|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061957 ID=TCONS_00061957|Name=TCONS_00061957|organism=Clytia hemisphaerica|type=transcript|length=2424bp
tttcatttcattttgctaaaatttacaCTCTTTTATTGATGGATATTCTT
CAAGTGGTTTTAATTTAATCACACCACTTCTTATTTATAGAAAGAAAAGA
CAGAACAAGCTCCAGTTCTAGTGAGTGACGGGGACAAGTAAAAAACGAAA
ATGGGTCGAGAAGGTCCAAATAAAGCCGCTGGCTTCGTTATCTTTCGTCG
ACATGGAGAAAACAAGgagatttcttttttgatgCTTCAATCTTCAAAGA
ATAACTTGAATTGGACACCTCCGAAAGGACACGTGGAACGAGGGGAGTTA
GACATGGAGGCTGCTTATCGCGAAACGGAGGAAGAAGCGGGACTCACAGA
GAAGCAATTCCGTGTTTATCCAAACTTTCTTGCAGTTTTAGaatattctt
tcaaaggaaaaCCTAAGACGGTTGTTTATTGGTTAGCCGAGCTAAATGAT
TCGAATGCAAAAGTTAGACTATCACATGAACATATTGATTATAAATGGCT
GAGTTGTGAAGAGGCGTGTACAAAATCTGGTTATGCGGACATGCAAAAGG
TCTTAAGAAATAGTGTAACATTTATTGAAAGCCTTGGCGATGAAGGCTAG
CGTCTTAACCAGTTAACACAGTTAACAGtaataaaatttgtgaaataATC
ATATGTCTTGGGATTTTAGGTTTTGATTTGTGGGGCAGCAAGCAATTATC
CTTAAATACTTTACTTTTATGTTTTATAATTATCTTTCATTATGgttttg
tgtatttttaaatatttttgatcggTTTTACTTTATACAGATTTCTGATA
GACTTTATATGTatattgaaaaatgattttttaaaggAAAGCATTCATAC
AAAACACGAGCAGACCATGTGTTTGAAAAATATCCCGGGAATATCTCAAT
AAAAATTACATTATTCATGGAGGCTTCAAACTTTAACAATAGTGATTCTT
TTGTTATACaatcatcaattttaaattcaattctCTTCTTTAttgaataa
aatattaaaagtttatgaactttctttatacttttttcatattcGATTGA
ATAGTTTATTATAGACCGCGATAAAATGTAaaacaaatctttgaaaatat
ttaggctGGACGAAGTTGAGGTTGAGGATAAGCGATGTGACACGCAGACC
ACACTCACGAAGCGACCTAAATAGACATGGATGTGAATTTCGTTTGGGAA
AACAAAGACAAAGATGTAACTGATATCAATAAAGTGGAATTACTTCTGGC
AAAAGCACAATCTATATTTTCAGACCCGTTTTCAGACTATGAGAAAGCTG
AAGaaggaaatttgttgaaaagaaaagtgatgAGAAAAGCCTCTGAAAGC
AACGCTGATCTTTACGCCCTCACTGTTCACAACCTACCGATTGGTGTTTA
CCACTATATGTTTTTGGTGCGAACTGCAGAAAAAGAATGGTTATCCATCT
CAACAATTCAAAAGATCACAATGCTCGGACCAAGAAGAAAAGtgaattac
attgaacttgatcCAACAACACCGAAAAGCATCATTTCTTTCTCCGAATG
CATTGATGAGAACACACCATTGATGAACCCGCCTACCGCCATAAAGAATG
CGTCGCCATCCTCTGAACAACCTCGTCGGAGTTTCGCTTGTTTGTGCTGT
ACTAGGTGACGCGAAAAAATGTAACTTCACTATACCATTGAATGTCCCAC
ATCACCTGAAGACCTGGCAATACTCAAAGATTATTTGCTCCGGTTATAAC
CGTGTAGGACTGCAGAAAACTTTACAGAAAgagtataaaaatgaaaattt
aaaatgaagaGCTTGGAGGAAAACAAATAATAAAACGAAATGCCTTATAT
TGATAGTTTCACAAAATATGATGGCTGGAGGTACTTTTATGTCTTTATTA
CGAGACTGAAGAAAACCTTACCGGAAAATTATGACTGGtcactaaaaatg
aaaattaaaaagaaaaatacgaaCATTCAGAGATTATTCTGTAGAAGGAA
GATTGGACCATGGCTTGTACAAGGATCTTGTTTTACGTTGTTCGTATTTA
TATGTCTTTTAAACttgtaaatttttaactttaaataaATAAAGGGAAAG
CaagcataatttttgaaaagaaaattattttatcatGTCAATAAAATATA
TTATGAAAGCAACAAACGgttaaaaaaatagtttgacaaTTTACAATCTT
ACAAACACACAGCTTTAAAAAGTCACCCCCATCTttatatttacaaaata
aaaatctataaaTCTAGAATGAAAATAGTTCTAGTATAAAAATAGTTTCT
TAATCAATGTATAAAGTTAAAATTGTCTCCCAAATATAAAAATGTATGTA
CCTGCTGTCGTTCCGTTTGTTGACATATTTGACAGGATTCGAACGAGATT
CACCTTGTTCATCAGGGCTTCATT Run BLAST on NCBI protein sequence of TCONS_00061957-protein >TCONS_00061957-protein ID=TCONS_00061957-protein|Name=TCONS_00061957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MDVNFVWENKDKDVTDINKVELLLAKAQSIFSDPFSDYEKAEEGNLLKRK
VMRKASESNADLYALTVHNLPIGVYHYMFLVRTAEKEWLSISTIQKITML
GPRRKVNYIELDPTTPKSIISFSECIDENTPLMNPPTAIKNASPSSEQPR
RSFACLCCTR Run BLAST on NCBI transcript from alignment at scaffold_361:1707368..1712227+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061957 ID=TCONS_00061957|Name=TCONS_00061957|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at scaffold_361:1707368..1712227+ (Clytia hemisphaerica)
tttcatttcattttgctaaaatttacaCTCTTTTATTGATGGATATTCTT
CAAGTGGTTTTAATTTAATCACACCACTTCTTATTTATAGAAAGAAAAGA
CAGAACAAGCTCCAGTTCTAGTGAGTGACGGGGACAAGTAAAAAACGAAA
ATGGGTCGAGAAGGTCCAAATAAAGCCGCTGGCTTCGTTATCTTTCGTCG
ACATGGAGAAAACAAGgagatttcttttttgatgCTTCAATCTTCAAAGA
ATAACTTGAATTGGACACCTCCGAAAGGACACGTGGAACGAGGGGAGTTA
GACATGGAGGCTGCTTATCGCGAAACGGAGGAAGAAGCGGGACTCACAGA
GAAGCAATTCCGTGTTTATCCAAACTTTCTTGCAGTTTTAGaatattctt
tcaaaggaaaaCCTAAGACGGTTGTTTATTGGTTAGCCGAGCTAAATGAT
TCGAATGCAAAAGTTAGACTATCACATGAACATATTGATTATAAATGGCT
GAGTTGTGAAGAGGCGTGTACAAAATCTGGTTATGCGGACATGCAAAAGG
TCTTAAGAAATAGTGTAACATTTATTGAAAGCCTTGGCGATGAAGGCTAG
CGTCTTAACCAGTTAACACAGTTAACAGtaataaaatttgtgaaataATC
ATATGTCTTGGGATTTTAGGTTTTGATTTGTGGGGCAGCAAGCAATTATC
CTTAAATACTTTACTTTTATGTTTTATAATTATCTTTCATTATGgttttg
tgtatttttaaatatttttgatcggTTTTACTTTATACAGATTTCTGATA
GACTTTATATGTatattgaaaaatgattttttaaaggAAAGCATTCATAC
AAAACACGAGCAGACCATGTGTTTGAAAAATATCCCGGGAATATCTCAAT
AAAAATTACATTATTCATGGAGGCTTCAAACTTTAACAATAGTGATTCTT
TTGTTATACaatcatcaattttaaattcaattctCTTCTTTAttgaataa
aatattaaaagtttatgaactttctttatacttttttcatattcGATTGA
ATAGTTTATTATAGACCGCGATAAAATGTAaaacaaatctttgaaaatat
ttaggctGGACGAAGTTGAGGTTGAGGTGAGGACAGATAtcgatttggaa
atttttgtgaGGTCAAGAAAAGGTGTAATGTTTGAAATCGTTAAATTGCT
TCGAGTTACCGATAGTTCAAGTAACGAAAAGGAAAAATAGCCTAAAGGGT
TTCTTTGGGGACAAATTGTTCGAGAAAAGAATTTCTGGCATCTCACAGAA
AAGTTCCATACCACTGTCTGCAAAATGACCCTACTTAGTACTTACTACAC
TATATACATAAAAACCTCTCCATCCCCTATATAGGCTAGTATGGAGGTCA
ATTAAAACTCtcctttcttttcaaattctgttttgaattaaTCACGATTA
AATTAGAGATGTTTATGACAAGAAATTGTTCGTGCTATGTTATGATTAAT
AAGTCTCGTCAATGACATTCCATTCCGCTGTTGTTTTGTTTCGATCATTT
GTCCCATTTACTGTTAACAGACgtaaatgtttattttggattttgaaacc
AAAACCATTACTAGCTGAACGgagtgattattttttaattctaCCTTACT
GTACAATTTTGTTGGTGTATCGTTTGTAAAAAGTATTTGCACAGATTTAC
TAGAACGTAGCATGCATAAAGTTAGTGATGCATGCCGGTTGATCTAtgaa
aaaatatctcaaaagtTTAATCTAGTTAGGTTATCTTGATTAAAACGAAG
CACGTTTCTTCCACTTCAAGGCGTCGAAAACTGTCTGAAAATTTTTGTGA
GTCACCCAGTAGTGTAAATCTAACACGTTCTTGCGAAGAGTCCTGCCAAA
ATAGCCAGTAGAATACAAAATACTAAAATACCTTagtaaaacagctttaa
aagcaTGTATACTTATCAAGAAGATTTGTTTAATTTTCTAGAGACTTTGT
AAAATGATATTACCCAACTTTTGAATCAGTTATTAATAAGGAagacgttt
ataaggaacttgaggctgaaaatggccCCAagaataaggaattgttaagg
aactggtcaggctgagaataaggaAAATAGAGAgttaaacttaaacttta
aCACATTTACACACCCCCTTCTTACAGACCTGGCAGGATTTTTTCATCCA
GTGGGGTTAAAAAACGGACTGAAACACGATGGGGATTAATGTTCCCACAT
ttcttatggctggggattgaaattctttttagttttcaagtcaaaattca
gttgggatgggggaaatagcataatattttgcagtggggattggtttatt
tgattattttcagtggggacacaAATTGGAGAATCATTTTCGATCGGgaa
gatattttgaccaatttttccagtgaaagggtcccagtgggtctgtgaga
atttACAAAAGCCTGAACAAAAAAAAGACGAAATATATTGACGAAACAAC
ATTCAATAAACGTCTTTTTCAGTACTGTACACTGTAGTCCATTGTTATAC
TTTTACATAGATTACATACTTAGCAAATCCAATCTTAGCAGCttagtaaa
taaggaactcgataaggaactttgaggctgaaattctctggaaaaataag
aaagtgctggagaaaattgataaaaaataattgaatagaAGACCCACATT
TTCGTTTAGGATAAGCGATGTGACACGCAGACCACACTCACGAAGCGACC
TAAATAGACATGGATGTGAATTTCGTTTGGGAAAACAAAGACAAAGATGT
AACTGATATCAATAAAGTGGAATTACTTCTGGCAAAAGCACAATCTATAT
TTTCAGACCCGTTTTCAGACTATGAGAAAGCTGAAGaaggaaatttgttg
aaaagaaaagtgatgAGAAAAGCCTCTGAAAGCAACGCTGATCTTTACGC
CCTCACTGTTCACAACCTACCGATTGGTATGAATGAGTTTCACTTGTTTT
ACATATATCTCACCATTGTATTACCAAAAACCTTCTCTNATGAATGAGTT
TCACTTGTTTTGCATATATCTCACCATTGTATTAAAAAAAGTTCTAGtgg
gactgtgagacaggggtgtagttGGGGGCCTAGTTGTAGTAGCTGATAAA
GAGATGACACGAAGAGAAAGCTTTCTTTTCTATAATCCAAAAGGAAAACA
GCAAGAGAATACAAGAAACAAAATAACCTAATGAGTTCATTTTGTGCCAA
AACACTTTATTGTGGTGATAATTGGATGTAAATGCAAATCTTATTAGACA
GAAACCAtacttctttttataagcactcTAACACCCACTCACACGTGTAT
TGTTCTATTTGTAGGTGTTTACCACTATATGTTTTTGGTGCGAACTGCAG
AAAAAGAATGGTTATCCATCTCAACAATTCAAAAGATCACAATGCTCGGA
CCAAGAAGAAAAGtgaattacattgaacttgatcCAACAACACCGAAAAG
CATCATTTCTTTCTCCGAATGTAAGTTAGAAACACTCCCTCCTTTAATCA
TCATACGAAGGACGACTTCcccgggggggagggggtacttaggcaaatgg
agggtacggtatgtgccgcccttaagggtaccttttttggatttccaaag
tccaaagTCCCACTACTTCTTATCATAACTATTATAACCTTGATACCATC
GTCCTATATGCAGTTGGGAtccttgaatattttttaagcttttcCCGTAG
GGATGACGAAAAAGGGACAAAATCCCCCAAGGTCTCACTGAGTCAGTGAC
ACAGATGTGTATTATGGAATAAAGGCGAGAGAAGAATAGGTGAAGAAGAA
CTCTTTGAATCAATTTGTTCTCAACTCTTCATCAGAAAATAAAACTCAGC
TACTATTTTATCATTAGGATCGACAAGTCTCCGACTCCTACTATAGTAGA
AAAAAGGGCATAATTGTTGACATTACATTTTGTAGGCATTGATGAGAACA
CACCATTGATGAACCCGCCTACCGCCATAAAGAATGCGTCGCCATCCTCT
GAACAACCTCGTCGGAGTTTCGCTTGTTTGTGCTGTACTAGGTGACGCGA
AAAAATGTAACTTCACTATACCATTGAATGTCCCACATCACCTGAAGACC
TGGCAATACTCAAAGATTATTTGCTCCGGTTATAACCGTGTAGGACTGCA
GAAAACTTTACAGAAAgagtataaaaatgaaaatttaaaatgaagaGCTT
GGAGGAAAACAAATAATAAAACGAAATGCCTTATATTGATAGTTTCACAA
AATATGATGGCTGGAGGTACTTTTATGTCTTTATTACGAGACTGAAGAAA
ACCTTACCGGAAAATTATGACTGGtcactaaaaatgaaaattaaaaagaa
aaatacgaaCATTCAGAGATTATTCTGTAGAAGGAAGATTGGACCATGGC
TTGTACAAGGATCTTGTTTTACGTTGTTCGTATTTATATGTCTTTTAAAC
ttgtaaatttttaactttaaataaATAAAGGGAAAGCaagcataattttt
gaaaagaaaattattttatcatGTCAATAAAATATATTATGAAAGCAACA
AACGgttaaaaaaatagtttgacaaTTTACAATCTTACAAACACACAGCT
TTAAAAAGTCACCCCCATCTttatatttacaaaataaaaatctataaaTC
TAGAATGAAAATAGTTCTAGTATAAAAATAGTTTCTTAATCAATGTATAA
AGTTAAAATTGTCTCCCAAATATAAAAATGTATGTACCTGCTGTCGTTCC
GTTTGTTGACATATTTGACAGGATTCGAACGAGATTCACCTTGTTCATCA
GGGCTTCATT Coding sequence (CDS) from alignment at scaffold_361:1707368..1712227+ >TCONS_00061957 ID=TCONS_00061957|Name=TCONS_00061957|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at scaffold_361:1707368..1712227+ (Clytia hemisphaerica)
ATGGATGTGAATTTCGTTTGGGAAAACAAAGACAAAGATGTAACTGATAT
CAATAAAGTGGAATTACTTCTGGCAAAAGCACAATCTATATTTTCAGACC
CGTTTTCAGACTATGAGAAAGCTGAAGaaggaaatttgttgaaaagaaaa
gtgatgAGAAAAGCCTCTGAAAGCAACGCTGATCTTTACGCCCTCACTGT
TCACAACCTACCGATTGGTGTTTACCACTATATGTTTTTGGTGCGAACTG
CAGAAAAAGAATGGTTATCCATCTCAACAATTCAAAAGATCACAATGCTC
GGACCAAGAAGAAAAGtgaattacattgaacttgatcCAACAACACCGAA
AAGCATCATTTCTTTCTCCGAATGCATTGATGAGAACACACCATTGATGA
ACCCGCCTACCGCCATAAAGAATGCGTCGCCATCCTCTGAACAACCTCGT
CGGAGTTTCGCTTGTTTGTGCTGTACTAGGTGAATGGATGTGAATTTCGT
TTGGGAAAACAAAGACAAAGATGTAACTGATATCAATAAAGTGGAATTAC
TTCTGGCAAAAGCACAATCTATATTTTCAGACCCGTTTTCAGACTATGAG
AAAGCTGAAGaaggaaatttgttgaaaagaaaagtgatgAGAAAAGCCTC
TGAAAGCAACGCTGATCTTTACGCCCTCACTGTTCACAACCTACCGATTG
GTGTTTACCACTATATGTTTTTGGTGCGAACTGCAGAAAAAGAATGGTTA
TCCATCTCAACAATTCAAAAGATCACAATGCTCGGACCAAGAAGAAAAGt
gaattacattgaacttgatcCAACAACACCGAAAAGCATCATTTCTTTCT
CCGAATGCATTGATGAGAACACACCATTGATGAACCCGCCTACCGCCATA
AAGAATGCGTCGCCATCCTCTGAACAACCTCGTCGGAGTTTCGCTTGTTT
GTGCTGTACTAGGTGAATGGATGTGAATTTCGTTTGGGAAAACAAAGACA
AAGATGTAACTGATATCAATAAAGTGGAATTACTTCTGGCAAAAGCACAA
TCTATATTTTCAGACCCGTTTTCAGACTATGAGAAAGCTGAAGaaggaaa
tttgttgaaaagaaaagtgatgAGAAAAGCCTCTGAAAGCAACGCTGATC
TTTACGCCCTCACTGTTCACAACCTACCGATTGGTGTTTACCACTATATG
TTTTTGGTGCGAACTGCAGAAAAAGAATGGTTATCCATCTCAACAATTCA
AAAGATCACAATGCTCGGACCAAGAAGAAAAGtgaattacattgaacttg
atcCAACAACACCGAAAAGCATCATTTCTTTCTCCGAATGCATTGATGAG
AACACACCATTGATGAACCCGCCTACCGCCATAAAGAATGCGTCGCCATC
CTCTGAACAACCTCGTCGGAGTTTCGCTTGTTTGTGCTGTACTAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061957-exon-scaffold_361-1491911889:1707368..1708493 | TCONS_00061957-exon-scaffold_361-1491911889:1707368..1708493 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1510915933:1707368..1708493 | TCONS_00061957-exon-scaffold_361-1510915933:1707368..1708493 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1575043694:1707368..1708493 | TCONS_00061957-exon-scaffold_361-1575043694:1707368..1708493 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1491911889:1710077..1710343 | TCONS_00061957-exon-scaffold_361-1491911889:1710077..1710343 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1510915933:1710077..1710343 | TCONS_00061957-exon-scaffold_361-1510915933:1710077..1710343 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1575043694:1710077..1710343 | TCONS_00061957-exon-scaffold_361-1575043694:1710077..1710343 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1491911889:1710732..1710887 | TCONS_00061957-exon-scaffold_361-1491911889:1710732..1710887 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1510915933:1710732..1710887 | TCONS_00061957-exon-scaffold_361-1510915933:1710732..1710887 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1575043694:1710732..1710887 | TCONS_00061957-exon-scaffold_361-1575043694:1710732..1710887 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1491911889:1711353..1712227 | TCONS_00061957-exon-scaffold_361-1491911889:1711353..1712227 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1510915933:1711353..1712227 | TCONS_00061957-exon-scaffold_361-1510915933:1711353..1712227 | Clytia hemisphaerica | exon |
| TCONS_00061957-exon-scaffold_361-1575043694:1711353..1712227 | TCONS_00061957-exon-scaffold_361-1575043694:1711353..1712227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1707368..1712227 + |
Blast
BLAST of TCONS_00061957 vs. Swiss-Prot (Human)
Match: AP4A (Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Homo sapiens GN=NUDT2 PE=1 SV=3) HSP 1 Score: 136.732 bits (343), Expect = 1.214e-36 Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 172 KAAGFVIFRR----HGENKEISFLMLQSSKNNLNWTPPKGHVERGELDMEAAYRETEEEAGLTEKQFRVYPNFLAVLEYSFKGKPKTVVYWLAELNDSNAKVRLSHEHIDYKWLSCEEACTKSGYADMQKVLRNSVTFIESL 585
+A G +IFRR +N I FL+LQ+S +WTPPKGHVE GE D+E A RET+EEAG+ Q + F L Y + KPKTV+YWLAE+ D + ++RLSHEH Y+WL EEAC + + +M+ L+ F+ S+
Sbjct: 4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCSI 145
The following BLAST results are available for this feature:
|
