGCCAGTCGATTTAAA
CCGTCTCTCATCTTATCTATCTATTCAGACTATTTTAGAATAATTCATAC
TCGAGTTTCATGGCCCGTTGCCAAAATAACTATCTTCGATGTCTTCAAAA
AATATTTCTTTTCTTTACCAGATTGATCATTGGTGCACCGAACCATAGCA
ATCGAGCTGGAGCAGTCTATAGTTGCCGTGTCAATGGTAATGATAATTCC
TGCTCCAAGATGGACGCTGTGGCCAGCTCAAACACGGAAATACCTGGAAG
Coding sequence (CDS) from alignment at scaffold_361:1542031..1544480- >TCONS_00062063 ID=TCONS_00062063|Name=TCONS_00062063|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_361:1542031..1544480- (Clytia hemisphaerica)
ATTGATCATTGGTGCACCGAACCATAGCAATCGAGCTGGAGCAGTCTATA
GTTGCCGTGTCAATGGTAATGATAATTCCTGCTCCAAGATGGACGCTGTG
GCCAGCTCAAACACGGAAATACCTGGAATGACTGACAAAGGTAGATTATG
GATCACATTACTATTAAACTATTTGGCGCTCTCGCAATCCTTTAATGTGG
ACAGCGAAGCCAATCGGTTGGAGTTCTCCATTAGCGGTGGTTCCGGTGAA
GACAAATCAAGTTTCTTTGGTTATTCCATTGGTCTCTTCAAAACTTTAGC
TGATGCAAGATTGATCATTGGTGCACCGAACCATAGCAATCGAGCTGGAG
CAGTCTATAGTTGCCGTGTCAATGGTAATGATAATTCCTGCTCCAAGATG
GACGCTGTGGCCAGCTCAAACACGGAAATACCTGGAATGACTGACAAAGG
TAGATTATGGATCACATTACTATTAAACTATTTGGCGCTCTCGCAATCCT
TTAATGTGGACAGCGAAGCCAATCGGTTGGAGTTCTCCATTAGCGGTGGT
TCCGGTGAAGACAAATCAAGTTTCTTTGGTTATTCCATTGGTCTCTTCAA
AACTTTAGCTGATGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062063-exon-scaffold_361-1575043694:1543941..1544480 | TCONS_00062063-exon-scaffold_361-1575043694:1543941..1544480 | Clytia hemisphaerica | exon |
| TCONS_00062063-exon-scaffold_361-1575043694:1542031..1542159 | TCONS_00062063-exon-scaffold_361-1575043694:1542031..1542159 | Clytia hemisphaerica | exon |
| TCONS_00062063-exon-scaffold_361-1510915933:1543941..1544480 | TCONS_00062063-exon-scaffold_361-1510915933:1543941..1544480 | Clytia hemisphaerica | exon |
| TCONS_00062063-exon-scaffold_361-1510915933:1542031..1542159 | TCONS_00062063-exon-scaffold_361-1510915933:1542031..1542159 | Clytia hemisphaerica | exon |
| TCONS_00062063-exon-scaffold_361-1491911889:1543941..1544480 | TCONS_00062063-exon-scaffold_361-1491911889:1543941..1544480 | Clytia hemisphaerica | exon |
| TCONS_00062063-exon-scaffold_361-1491911889:1542031..1542159 | TCONS_00062063-exon-scaffold_361-1491911889:1542031..1542159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1542031..1544480 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013519 | Int_alpha_beta-p |
Blast
The following BLAST results are available for this feature:
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