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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062172 ID=TCONS_00062172|Name=TCONS_00062172|organism=Clytia hemisphaerica|type=transcript|length=1715bp
AAGAGAGAGCTTTAAATCTTGTGTTCAGGGCCTAAAGAAGGTCACTGTAG
TGTTTTGCTGTTTGGTGGGTTGAGGAGGAGATCTAAATTGGAAAATCACT
CAAAATATGTTTATCACAGAATTAAAGACTGCATAAATTACCGGCTCAGA
GGTAGCCCGGGTGTACTTGCTTAATGATCATTGActatagaaaatgaatt
tcgggtctttcatttttctttttcttttttttttcagaacatGATCTCAT
CGGAATGTTCGTCTCATTTCATTGCTGCATACCACGATCTACAACAAAGT
AGTTGGGAGCCCAGCATCAACGATCAACAAGCCAGCAAAGATGGTGATGG
TGCTATACGAAAACAAAGCAAAGATGAGGTCATCAACGGTGCAgtaatga
ttaaaaacatcgaGAATATACCAGTCATTATCGGCGATTTAAAAACAACC
AATCAGAATCCACAACGTGAAGAGAGCACCGATGACGTATTTGACAGTGA
CGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAGCTTCTTGCGATGTTC
CTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGAACGTCAATCAATGCC
GATTTCCTATCCCCCATACGTATGGATCGATTAGATCGCTCACACAGGCG
AGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGCGAGTGTTATCAGCTC
AATTACAAGATCAACGCTCAAATGCGTCTAGTCGTAGTGAGAACTCAGTG
ATGGGATTTGATAGCGAGTACGGTGGCAGCCAATCAAATGACAGCAGTGA
CAATGAAAGCGAACCGGAAGACAAAATCGATTTCCAAAACATTACACCAC
AATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTAAGTGGCGTCGACCCA
CCACCGGATCCTAAAATGCTAACCGCCCATCAATCAAAGGTAGGAGCCCT
GAAACCGCCCCTAACGAATCGACGAATGAGCGTAGATACCTATATGGGAA
TGAATGAAAAAACTGACAACAGTAGACCATCGCGTCGATTTTCAGTGATG
ACTAAAAAGACGAATTTACCGAAAATCGAAACTGGTGGATATTTAGTGAA
CCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAGTACCTGAACGGCGTA
GTAGCGTCTCCCCTTCGAATTTTAACCATGATGCCCCAGTTAGAGACGTG
CGTTTGAATAGACCAATAGACGGGCAACTTGTGCGCCGTGCTTCTAGAGT
AATATCAAAGGTTGAACAAGACTTGATTGagaaagaattaaaatttctgG
GAATTACTAAAGACAAGAAAGACCCTTTGGCTGATATTCGAAAATGCCGT
TATCTAAGAATTAACCATGACCCTAACAATGATGATAAATGCCCGTGTAA
TAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGAGATCTCGGTCACATT
CCGGTTCCACTTGCTGATGGTATCGTATGATTCGTTGGTTAATGTTTGAA
ATAGTCATTTTCGTTCTAGAAAATTCACCTAAAAAGTTAGTTGTCAAAAT
TCTGAATTATTTCTCAGGTTAACGTTTTTAGAAAAGTCTTTTAAAATCTA
ATACGTGACTGCTAGTTTCACACtactttcaattcttttttttgaaaaaa
ctcaagGGCAGAAAGAGTTCCCTAATATCCCGcagttttcaattttaaag
CCTTTTTATGATCGG Run BLAST on NCBI transcript from alignment at scaffold_362:223331..225045+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062172 ID=TCONS_00062172|Name=TCONS_00062172|organism=Clytia hemisphaerica|type=transcript|length=1715bp|location=Sequence derived from alignment at scaffold_362:223331..225045+ (Clytia hemisphaerica)
AAGAGAGAGCTTTAAATCTTGTGTTCAGGGCCTAAAGAAGGTCACTGTAG
TGTTTTGCTGTTTGGTGGGTTGAGGAGGAGATCTAAATTGGAAAATCACT
CAAAATATGTTTATCACAGAATTAAAGACTGCATAAATTACCGGCTCAGA
GGTAGCCCGGGTGTACTTGCTTAATGATCATTGActatagaaaatgaatt
tcgggtctttcatttttctttttcttttttttttcagaacatGATCTCAT
CGGAATGTTCGTCTCATTTCATTGCTGCATACCACGATCTACAACAAAGT
AGTTGGGAGCCCAGCATCAACGATCAACAAGCCAGCAAAGATGGTGATGG
TGCTATACGAAAACAAAGCAAAGATGAGGTCATCAACGGTGCAgtaatga
ttaaaaacatcgaGAATATACCAGTCATTATCGGCGATTTAAAAACAACC
AATCAGAATCCACAACGTGAAGAGAGCACCGATGACGTATTTGACAGTGA
CGAAGATACTTCTAGTCGTAAAGACCAGCCTTTAGCTTCTTGCGATGTTC
CTTCGTTTTGGAAGAAAGACATGCGAGATCGTCGAACGTCAATCAATGCC
GATTTCCTATCCCCCATACGTATGGATCGATTAGATCGCTCACACAGGCG
AGCGTCTTTGAACCCTGAAGGCTTTCAGGGATTGCGAGTGTTATCAGCTC
AATTACAAGATCAACGCTCAAATGCGTCTAGTCGTAGTGAGAACTCAGTG
ATGGGATTTGATAGCGAGTACGGTGGCAGCCAATCAAATGACAGCAGTGA
CAATGAAAGCGAACCGGAAGACAAAATCGATTTCCAAAACATTACACCAC
AATCGAACGCTCTGTTGCAACGTCGGCGCCGGTTAAGTGGCGTCGACCCA
CCACCGGATCCTAAAATGCTAACCGCCCATCAATCAAAGGTAGGAGCCCT
GAAACCGCCCCTAACGAATCGACGAATGAGCGTAGATACCTATATGGGAA
TGAATGAAAAAACTGACAACAGTAGACCATCGCGTCGATTTTCAGTGATG
ACTAAAAAGACGAATTTACCGAAAATCGAAACTGGTGGATATTTAGTGAA
CCAAAACACTTTGAAAACTGGCTCCGTTAGGCCAGTACCTGAACGGCGTA
GTAGCGTCTCCCCTTCGAATTTTAACCATGATGCCCCAGTTAGAGACGTG
CGTTTGAATAGACCAATAGACGGGCAACTTGTGCGCCGTGCTTCTAGAGT
AATATCAAAGGTTGAACAAGACTTGATTGagaaagaattaaaatttctgG
GAATTACTAAAGACAAGAAAGACCCTTTGGCTGATATTCGAAAATGCCGT
TATCTAAGAATTAACCATGACCCTAACAATGATGATAAATGCCCGTGTAA
TAAATGTGAAAAAGAAAGCGGCACCTTTTCGCCGAGATCTCGGTCACATT
CCGGTTCCACTTGCTGATGGTATCGTATGATTCGTTGGTTAATGTTTGAA
ATAGTCATTTTCGTTCTAGAAAATTCACCTAAAAAGTTAGTTGTCAAAAT
TCTGAATTATTTCTCAGGTTAACGTTTTTAGAAAAGTCTTTTAAAATCTA
ATACGTGACTGCTAGTTTCACACtactttcaattcttttttttgaaaaaa
ctcaagGGCAGAAAGAGTTCCCTAATATCCCGcagttttcaattttaaag
CCTTTTTATGATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062172-exon-scaffold_362-1491911889:223331..225045 | TCONS_00062172-exon-scaffold_362-1491911889:223331..225045 | Clytia hemisphaerica | exon |
| TCONS_00062172-exon-scaffold_362-1510915933:223331..225045 | TCONS_00062172-exon-scaffold_362-1510915933:223331..225045 | Clytia hemisphaerica | exon |
| TCONS_00062172-exon-scaffold_362-1575043694:223331..225045 | TCONS_00062172-exon-scaffold_362-1575043694:223331..225045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:223331..225045 + |
Blast
The following BLAST results are available for this feature:
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