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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062265 ID=TCONS_00062265|Name=TCONS_00062265|organism=Clytia hemisphaerica|type=transcript|length=1952bp
ATCGATAAAACAATAAAACCAAAagaaatactaacaaaaaatatcaaaaa
aagtaaaaatataaaGATAAAGTTTTCTGTTGTTCAAAAGAGGTCAAAAT
ATGTACATGTGTCAAGTTCAAGAAAGGTTCTAATACTAGGCATCAATTTG
TATCTCCAAGAAGTCTTGAAGAGGAAATATCTCCGCCAtgttcttttttc
tcaatttctgcAGCTCTGGGTTGTTCACCAATGTATATGCTAAAAACCAT
CTGTTTCGAGCTCGTTTGTTATTCTGATAAGGGTCGATGATTTGAAGCAA
TCGGTCAGAAACTTGTATCTTCGGTCTCCCTAAACAGTCACGCGTTTGCT
CCTGTGTTGTGAGATTTGACGCATGCGCGGTACGTGGTTCCAAAAGCATT
TGACAGAAACATCTCATGACTGgacttttgaaaacattttctacTCGTAA
GAAAGATGCATAGGTTTTGGATAAATCGAAACTCCTAAAAAATACCAACG
GGTTGCGATCGATGCGGCCGTAAAAGAATAAAAAGCTGACCACCAATAAC
AGCAAACGTTTAGCTAGCGATTTGATACTTGTTAAAATGTTAGCAAATAG
TAGGAAAAACTTGAGTACAAAAAACAGGCTTGgatatttcaaattgatgt
gCGTTTTCGAGTGTTCTAAATCAGTTAAAGCATAACGTATGATTAACCTT
TGTGTCAAAATGAAGACAAATCCAGCACCAAAAATCGATAAACAGATCCG
GAATAGCATCAGCACCTGACTGCCTTCCAAATGTGCTAACCCGTAAATGG
TTATAGTTACTATAGCAACGAACACATAACAAAAGCCAAATCCAACAACC
ATAAAACTGATTAAATAAGCCGGGAACACCATATGATGATATAAAGCAGC
ATTGTAATTCTTGTCAGTTTTCTTGTAAAGTTTCTGTGTCCCGTTATAAA
TGGAGAATGAATCTCCTTGGACACAATACAAAAAGTGAACTCCCATAACA
ATGTAGGCAATGATGGATAAAATTAGTGTGCCATACCAGAGAGCCTTGAG
AGAGATATCGTCTGTGGATTTTAGTAAGAAATGGTACATGCGGACTTGAC
CAAAAGCAATGAAGAAGTATAATAATACACCAATCACAACCATGCATTGC
CAGATCTCACTAGGGAATTTATACCAAGGTTTAAAAGctgtttttagttt
ttgaacAATGGTTTGTTTCGGCTTTGGATATCTGTTTTTGATCAGTTTTT
GAAGATGTAAGATTTGGTGTTTAGCTACGACGCTATTTTCAACGCTTGGT
AACTCGTAACATCTAGTTTTAAGACATGCGTTTAATCTGCTTGCAAACCC
AAAGTAAATgaaactcaaaaacacaaaagCTGGGGTGAAAATAATCGCAG
TGCTGTTCACAACTTGATCGTCCTCCTGAACTAAATCACTCTTgcaatta
aaatgaaattgcaaTCCTGTCTTGACGATTTCCCAAACAGTGTAAAAGAT
ACCAAGAATCGACGCGACTAATAAATGTTTTGATGAGATGAGTGCGAATA
GTGGGTATGATGTGAAAGCAACCAGTGTTGACATGAGGATTTGCATGAAA
AAGGAACAAAGATAACTCTCAGGTCCCTTAATACTAGAGCACGTGTTTTT
GGCGGATGGATCTTTGTGAATAATGATTTCCAAAATGTTTTGCGATAAAA
ACCCATAAGTTACGGTTGTTAAGAGGCGGTTACGATCGTTGTCTTGGAGA
AACATAAACGGTGGCTGTATTGTGAACTTAGAGTTTTTCCATGCTGAATG
GAGATTTAAGATTGCGAGCACCAGTGCAGGAAGTAAATACCAGAGTACTg
ttaaaaatgttgttttttcgaTTGCACGATCACAAGCCATGGCGAAAGTC
TGCGAAATCACTTCTTCACTCTGCTCAACTTTGCAAAGACACAACTTGTT
TC Run BLAST on NCBI transcript from alignment at scaffold_362:581640..584169- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062265 ID=TCONS_00062265|Name=TCONS_00062265|organism=Clytia hemisphaerica|type=transcript|length=2530bp|location=Sequence derived from alignment at scaffold_362:581640..584169- (Clytia hemisphaerica)
ATCGATAAAACAATAAAACCAAAAGAAATACTAACAAAAAATATCAAAAA
AAGTAAAAATATAAAGATAAAGTTTTCTGTTGTTCAAAAGAGGTCAAAAT
ATGTACATGTGTCAAGTTCAAGAAAGGTTCTAATACTAGGCATCAATTTG
TATCTCCAAGAAGTCTTGAAGAGGAAATATCTCCGCCATGTTCTTTTTTC
TCAATTTCTGCAGCTCTGGGTTGTTCACCAATGTATATGCTAAAAACCAT
CTGTTTCGAGCTCGTTTGTTATTCTGATAAGGGTCGATGATTTGAAGCAA
TCGGTCAGAAACTTGTATCTTCGGTCTCCCTAAACAGTCACGCGTTTGCT
CCTGTGTTGTGAGATTTGACGCATGCGCGGTACGTGGTTCCAAAAGCATT
TGACAGAAACATCTCATGACTGGACTTTTGAAAACATTTTCTACTCGTAA
GAAAGATGCATAGGTTTTGGATAAATCGAAACTCCTGAAAAATACCAACG
GGTTGCGATCAATGCGGCCGTAGNTACCTATAATTTGAAATTACTCTACC
ATAGAATCGTTTAAACGAAAAGTACGATAGGGATCGATAAAACAATAAAG
CCAAAAGAAATACTAACAAAAAATACCAAGAAAAGTAAAAATATAAAGAT
AAAGTTTTCTACTGTTCAAAAGAGGTCAAAATATGTACATGTGTCAAGTT
CGAGAAAGGTTCTTATACTAGGCATCAATTTCTATCTCCAAGAAGTCTTG
AAGAGGAAATATCTCCGCCATGTTCTTTTTTCTCAATTTCTGCAGCCCTG
GGTTGTTCACCAATGTATATGCTAAAAACCATCTGTTTCGAGCTCGTTTG
TTATTCTGATAAGGGTCAATGATTTGAAGCAATCGGTCAGAAACTTGTAT
TTTCGGTCTCCCCAAAGAGTCACGTGTTTGTTCCTGTGTTATGAGATTTG
ACGCATGCGCGGTGCGAGGTTCCAAAAGCATTTGACAGAAACATCTCATG
ACTGGATTTTTGAAAACATTTTCTACTCGTAAGATGCGTAGGTTTTGGAT
AAATCGAAACTCCTAAAAAATACCAACGGGTTGCGATCGATGCGGCCGTA
AAAGAATAAAAAGCTGACCACCAATAACAGCAAACGTTTAGCTAGCGATT
TGATACTTGTTAAAATGTTAGCAAATAGTAGGAAAAACTTGAGTACAAAA
AACAGGCTTGGATATTTCAAATTGATGTGCGTTTTCGAGTGTTCTAAATC
AGTTAAAGCATAACGTATGATTAACCTTTGTGTCAAAATGAAGACAAATC
CAGCACCAAAAATCGATAAACAGATCCGGAATAGCATCAGCACCTGACTG
CCTTCCAAATGTGCTAACCCGTAAATGGTTATAGTTACTATAGCAACGAA
CACATAACAAAAGCCAAATCCAACAACCATAAAACTGATTAAATAAGCCG
GGAACACCATATGATGATATAAAGCAGCATTGTAATTCTTGTCAGTTTTC
TTGTAAAGTTTCTGTGTCCCGTTATAAATGGAGAATGAATCTCCTTGGAC
ACAATACAAAAAGTGAACTCCCATAACAATGTAGGCAATGATGGATAAAA
TTAGTGTGCCATACCAGAGAGCCTTGAGAGAGATATCGTCTGTGGATTTT
AGTAAGAAATGGTACATGCGGACTTGACCAAAAGCAATGAAGAAGTATAA
TAATACACCAATCACAACCATGCATTGCCAGATCTCACTAGGGAATTTAT
ACCAAGGTTTAAAAGCTGTTTTTAGTTTTTGAACAATGGTTTGTTTCGGC
TTTGGATATCTGTTTTTGATCAGTTTTTGAAGATGTAAGATTTGGTGTTT
AGCTACGACGCTATTTTCAACGCTTGGTAACTCGTAACATCTAGTTTTAA
GACATGCGTTTAATCTGCTTGCAAACCCAAAGTAAATGAAACTCAAAAAC
ACAAAAGCTGGGGTGAAAATAATCGCAGTGCTGTTCACAACTTGATCGTC
CTCCTGAACTAAATCACTCTTGCAATTAAAATGAAATTGCAATCCTGTCT
TGACGATTTCCCAAACAGTGTAAAAGATACCAAGAATCGACGCGACTAAT
AAATGTTTTGATGAGATGAGTGCGAATAGTGGGTATGATGTGAAAGCAAC
CAGTGTTGACATGAGGATTTGCATGAAAAAGGAACAAAGATAACTCTCAG
GTCCCTTAATACTAGAGCACGTGTTTTTGGCGGATGGATCTTTGTGAATA
ATGATTTCCAAAATGTTTTGCGATAAAAACCCATAAGTTACGGTTGTTAA
GAGGCGGTTACGATCGTTGTCTTGGAGAAACATAAACGGTGGCTGTATTG
TGAACTTAGAGTTTTTCCATGCTGAATGGAGATTTAAGATTGCGAGCACC
AGTGCAGGAAGTAAATACCAGAGTACTGTTAAAAATGTTGTTTTTTCGAT
TGCACGATCACAAGCCATGGCGAAAGTCTGCGAAATCACTTCTTCACTCT
GCTCAACTTTGCAAAGACACAACTTGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062265-exon-scaffold_362-1575043694:583707..584169 | TCONS_00062265-exon-scaffold_362-1575043694:583707..584169 | Clytia hemisphaerica | exon |
| TCONS_00062265-exon-scaffold_362-1575043694:581640..583128 | TCONS_00062265-exon-scaffold_362-1575043694:581640..583128 | Clytia hemisphaerica | exon |
| TCONS_00062265-exon-scaffold_362-1510915933:583707..584169 | TCONS_00062265-exon-scaffold_362-1510915933:583707..584169 | Clytia hemisphaerica | exon |
| TCONS_00062265-exon-scaffold_362-1510915933:581640..583128 | TCONS_00062265-exon-scaffold_362-1510915933:581640..583128 | Clytia hemisphaerica | exon |
| TCONS_00062265-exon-scaffold_362-1491911889:583707..584169 | TCONS_00062265-exon-scaffold_362-1491911889:583707..584169 | Clytia hemisphaerica | exon |
| TCONS_00062265-exon-scaffold_362-1491911889:581640..583128 | TCONS_00062265-exon-scaffold_362-1491911889:581640..583128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:581640..584169 - |
Blast
The following BLAST results are available for this feature:
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