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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062181 ID=TCONS_00062181|Name=TCONS_00062181|organism=Clytia hemisphaerica|type=transcript|length=3829bpRun BLAST on NCBI protein sequence of TCONS_00062181-protein >TCONS_00062181-protein ID=TCONS_00062181-protein|Name=TCONS_00062181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp TLGFMKMLILQIFAEFCQCNNKMAKGKHEGENPAPRKTIFVRNLPFTTTNRun BLAST on NCBI transcript from alignment at scaffold_362:368097..383485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062181 ID=TCONS_00062181|Name=TCONS_00062181|organism=Clytia hemisphaerica|type=transcript|length=15389bp|location=Sequence derived from alignment at scaffold_362:368097..383485+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:368097..383485+ >TCONS_00062181 ID=TCONS_00062181|Name=TCONS_00062181|organism=Clytia hemisphaerica|type=CDS|length=13860bp|location=Sequence derived from alignment at scaffold_362:368097..383485+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062181 vs. Swiss-Prot (Human)
Match: RBM28 (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 2.201e-43 Identity = 75/187 (40.11%), Postives = 110/187 (58.82%), Query Frame = 1
Query: 1933 KQETDKRNLYLAYEGVITRKTPGAEDLPEAYMXXXXXXXXXXXXXXXNPQYFISRTRLCVRNIPLNLSSDEL-KTELKKFSELKEMKIFDAKIMRSKDRKDGQGAFRSMGYGFLDIDTHENALKLLRAVNNNPDIFGENRRPIVEFSVENTKALKILDLKKQK-LEQMKAEKENNETDGMSEEQKKD 2487
K+ T RNLYLA EG+I T AE + A M RE+ K +KL + F+SRTRLC+ N+P + +L K L S K ++I + ++MR G +S+GY F + HE+ALK LR +NNNP+IFG +RPIVEFS+E+ + LK+ +L+ Q+ L++M+++ E E KD
Sbjct: 432 KKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKD 618 HSP 2 Score: 78.5666 bits (192), Expect = 2.201e-43 Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 2
Query: 1562 DAKEGKTVFIRNMSYNTDDEGLMEEFEKFGEIDYCKIVMDRETGHSKGCAFLKFKEKDAADECIKEMEKLQDQQKNLVVDGRSIVVSKAVTKGKMGELE 1858
D EGKTVFIRN+S+++++E L E ++FGE+ Y +IV+ +T HSKGCAF +F ++AA +C+ +++ L +DGR + V AVT+ + +L+
Sbjct: 330 DVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASP-ENEAGGLKLDGRQLKVDLAVTRDEAAKLQ 427 HSP 3 Score: 96.2857 bits (238), Expect = 4.907e-20 Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 2
Query: 908 RLIVRNLSFKVELDELKECFSKFGKVLDVNIPTKTVNNKEVKIGCGFVQFENPSQGLAALEAMNMKEINGRAVIVDWAVKKDAYEKDKDSKAIND 1192
RLI+RNLSFK D+LK F++FG VL+VNIP K G GFVQF+N + AL+ MNMKEI GR V VDWAV KD Y+ + AI +
Sbjct: 115 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMR---GFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGE 206 The following BLAST results are available for this feature:
BLAST of TCONS_00062181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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