TCONS_00062340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062340
Unique NameTCONS_00062340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062340 ID=TCONS_00062340|Name=TCONS_00062340|organism=Clytia hemisphaerica|type=transcript|length=1623bp
CTGTTccgtttttttttcagacactgTATATTTATGCAATATCTTGTGAT
CAGgagaaaaaaatgcttttattggaaattttggtgTTCTCATCATTTCT
TATCCAATCAACGTGCAGCAATGAAATTTTGGGCATTCCAGAAAACAATC
ATGGACTAGAAGCAGTTACTTTTGTTGGAGAACAAGAAATAGCCTTGCCA
AGGCACTTCCGACTCGGAGTTATTCCAGTTTTATCTCCAGAATGGATTTT
CAGATTCTCAATCCGTTTTCATTCGTTGGATTATGTCGGGGATGGAACAT
TCGCTTATTGCACAGTTCTTCACCTCACTCAAGGGGGAAACAATGATGTG
TACGGGGATAGAACCCCAAGTATTACGATCGGAGgaaacCCAACATTGAA
CGAGATGAAAATAAGTGTGCCCGTCAATGGAAATAAATCATATCGACAGA
ACATTCCTTTCACCCTAGCAGTCAACGAAACTATGGATGTTGAGATTCAT
CAACGATACATAAGCAACGGTGAATATCGATATTTCATTCGCATCAATGA
AGAAGATATTCATTCTGTCGTCAATACCGaagcaaaacaattttataatg
tTAAAGTGTTTGCTGGTCAAGCCTTTTATGCTAAGCAAGCTGTTTGCCCA
GCTTCAATCAAGAATGTTAAACAttacaattttttgtaaataaaaagatT
CTTTGTTGTAAAATGTCTTCAGAAGTGGGTGGCCATCGACCAACAggcaa
acaacgttgtttcaacgtttatctcacgttcacaacatccatataacgtt
agacgaacgttaaaacaacgttgtgtgccagctgggcatgGTCAAACATA
TTAAAGAACCATTGCTTGAATAACACCGTtatggaatttggcaactgaac
ctaaaaatTCCAATTTTAAGAGCAATTTAAAGTGTAAATTGCCAATTTTC
CTCCAAGAATGCTTAACCCTAAttatactaggcttttagggaaggttcaa
aactaggggggcTGTTCTCAGAGtcaaaaatgcttattttatcctaaata
ttcaataaattacggtttaaacgatatatttgacatcaaaaataaatttg
tattggaaatgtgtcaatttttgtgacaccttactgatagaaatgtcatc
atgctcaaggtgtgaaaatttttaggtgtccaTTTTGAATATCcattaca
aaatgaaaaaacacttaTGTGAACacaaatgaagccacttatttcccatc
cagaacgcccccgcgtggtttttacacaaactctatattaaaagtaaaat
ctatcgctaaaatttaaaaaaatgcagtcctcaaaaacaaagcaactgct
agatacaatccgtcggcGTAATAAGAAATAAGTGGCATCATTTGTCCTTG
CCTGGGGAAGGTAAGAGATTCTACTCTAaatccttcgggctttaaactca
atgggttaAATAGTGCTTGTTTTGCTGctaaaatgataaaatctcattgg
ttgaaaaTACCGAAGAACTGCGATCGCAGACAGGTAAAACGCGTTAACAA
TACAATGGGATTTGCTTAAATAATCGGAAAATCTATCTATGATTTCATAA
TAAGGACATCGTTCTTGAAATCA
Run BLAST on NCBI

transcript from alignment at scaffold_363:163212..167963+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062340 ID=TCONS_00062340|Name=TCONS_00062340|organism=Clytia hemisphaerica|type=transcript|length=4752bp|location=Sequence derived from alignment at scaffold_363:163212..167963+ (Clytia hemisphaerica)
CTGTTccgtttttttttcagacactgTATATTTATGCAATATCTTGTGAT
CAGgagaaaaaaatgcttttattggaaattttggtgTTCTCATCATTTCT
TATCCAATCAACGTGCAGCAATGAAGTGAGTAaagtttttacaaaaagtg
cgtCCGTGAAAATTTAAACCAAACTTACCTTGCTAGATTGGTACTTAATT
TCTGCTACAATTCATTTCGCGTTTTCGTGAATTTTAATAAATCTAATATA
AATCTTAAATCCACGGGAAATTTTCAGCATAAAATAAGCTATAAGCTATT
TCCTATTTTTGGCTATATTTGGCGTGTTTCTTTCAAGTTACAActcattt
ttgcttgattttgtGAAATATCCCAAAACGctgattctcaaaaataaatc
aaaaattctaccgggtgcgccacaaaaaagtttctctctttaaaactaat
tttctagaaatctaaaaattttgaaagaaccattccaatttcattggaaa
gaaaaaaggtaaacttaaattttgatgggtcatttattaaatttgattca
ttagatcaaaagttatgctccattaaataaaaaagttactttcagaaagt
gctcaaaaacgttgaaaatcgacctatcaaattttcatttcaaaattggc
AATCACGATAGCCTTTAcacaattaaaaacatttttaagtaattttaaaa
cacataaatttcgaaactgaagggtcaaaagggtttaaaatcttaatcaa
aatcactttaatttacttttacccaaattttcctCACATTTTAGGTTTTA
GATTGGATAAAGTCTAGTAAGACTGGATGTACCGCGAAACCcatattttt
atgtatttttatgaattttactggatttttggcctttttcgacgaatttt
ctgccttttgttgaaattaaaccttcctttatacaacaaaagatcattta
gacagctaattatcatttttaatgactaaagcgaaaatactgatgtatca
agTAATTATGCTTccgtttaatttgataggtcgatttttaacctttttga
gcactttcagaaagtaacttttttattcaattgagcatgacttttgatct
aatgaatcaaatttaataaataaataacccatcaaaatttaagttgatct
ttcttctttctcatgaattaggaatggttcttttaaaatttccagatttt
gagaaaattagttttaaagagagaaacttttttgtagcGCACCCGGTAGC
AATTTCTTTAACTCCCCTAATCAAATCTCTTGGAAATTAATCCAATTACA
GTAATTCCTGTagatgcatttttgaaaaaagttttttgagccTCTGTTCA
ACCACCAAAGAATATACTTGTCTAGAACGAACTAAGCATCATTTCATGTT
TTAGATTTTGGGCATTCCAGAAAACAATCATGGACTAGAAGCAGTTACTT
TTGTTGGAGAACAAGGTAAGAAATACATACAAGAATAATATTTCAGTCTA
TATCGAGTTTAAGCATTTGCACTTTTAAGGACGGCGGAGTGACTTaagtg
atttggaaaaacccgcagttttgacccgcaaaatcaagGACAGTAAAATT
AGCAGTAAAACACACCACAAAAACTCACTTATACTACTGACGGAGGagga
tatctttttttttatttccgaaTGCCccagtatttttttttaaagagata
aTCAGTTatgccactttgaaattttgaacctttgcttgaaaacaatagaa
aaaagtgtgaaaagtccctgaaaagtcccatttttcgagatttcaaagtg
gcataacttgagttaagaaaataaaaacaccgaaaaatttagaggttttt
cctaaaatcctagaagctatctgcaggcaaaatatctcaaaccatctgat
tatccctttaagtctAAAATAGTATTGACGTCTGTTGACGTTCTTACAAT
TATTAAACCGTAAAATTGGTCTCCAAACAAATCTGTTGTAACGAAAGCAA
TTGTCATAATTCAGAGCTATTTAGTCAGCAGATTTTGTAAATTGAGGAAT
TTCTCAGAACACGTCCAGCCTAAAAACTCTTacaaactgggttctaataa
aaactGAAACAACCAAGTTAGACTTTGACATGTACTTTGACCTGTATGTA
TTTTCTTTTAGAAATAGCCTTGCCAAGGCACTTCCGACTCGGAGTTATCN
TTCATTTTCTTTTAGAAATAGCCTTAACAAGGCACTTCCGACTCGGAGTT
ATTCCAGTTTTATCTCCAGAATGGATTTTCAGATTCTCAATCCGTTTTCA
TTCGTTGGATTATGTCGGGGATGGAACATTCGCTTATTGCACAGTTCTTC
ACCTCACTCAAGGGGGAAACAATGATGTGTACGGGGATAGAACCCCAAGT
ATTACGATCGGAGGTAGTATCTTTTCTATCAAAGAAATCTTCTGATAATA
CTAACTTAagtggaagaaattttcgcaaaatttaatttcgcggttcacag
ctcaaaattaggaagtttcgcggaatttaatttcgcagttgagaaggatt
ttttatttaatattcTAGTTTGCCCTAATAATACCAATTTTataagtgat
ttttttaatcatgagaatatttgtgtttcgcggaatttaatttcgcggat
ttgtcaAGAAACCGCAAAATcgaattccgcgaaaatttgtcccgcaaaaa
tttcttcccttaaggtaccttttaaaattgtataatttttttctgacacC
CGGACCGGGGAGGTGCCAAAAGTTCAATTACAATCTGCACCTGATTTTGG
TCTGAGATGAgggtagcctggagatccatgctatgatttcttattctata
tactgatggcgaaatatatagcatagtatgggctgagagtttgaatttcc
cagatcctgataacggttgaaaacataggcaatcaaattttgttattctt
ttactggtcacacatttttttagagaaagcgcaagttccgaaattttgtt
tttattttagtaagcgAGGACAGCGATAAATTCGATTATCccattgtaaa
ttttttgaggcagaaatctgcctcacaggtcatagccgtcctgtatacat
caggTTACAAAAGTACAAGACGGTTCTGCTGTCTAAGACGAGGGTGGCAT
TTTGATGGAGAGggtaaacacttttttatatCTCGAGGGTCGAAATTTCT
ATTAAAGGTATAGAGTAGTTGTTTAAACATTTGAAGCTGTGAAAAGTAAA
AGTTTTCCATAAAATTTTGCCACTGTAAAAGAggccttcattttttcatt
atcaATAAATGCAAACAAGTATCTAGGATTTTTAAGAATTGAGATGTCCA
GCAAAGTCcgtttccgccattatggatgcaaacttttgaatttgtagatG
CAATACCTCGCAGATCGAACGTTTGCTATCTTAGTGGCAGAAATTACGTA
ACTTGACAAAAGATGAAGAACCTCTATATCTCTATATTAtcgttaatttt
catttttttaaaggaaacCCAACATTGAACGAGATGAAAATAAGTGTGCC
CGTCAATGGAAATAAATCATATCGACAGAACATTCCTTTCACCCTAGCAG
TCAACGAAACTATGGATGTTGAGATTCATCAACGATACATAAGCAACGGT
GAATATCGATATTTCATTCGCATCAATGAAGAAGATATTCATTCTGTCGT
CAATACCGaagcaaaacaattttataatgtTAAAGTGTTTGCTGGTCAAG
CCTTTTATGCTAAGCAAGCTGTTTGCCCAGCTTCAATCAAGAATGTTAAA
CAttacaattttttgtaaataaaaagatTCTTTGTTGTAAAATGTCTTCA
GAAGTGGGTGGCCATCGACCAACAggcaaacaacgttgtttcaacgttta
tctcacgttcacaacatccatataacgttagacgaacgttaaaacaacgt
tgtgtgccagctgggcatgGTCAAACATATTAAAGAACCATTGCTTGAAT
AACACCGTtatggaatttggcaactgaacctaaaaatTCCAATTTTAAGA
GCAATTTAAAGTGTAAATTGCCAATTTTCCTCCAAGAATGCTTAACCCTA
AttatactaggcttttagggaaggttcaaaactaggggggcTGTTCTCAG
AGtcaaaaatgcttattttatcctaaatattcaataaattacggtttaaa
cgatatatttgacatcaaaaataaatttgtattggaaatgtgtcaatttt
tgtgacaccttactgatagaaatgtcatcatgctcaaggtgtgaaaattt
ttaggtgtccaTTTTGAATATCcattacaaaatgaaaaaacacttaTGTG
AACacaaatgaagccacttatttcccatccagaacgcccccgcgtggttt
ttacacaaactctatattaaaagtaaaatctatcgctaaaatttaaaaaa
atgcagtcctcaaaaacaaagcaactgctagatacaatccgtcggcGTAA
TAAGAAATAAGTGGCATCATTTGTCCTTGCCTGGGGAAGGTAAGAGATTC
TACTCTAaatccttcgggctttaaactcaatgggttaAATAGTGCTTGTT
TTGCTGctaaaatgataaaatctcattggttgaaaaTACCGAAGAACTGC
GATCGCAGACAGGTAAAACGCGTTAACAATACAATGGGATTTGCTTAAAT
AATCGGAAAATCTATCTATGATTTCATAATAAGGACATCGTTCTTGAAAT
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039066XLOC_039066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062340-exon-scaffold_363-1491911889:163212..163336TCONS_00062340-exon-scaffold_363-1491911889:163212..163336Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1510915933:163212..163336TCONS_00062340-exon-scaffold_363-1510915933:163212..163336Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1575043694:163212..163336TCONS_00062340-exon-scaffold_363-1575043694:163212..163336Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1491911889:164616..164676TCONS_00062340-exon-scaffold_363-1491911889:164616..164676Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1510915933:164616..164676TCONS_00062340-exon-scaffold_363-1510915933:164616..164676Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1575043694:164616..164676TCONS_00062340-exon-scaffold_363-1575043694:164616..164676Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1491911889:165373..165388TCONS_00062340-exon-scaffold_363-1491911889:165373..165388Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1510915933:165373..165388TCONS_00062340-exon-scaffold_363-1510915933:165373..165388Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1575043694:165373..165388TCONS_00062340-exon-scaffold_363-1575043694:165373..165388Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1491911889:165443..165624TCONS_00062340-exon-scaffold_363-1491911889:165443..165624Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1510915933:165443..165624TCONS_00062340-exon-scaffold_363-1510915933:165443..165624Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1575043694:165443..165624TCONS_00062340-exon-scaffold_363-1575043694:165443..165624Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1491911889:166725..167963TCONS_00062340-exon-scaffold_363-1491911889:166725..167963Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1510915933:166725..167963TCONS_00062340-exon-scaffold_363-1510915933:166725..167963Clytia hemisphaericaexon
TCONS_00062340-exon-scaffold_363-1575043694:166725..167963TCONS_00062340-exon-scaffold_363-1575043694:166725..167963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_363supercontigscaffold_363:163212..167963 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.1976e-07	0	0	0	0	0	0	0	0	0	0	0	0.717982	0.491505	0.294573	0	0	0	1.41504	0.431659	0.407076	0.29446	0.559843	0	0	1.30102e-07	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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