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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062229 ID=TCONS_00062229|Name=TCONS_00062229|organism=Clytia hemisphaerica|type=transcript|length=2229bp
GtggtgaaaatgaaaacaagctaTTAGCGTTTACTGTTGAATTCATGCTA
TGCTTCcattattgaagaaaaaaactttaattttttgaatgCATGCGAAG
GAGGCATAGACAGACATAGCCCAAAATAATTAACatcgctaattaatttt
ttggggCTTTTGGTTTTGTCTCTTTTGACATAACTTGTTTTAATATCTTC
TTGTGTATATATTGtatagaaaattaaaatttataaaAATGCATTGGTCT
CAAGGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTCGGCGTTCAAGA
AACTTCAACACAGATGCAAATGGGAGGAGATATGAATAGAATACTTCCAG
ATTGGCCAAAGATTGGTGACAGAATCACACAACCCTTTCTCGATCAATTG
ATGGTCAGTCAACTGTTGGAACAGAATCTGACTCTCGGATTCTTCTTAAA
AGGACTTAACGGACCACCAGGTCCTCCAGGACCACCAGGACCATCTGGAG
AACCAGGAGCCCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTT
GGTGAAGATGGTGCCCCTGGTCCAATGGGACCACCAGGCTTATCTGGAGG
CCCTGGTATGCCCGGATACCCAGGAGAGAAAGGAGATCCAGGACCATCAG
GTTTACCTGGATCCGCCGGTCTGCCTGGTGCCCCTGGTCTACCTGGACCA
CAGGGATCAGCTGGAGATTCAGGACCTGAACCAATCAAACCGGAGTTCAC
TGTTGCATGCGAAGGACAAAAACTTTGGATTCAGTGTCAACAATACGAAT
TGATCAAGATCAAAGAAGCATACTGGGGTCGTGAGGACCACGTTACCTGT
TCTGATACACCGGCCGGTCTGAGCCGTGAAGTCTGTGACGCCAACAGTGA
TAATGCCTTCACAAAGGTAGATGCACAATGCAAAGGTCAACAAAATTGTG
AAGTTGTCGCCTCCAATATTTTCTTTGACGATAACAGTTGTGGAAACGTt
tataaatatttgaaagtGAAATACGAATGCGAGGCTGACCAGCAGAACAG
CATGGACGTCTTGAAAGAAGGCGGTCGCCGACGACGAAAGAAGAAGCGTG
ACACCAAAGAGAAGCGATCCTTCAGGGATTCATAAATAGAACTCTCTCAC
TTTCTCCTACAAAATGTCCATGCGCGcaaaactttctatttttttgacGA
AAACAAAACTTCTGAAGACTTTTTTTACAGGACTTAATAGAACCAACTTT
ATGGTGTATCATCGAAACCATGGATcagcaaaatttattttttgctcaaa
gcAGTATAAATATTATCGACGGTAGAGAAGTGTGGTGTAATATTTAGATT
AGGCCATATTACTTGCTATGTCTCCAAGTTATAGAGTTTAAAAActaaac
aatatatttttctatgAATTTTATATTCTATTTTGTTATGAAAATACTGG
GAACTATTCTATATGCATAAGCAAACGTTGCAATTCTTTATCATCTTCCT
CGGCCAAAATTTACAGTAAATCAAGCATCTTCCTATTTGCGGGAGAAAGC
AATAAATACTAGTACAGTAGCTTAAAGGATACTGTAGATTGTCCTACATC
TTAGTTATACCCTTCTTGTTTGGCTAAAGTCGCAAAATTTCATCAACAAA
AACAGAAATCGGAATTTCAGGATTTCATAGTCGCTGTTTATTGCGATGAG
ATGGTGGTCAGAGGATAAGGAAATTTTAGACTGGGCAATTTAAAGTATCG
TTTTTCAATTGTACATATCTTCAAAACTGAAACCCAAAACAATAAATTTG
ACAAACACAAGTTTCTTTACAGATATGATAGTTTACaaatttttatagca
aaatttgatataatatttttttacatatttttttgaaaaatgtgactTTG
AGTGCCCTCGTTATCCCTTATGAGTTCAGAATGGACGGACTAAAAACCAT
ACGGGGTACACACCCAAAGAATATGCAtttataaagtaaaaatttgatat
ttttataacTGATAAATTATTattccatatttacaaaaaaaatatactcT
TGTATTTTATgaagttatatttttttaaatttttttggaattttgtgttt
ttgttgtaaaattttgtgCAGTGACATCCCTTACTATATagatttatata
aaaaagagtgtagaaattaatttggtaaaatttgaaattaatccCGTCTA
CTCCTTTTggaattgacaaaaaatctcAG Run BLAST on NCBI transcript from alignment at scaffold_362:228433..234495- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062229 ID=TCONS_00062229|Name=TCONS_00062229|organism=Clytia hemisphaerica|type=transcript|length=6063bp|location=Sequence derived from alignment at scaffold_362:228433..234495- (Clytia hemisphaerica)
GTGGTGAAAATGAAAACAAGCTATTAGCGTTTACTGTTGAATTCATGCTA
TGCTTCCATTATTGAAGAAAAAAACTTTAATTTTTTGAATGCATGCGAAG
GAGGCATAGACAGACATAGCCCAAAATAATTAACATCGCTAATTAATTTT
TTGGGGCTTTTGGTTTTGTCTCTTTTGACATAACTTGTTTTAATATCTTC
TTGTGTATATATTGTATAGAAAATTAAAATTTATAAAGTAAGTTGGCATT
TATTTTAACTTTGATGGTTGTATTGATGGATTTTTTTTTGGGATATTATT
TTTCTCATTTGATCGGATTCGATTGCCAATGTTTTTGTTACTTTCGATGA
TTTGGTTTCCCAGCTCATAGTTAAAAGATTATTATAAATTTATTACCTGT
CCTGCTTTAATCATTTTGGCTTCTGGTAGAATTGTTTTTATCATTGGGTC
AAACTCCCGTCAAACTTTAATAAAATTTATATTGAATACAAACTTCAACT
TCAACCTCTTCTAGCCTAAATATTCCTTGAAATACATAACAATCAAGATA
TTTCACCCCCTGTAAAATTATATTTTCTCAATGCCATGGCTTTTTTATGA
TGAAGGATTCAGGTTCTATAATTTTGCATAAAAATAACATTGTTTTTTTC
TCGTACCTTAGAATGCATTGGTCTCAAGGCCTTGTGTGCCTGCTATTTGC
CGTCTTGAGTTTCGGCGTTCAAGAAACTGTAAGTAAATTCATTCTTAAAA
ATTGTTTCTTTTAAAAACTTTTCTTCGTCTTTATTTTCGATATCCTAGGT
AGATACAAAACTCAATATTTTCCATTTCCAAAAACCATTTTTATCTTCAA
GAAGCAATCTTTTTCTTTTTGAAAACTTATCTTTTATCTCCAGAAAGGGT
CTTTCATTTTTGTATCTACTTAAGAAAACCACGGTTAAGACACGCTAATT
TGATACTCATTGAATTACTAAAGTCCTAAAGTGAAATTAGTCTATGGTAT
TGTACCGAATTCTTTTGGACCCAGACCTTTTTTCCATGAGATTAAGGTTG
ACAAGACTAGGGTGTGTAAATTAACTTTTTTACATTTACAACATAACAAA
CACATACCTTTTACTCATAACATAACATAACATCACTTGACAATATCTTT
ACACATCTACCATCACATTACATTCACTGACCACCATTGAGATTTGACCA
TGACACCAACATTGAGGTATTTACAAAACAGCACCTGAAAAATAAGATAC
ACAGATCTGTAAATTCTCTTTGTGGCTTTTCTTTTTTGTTTTTAACGGCT
TTAGACACTTATAAAACAAGATACTCTATATGTATATAGATTTTATTGGG
GAAATTTGGCAGATTGCGTATTTGCGACCTTTGGTTTATAAACTCCAGTG
AACCGAAACTTAATTAGTCGTTAAGATAGCAAGGGTTAAAAAACACGGAA
CATAGAATTTACATAGAACAGACAGAGAGACAGAATAACAGTATTTAAAC
AAGATAACAGTATTTGAACATAACAAAAAAAAACAGACCAGACCAGACCA
GACGATATACGACCGTTCTCCGAAAATGGAGAAACTAAATCACAAACGAG
AAGACAAGACAAGGAACTGGAACAAACCTACGTACAAGAAAAGAAAAACT
TTACTCAACAAAGACATCGACAACCAAAATGATATCTGATTATCGATAAA
CAATGCCAAAATCTTATCCATTATAGCAAGAACAACAAGCCAGAATGTTA
CCAGATTGGCCAAAGATTGGTGACAGAATCACGCAGCCTTTTCTTGATCA
ACTGATGGTCAGTCAACTGTTGGAACAGAATCTGACACTCGGATTCTTCT
TGAAAGGGCTAAATGGACCACCAGGTCCTCCTGGTCCACCTGGTTCCCCT
GGAGAACCTGGTCCTCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACA
CGTTGGTGAAGATGGTGCTCCTGGTCCAATGGGTCCTCCTGGACCATTGG
GTTCTGCTGGTGTCCCCGGTTTCCCTGGAGAGAAAGGAGATCCAGGTGCA
ACTGGTTTGCCTGGATCTGCAGGTCTTCCGGGTGCTCCTGGTTTACCTGG
TCCTGAAGGATTGGTTGCAGAAACCCGTGATAATGTTGCAGTACAACTGA
AACCAGAGGTGAATACTTTGTAGATTCTTACCCTAATTTAAAAGAATTTC
ATTTTGAAGTCATTAATCAGATTTATCTTGCATTTTTATCTGGCATCTTT
TAGATTTTGATTTCATACAATTATTTTGATAAACTTATACGCCAAAGTTC
TAGTTTTGACTTGATTGAGGGCAAAATTGATGATAACTCTTGGATTCATT
ATACATGAAGAATGATGGAAGTATATTTTGATGTATCTTTTTCTTTTCCA
GAACTTCACAGAGAAATGCGAAGGTGAACGCTTGCTTATTGATTGCAAAA
CATATAACCATATCCAAGTCAAAGATGTATACTGGGGTCGAGATGATACT
TCCACCTGTCAAAATGCACCAAACGGTTTAGTAGCTGATAAATTTTGTGA
TGGAAATCGTGAAAATGCCAAACAAAAAGTTGCGGGACAATGTAAAGGCG
AACAGGCTTGTGAAGTTGTCGCCTCCAATATTTTCTTTGATGATAACAGT
TGTGGAAATATATTCAAAGTGTTGAAAATTTGGTATGAATGTGTACCCGA
CTCCAGTCCGGGCACGGAAGATACGTACGGATCACGGCGTAAACGGAAGC
GTGCAACCAAGGATAAAAGATCTTTTCGAGATAGTTAGATTAAAATCAAT
GACCCAGAAATTCTAATACAAAAAAACCATCTAGTCAGTAAAATGAAAAA
GTTTCATGTGCAGAGAATGTATTATAGACAATTAACTAAATAATCTGCGG
ATGAGATTTTGATCAAATTATTGACTTGCTGACAACGTTGGTGTTTCTCA
GTTATTGCCAGAGAAGAGCAGAAAGGTGACGACATTGCTGAGAGAGTAAG
ACAAGAAAGAAAGACGAGCTCCCACGAATTTTTTATAACAATAAAGCTTT
TTCACATAAGACCTGTATATATAATATTTTAGTTTAACAATTTATGAAAT
GATTCCAACCTTAGGTGTATGGTGTTCTTAACAGATAATTCTAGAGGGCA
GAGTGTCTTGTTTTATAAGGTCAACTTCCTAAATGCAAAGTTGATTGAAA
CCAATTTTTGTAATATCAAATTAACAGTTAAGCCATAAACATCTTCTTTA
TTTTCAAGAATTTTAGAGTTTTTTAAGGTCATGGTAGAATGTCAAGACCA
CCATCGATCGCATCAAATAAAAGGGCGTAACCACCCTCCACCCTCCTCTC
AATCATCAACACTCAATCACATCCACCATTCATACACCACAATCATTTAT
TCACTCAAAATCATAAGTCTTTTAGATAATCCACTCACACATTAAATCAT
AGTCATTTTATCTAGTTGTTAGAGAATTTTAGACCATTATATTTTTTTGT
GTTCCTATTTTTTTTTGTTTTCAAGACCTCATATATTTGTAATTTCAAAT
TTGACATAAAACTAAATTATCAATGACAAACAATGAAAATATCTTTCCAA
CTAATTTATTTTTGAGGAATTAACAACTTTAACAAGGACTTAGAATGCTT
CTCCTGTATTATTTCTAACTATATTTCTATTGTAGTAGTGGATAAATAAA
TGTATAAACTGAATTCAATCAAGAATCGAACGAAATTAATTATTTTCTCC
TTTTCTTTACTTTTCAAAAACAACAGTCAACACAGATGCAAATGGGAGGA
GATATGAATAGAATACTTCCAGATTGGCCAAAGATTGGTGACAGAATCAC
ACAACCCTTTCTCGATCAATTGATGGTCAGTCAACTGTTGGAACAGAATC
TGACTCTCGGATTCTTCTTAAAAGGACTTAACGGACCACCAGGTCCTCCA
GGACCACCAGGACCATCTGGAGAACCAGGAGCCCCAGGTTTACCCGGTGC
ACCAGGAGCCCCTGGACACGTTGGTGAAGATGGTGCCCCTGGTCCAATGG
GACCACCAGGCTTATCTGGAGGCCCTGGTATGCCCGGATACCCAGGAGAG
AAAGGAGATCCAGGACCATCAGGTTTACCTGGATCCGCCGGTCTGCCTGG
TGCCCCTGGTCTACCTGGACCACAGGGATCAGCTGGAGATTCAGGACCTG
AACCAATCAAACCGGTGAGTAAGAAAAAAACGTTCTTTGTCAACATTCTT
CGATGAAAACTTTTACCGCCTTTAAACAGGATGTCGACCAGGATTGTATT
TTGGCTATGGAGATATTAGATTTAAGGTTAAAACNACCTGAACCAATCAA
ACCGGTGAGTAAGAAAAAAACGTTCTTTGTCAACATTCTTCGATGAAAAC
TTTTACCGCCTTTAAACAGGATGTCGACCAGGATTGTATTTTGGCTATGG
AGATTTTACAATCTTGCACTAATCGATCTAGCATTTCAGACATTTCGTTT
TCTATTTTTAACTAAAGAAACAATTAGACATACTGTAACCAAAATTCTAG
CATTTTCTTTTCAAACAACTTTTCAGGAGTTCACTGTTGCATGCGAAGGA
CAAAAACTTTGGATTCAGTGTCAACAATACGAATTGATCAAGATCAAAGA
AGCATACTGGGGTCGTGAGGACCACGTTACCTGTTCTGATACACCGGCCG
GTCTGAGCCGTGAAGTCTGTGACGCCAACAGTGATAATGCCTTCACAAAG
GTAGATGCACAATGCAAAGGTCAACAAAATTGTGAAGTTGTCGCCTCCAA
TATTTTCTTTGACGATAACAGTTGTGGAAACGTTTATAAATATTTGAAAG
TGAAATACGAATGCGAGGCTGACCAGCAGAACAGCATGGACGTCTTGAAA
GAAGGCGGTCGCCGACGACGAAAGAAGAAGCGTGACACCAAAGAGAAGCG
ATCCTTCAGGGATTCATAAATAGAACTCTCTCACTTTCTCCTACAAAATG
TCCATGCGCGCAAAACTTTCTATTTTTTTGACGAAAACAAAACTTCTGAA
GACTTTTTTTACAGGACTTAATAGAACCAACTTTATGGTGTATCATCGAA
ACCATGGATCAGCAAAATTTATTTTTTGCTCAAAGCAGTATAAATATTAT
CGACGGTAGAGAAGTGTGGTGTAATATTTAGATTAGGCCATATTACTTGC
TATGTCTCCAAGTTATAGAGTTTAAAAACTAAACAATATATTTTTCTATG
AATTTTATATTCTATTTTGTTATGAAAATACTGGGAACTATTCTATATGC
ATAAGCAAACGTTGCAATTCTTTATCATCTTCCTCGGCCAAAATTTACAG
TAAATCAAGCATCTTCCTATTTGCGGGAGAAAGCAATAAATACTAGTACA
GTAGCTTAAAGGATACTGTAGATTGTCCTACATCTTAGTTATACCCTTCT
TGTTTGGCTAAAGTCGCAAAATTTCATCAACAAAAACAGAAATCGGAATT
TCAGGATTTCATAGTCGCTGTTTATTGCGATGAGATGGTGGTCAGAGGAT
AAGGAAATTTTAGACTGGGCAATTTAAAGTATCGTTTTTCAATTGTACAT
ATCTTCAAAACTGAAACCCAAAACAATAAATTTGACAAACACAAGTTTCT
TTACAGATATGATAGTTTACAAATTTTTATAGCAAAATTTGATATAATAT
TTTTTTACATATTTTTTTGAAAAATGTGACTTTGAGTGCCCTCGTTATCC
CTTATGAGTTCAGAATGGACGGACTAAAAACCATACGGGGTACACACCCA
AAGAATATGCATTTATAAAGTAAAAATTTGATATTTTTATAACTGATAAA
TTATTATTCCATATTTACAAAAAAAATATACTCTTGTATTTTATGAAGTT
ATATTTTTTTAAATTTTTTTGGAATTTTGTGTTTTTGTTGTAAAATTTTG
TGCAGTGACATCCCTTACTATATAGATTTATATAAAAAAGAGTGTAGAAA
TTAATTTGGTAAAATTTGAAATTAATCCCGTCTACTCCTTTTGGAATTGA
CAAAAAATCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062229-exon-scaffold_362-1575043694:234259..234495 | TCONS_00062229-exon-scaffold_362-1575043694:234259..234495 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1575043694:233768..233834 | TCONS_00062229-exon-scaffold_362-1575043694:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1575043694:230282..230719 | TCONS_00062229-exon-scaffold_362-1575043694:230282..230719 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1575043694:228433..229919 | TCONS_00062229-exon-scaffold_362-1575043694:228433..229919 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1510915933:234259..234495 | TCONS_00062229-exon-scaffold_362-1510915933:234259..234495 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1510915933:233768..233834 | TCONS_00062229-exon-scaffold_362-1510915933:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1510915933:230282..230719 | TCONS_00062229-exon-scaffold_362-1510915933:230282..230719 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1510915933:228433..229919 | TCONS_00062229-exon-scaffold_362-1510915933:228433..229919 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1491911889:234259..234495 | TCONS_00062229-exon-scaffold_362-1491911889:234259..234495 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1491911889:233768..233834 | TCONS_00062229-exon-scaffold_362-1491911889:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1491911889:230282..230719 | TCONS_00062229-exon-scaffold_362-1491911889:230282..230719 | Clytia hemisphaerica | exon |
| TCONS_00062229-exon-scaffold_362-1491911889:228433..229919 | TCONS_00062229-exon-scaffold_362-1491911889:228433..229919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:228433..234495 - |
Blast
The following BLAST results are available for this feature:
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