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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062235 ID=TCONS_00062235|Name=TCONS_00062235|organism=Clytia hemisphaerica|type=transcript|length=1808bp
cttttttccaaaacaagCGTGCGGTTTCGAATGTCAGGGAAAACCGGCTT
TTTCGGCAAATGGAAATTTAGCGAAACtttcatttattttaaattgaGAT
TTATTTTAACTTGGTAAATTATACTGTAAAAGAATGCATTGGTCTCAAGG
CCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTCGGCGTTCAAGAAACTC
AAGAACAACAAGCCAGAATGTTACCAGATTGGCCAAAGATTGGTGACAGA
ATCACGCAGCCTTTTCTTGATCAACTGATGGTCAGTCAACTGTTGGAACA
GAATCTGACACTCGGATTCTTCTTGAAAGGGCTAAATGGACCACCAGGTC
CTCCTGGTCCACCTGGTTCCCCTGGAGAACCTGGTCCTCCAGGTTTACCC
GGTGCACCAGGAGCCCCTGGACACGTTGGTGAAGATGGTGCTCCTGGTCC
AATGGGTCCTCCTGGACCATTGGGTTCTGCTGGTGTCCCCGGTTTCCCTG
GAGAGAAAGGAGATCCAGGTGCAACTGGTTTGCCTGGATCTGCAGGTCTT
CCGGGTGCTCCTGGTTTACCTGGTCCTGAAGGATTGGTTGCAGAAACCCG
TGATAATGTTGCAGTACAACTGAAACCAGAGaACTTCACAGAGAAATGCG
AAGGTGAACGCTTGCTTATTGATTGCAAAACATATAACCATATCCAAGTC
AAAGATGTATACTGGGGTCGAGATGATACTTCCACCTGTCAAAATGCACC
AAACGGTTTAGTAGCTGATAAATTTTGTGATGGAAATCGTGAAAATGCCA
AACAAAAAGTTGCGGGACAATGTAAAGGCGAACAGGCTTGTGAAGTTGTC
GCCtccaatattttctttgatGATAACAGTTGTGGAAATATATTCAAAGT
GTTGAAAATTTGGTATGAATGTGTACCCGACTCCAGTCCGGGCACGGAAG
ATACGTACGGATCACGGCGTAAACGGAAGCGTGCAACCAAGGATAAAAGA
TCTTTTCGAGATAGTTAGATTAAAATCAATGACCCAGAAATTCTAATACA
AAAAAACCATCTAGTCagtaaaatgaaaaagtttcatGTGCAGAGAATGT
ATTATAGACAATTAACTAAATAATCTGCGGATGAgattttgatcaaatta
ttGACTTGCTGACAACGTTGGTGTTTCTCAGTTATTGCCAGAGAAGAGCA
GAAAGGTGACGACATTGCTGAGAGAGTAAGACAAGAAAGAAAGACGAGCT
CCCACGAATTTTTTATAACAATAAAGCTTTTTCACATAAGACCtgtatat
ataatattttagtTTAACAATTTATGAAATGATTCCAACCTTAGGTGTAT
GGTGTTCTTAACAGATAATTCTAGAGGGCAGAGTGTCTTGTTTTATAAGG
TCAACTTCCTAAATGCAAAGTTGATTGAAACCAATTTTTGTAATATCAAA
TTAACAGTTAAGCCATAAacatcttctttattttcaagaattttagaGTT
TTTTAAGGTCATGGTAGAATGTCAAGACCACCATCGATCGCATCAAATAA
AAGGGCGTAACCACCCTCCACCCTCCTCTCAATCATCAACACTCAATCAC
ATCCACCATTCATACACCACAATCATTTATTCACTCAAAATCATAAGTCT
TTTAGATAATCCACTCACACATTAAATCATAGTCATTTTATCTAGTTGTT
AGAGAATTTTAGAccattatatttttttgtgttcctatttttttttgttt
tcaagaccTCATATATttgtaatttcaaatttgacATAAAACTAAATTAT
CAAtgaca Run BLAST on NCBI transcript from alignment at scaffold_362:230918..235132- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062235 ID=TCONS_00062235|Name=TCONS_00062235|organism=Clytia hemisphaerica|type=transcript|length=4215bp|location=Sequence derived from alignment at scaffold_362:230918..235132- (Clytia hemisphaerica)
CTTTTTTCCAAAACAAGCGTGCGGTTTCGAATGTCAGGGAAAACCGGCTT
TTTCGGCAAATGGAAATTTAGCGAAACTTTCATTTATTTTAAATTGAGAT
TTATTTTAACTTGGTAAATTATACTGTAAAAGGTTAGTAATTTTTGTTTT
TTTTGTATTTTCAAGGTTTTTGTGTCTTTTTGAAACCTTTTTGAAATCGA
ATGTTTTGAAATAATAAGATTGTTCGAATTATGCTCAAAGTGTGTATTGG
TTAAGCATAATTGTTTATAGAACAGTAGCTTCCGATTGGCTGAAAAATGC
GCAACGAATCAAACAGAAAATTGTATCAGTGAAGGATTTCAAAAAAAGAA
AAGATTGGTTCGCTTAAAAAAAATAACTTGGTGAATAATTTTGATGAGTT
TTTAAGATTGTCAACTATAAAAATAATCTATCGAACTTCGAGGTGAGCTT
TGTTTTGAAGTTTGTTTTGAAATTTTTTTATTGTCGTTAATAAACAATAG
CAATCAAAACAAAGGAAGACAAAATAGAGCTGAATTATTCCAATTCATTA
ACGGGATGATCTAATCAATAGAGCCACCTGCTTTCAATAGAATTCTATTG
TTAAATCATTCGAATTTTTCTCAATCGAATTCTGTCAGTGGTGAAAATGA
AAACAAGCTATTAGCGTTTACTGTTGAATTCATGCTATGCTTCCATTATT
GAAGAAAAAAACTTTAATTTTTTGAATGCATGCGAAGGAGGCATAGACAG
ACATAGCCCAAAATAATTAACATCGCTAATTAATTTTTTGGGGCTTTTGG
TTTTGTCTCTTTTGACATAACTTGTTTTAATATCTTCTTGTGTATATATT
GTATAGAAAATTAAAATTTATAAAGTAAGTTGGCATTTATTTTAACTTTG
ATGGTTGTATTGATGGATTTTTTTTTGGGATATTATTTTTCTCATTTGAT
CGGATTCGATTGCCAATGTTTTTGTTACTTTCGATGATTTGGTTTCCCAG
CTCATAGTTAAAAGATTATTATAAATTTATTACCTGTCCTGCTTTAATCA
TTTTGGCTTCTGGTAGAATTGTTTTTATCATTGGGTCAAACTCCCGTCAA
ACTTTAATAAAATTTATATTGAATACAAACTTCAACTTCAACCTCTTCTA
GCCTAAATATTCCTTGAAATACATAACAATCAAGATATTTCACCCCCTGT
AAAATTATATTTTCTCAATGCCATGGCTTTTTTATGATGAAGGATTCAGG
TTCTATAATTTTGCATAAAAATAACATTGTTTTTTTCTCGTACCTTAGAA
TGCATTGGTCTCAAGGCCTTGTGTGCCTGCTATTTGCCGTCTTGAGTTTC
GGCGTTCAAGAAACTGTAAGTAAATTCATTCTTAAAAATTGTTTCTTTTA
AAAACTTTTCTTCGTCTTTATTTTCGATATCCTAGGTAGATACAAAACTC
AATATTTTCCATTTCCAAAAACCATTTTTATCTTCAAGAAGCAATCTTTT
TCTTTTTGAAAACTTATCTTTTATCTCCAGAAAGGGTCTTTCATTTTTGT
ATCTACTTAAGAAAACCACGGTTAAGACACGCTAATTTGATACTCATTGA
ATTACTAAAGTCCTAAAGTGAAATTAGTCTATGGTATTGTACCGAATTCT
TTTGGACCCAGACCTTTTTTCCATGAGATTAAGGTTGACAAGACTAGGGT
GTGTAAATTAACTTTTTTACATTTACAACATAACAAACACATACCTTTTA
CTCATAACATAACATAACATCACTTGACAATATCTTTACACATCTACCAT
CACATTACATTCACTGACCACCATTGAGATTTGACCATGACACCAACATT
GAGGTATTTACAAAACAGCACCTGAAAAATAAGATACACAGATCTGTAAA
TTCTCTTTGTGGCTTTTCTTTTTTGTTTTTAACGGCTTTAGACACTTATA
AAACAAGATACTCTATATGTATATAGATTTTATTGGGGAAATTTGGCAGA
TTGCGTATTTGCGACCTTTGGTTTATAAACTCCAGTGAACCGAAACTTAA
TTAGTCGTTAAGATAGCAAGGGTTAAAAAACACGGAACATAGAATTTACA
TAGAACAGACAGAGAGACAGAATAACAGTATTTAAACAAGATAACAGTAT
TTGAACATAACAAAAAAAAACAGACCAGACCAGACCAGACGATATACGAC
CGTTCTCCGAAAATGGAGAAACTAAATCACAAACGAGAAGACAAGACAAG
GAACTGGAACAAACCTACGTACAAGAAAAGAAAAACTTTACTCAACAAAG
ACATCGACAACCAAAATGATATCTGATTATCGATAAACAATGCCAAAATC
TTATCCATTATAGCAAGAACAACAAGCCAGAATGTTACCAGATTGGCCAA
AGATTGGTGACAGAATCACGCAGCCTTTTCTTGATCAACTGATGGTCAGT
CAACTGTTGGAACAGAATCTGACACTCGGATTCTTCTTGAAAGGGCTAAA
TGGACCACCAGGTCCTCCTGGTCCACCTGGTTCCCCTGGAGAACCTGGTC
CTCCAGGTTTACCCGGTGCACCAGGAGCCCCTGGACACGTTGGTGAAGAT
GGTGCTCCTGGTCCAATGGGTCCTCCTGGACCATTGGGTTCTGCTGGTGT
CCCCGGTTTCCCTGGAGAGAAAGGAGATCCAGGTGCAACTGGTTTGCCTG
GATCTGCAGGTCTTCCGGGTGCTCCTGGTTTACCTGGTCCTGAAGGATTG
GTTGCAGAAACCCGTGATAATGTTGCAGTACAACTGAAACCAGAGGTGAA
TACTTTGTAGATTCTTACCCTAATTTAAAAGAATTTCATTTTGAAGTCAT
TAATCAGATTTATCTTGCATTTTTATCTGGCATCTTTTAGATTTTGATTT
CATACAATTATTTTGATAAACTTATACGCCAAAGTTCTAGTTTTGACTTG
ATTGAGGGCAAAATTGATGATAACTCTTGGATTCATTATACATGAAGAAT
GATGGAAGTATATTTTGATGTATCTTTTTCTTTTCCAGAACTTCACAGAG
AAATGCGAAGGTGAACGCTTGCTTATTGATTGCAAAACATATAACCATAT
CCAAGTCAAAGATGTATACTGGGGTCGAGATGATACTTCCACCTGTCAAA
ATGCACCAAACGGTTTAGTAGCTGATAAATTTTGTGATGGAAATCGTGAA
AATGCCAAACAAAAAGTTGCGGGACAATGTAAAGGCGAACAGGCTTGTGA
AGTTGTCGCCTCCAATATTTTCTTTGATGATAACAGTTGTGGAAATATAT
TCAAAGTGTTGAAAATTTGGTATGAATGTGTACCCGACTCCAGTCCGGGC
ACGGAAGATACGTACGGATCACGGCGTAAACGGAAGCGTGCAACCAAGGA
TAAAAGATCTTTTCGAGATAGTTAGATTAAAATCAATGACCCAGAAATTC
TAATACAAAAAAACCATCTAGTCAGTAAAATGAAAAAGTTTCATGTGCAG
AGAATGTATTATAGACAATTAACTAAATAATCTGCGGATGAGATTTTGAT
CAAATTATTGACTTGCTGACAACGTTGGTGTTTCTCAGTTATTGCCAGAG
AAGAGCAGAAAGGTGACGACATTGCTGAGAGAGTAAGACAAGAAAGAAAG
ACGAGCTCCCACGAATTTTTTATAACAATAAAGCTTTTTCACATAAGACC
TGTATATATAATATTTTAGTTTAACAATTTATGAAATGATTCCAACCTTA
GGTGTATGGTGTTCTTAACAGATAATTCTAGAGGGCAGAGTGTCTTGTTT
TATAAGGTCAACTTCCTAAATGCAAAGTTGATTGAAACCAATTTTTGTAA
TATCAAATTAACAGTTAAGCCATAAACATCTTCTTTATTTTCAAGAATTT
TAGAGTTTTTTAAGGTCATGGTAGAATGTCAAGACCACCATCGATCGCAT
CAAATAAAAGGGCGTAACCACCCTCCACCCTCCTCTCAATCATCAACACT
CAATCACATCCACCATTCATACACCACAATCATTTATTCACTCAAAATCA
TAAGTCTTTTAGATAATCCACTCACACATTAAATCATAGTCATTTTATCT
AGTTGTTAGAGAATTTTAGACCATTATATTTTTTTGTGTTCCTATTTTTT
TTTGTTTTCAAGACCTCATATATTTGTAATTTCAAATTTGACATAAAACT
AAATTATCAATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062235-exon-scaffold_362-1575043694:235001..235132 | TCONS_00062235-exon-scaffold_362-1575043694:235001..235132 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1575043694:233768..233834 | TCONS_00062235-exon-scaffold_362-1575043694:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1575043694:232338..232769 | TCONS_00062235-exon-scaffold_362-1575043694:232338..232769 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1575043694:230918..232094 | TCONS_00062235-exon-scaffold_362-1575043694:230918..232094 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1510915933:235001..235132 | TCONS_00062235-exon-scaffold_362-1510915933:235001..235132 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1510915933:233768..233834 | TCONS_00062235-exon-scaffold_362-1510915933:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1510915933:232338..232769 | TCONS_00062235-exon-scaffold_362-1510915933:232338..232769 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1510915933:230918..232094 | TCONS_00062235-exon-scaffold_362-1510915933:230918..232094 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1491911889:235001..235132 | TCONS_00062235-exon-scaffold_362-1491911889:235001..235132 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1491911889:233768..233834 | TCONS_00062235-exon-scaffold_362-1491911889:233768..233834 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1491911889:232338..232769 | TCONS_00062235-exon-scaffold_362-1491911889:232338..232769 | Clytia hemisphaerica | exon |
| TCONS_00062235-exon-scaffold_362-1491911889:230918..232094 | TCONS_00062235-exon-scaffold_362-1491911889:230918..232094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:230918..235132 - |
Blast
The following BLAST results are available for this feature:
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