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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062369 ID=TCONS_00062369|Name=TCONS_00062369|organism=Clytia hemisphaerica|type=transcript|length=572bp
TTAGACATAAAATCATTGACCAATTTCTTGTTCATTGTATCTTAGAGTAA
AAGCACAACTAAAAACATGGATATTGATAATTAATATTGCTGTGAAAGGC
GAAGGTGAAAGGTTGTGTACAATCAAAGATCATCTTGTTTGAAGTAGAGA
TGGATGGTCGTGAAAATGttgaaatcgaaatcgaaagtgaaagtgactgG
GATAGTTATGAAGATGAAAATCCTTCTGAAAGTGAATTGGACAGTGACGT
GGAAATCAAAAACTCATTTGCCACCTCTGCAATGGATAGATTGGGGAACT
TGCTATCTTCAATTACAGAGAATAATGAAAATGaacaaatcacaaaagaa
atcCATTCAGCCCTATCAATgGTCCATCAATCAGGAATCCAATACTTTGG
ATATCTATTGGAAAATGATAATTCCAGAATTGAGAAAGGGATTGAATCAT
TGAAAGGCGTAGATCAATTTATTGTAAGAAGTATGGAAAAAGGTAGCAAA
GAATTACCAGAAGCTGTACAATTTTCATTTCACTTGGCAGAATTGACAAG
AACTGTCACTGGTGAAACGCGA Run BLAST on NCBI protein sequence of TCONS_00062369-protein >TCONS_00062369-protein ID=TCONS_00062369-protein|Name=TCONS_00062369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MDGRENVEIEIESESDWDSYEDENPSESELDSDVEIKNSFATSAMDRLGN
LLSSITENNENEQITKEIHSALSMVHQSGIQYFGYLLENDNSRIEKGIES
LKGVDQFIVRSMEKGSKELPEAVQFSFHLAELTRTVTGETR Run BLAST on NCBI transcript from alignment at scaffold_364:17523..20074+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062369 ID=TCONS_00062369|Name=TCONS_00062369|organism=Clytia hemisphaerica|type=transcript|length=2552bp|location=Sequence derived from alignment at scaffold_364:17523..20074+ (Clytia hemisphaerica)
TTAGACATAAAATCATTGACCAATTTCTTGTTCATTGTATCTTAGAGTAA
AAGCACAACTAAAAACATGGATATTGATAATTAATATTGCTGTGAAAGGC
GAAGGTGAAAGGTTGTGTGTAAGTTGATTTCATTTAATTTAATCTTtatt
gtatatttatttttattcttcCACTGCATCTCTTTAGGAAAATATTGTAT
TTAAAAAAACccaatttcaagtttttatttttttgtcagATTCGAAATCA
GTGATCTATTAGATTACACGATAACCTCTAATCAAAAGATAAAAGATTGT
TAACAGAATCGAAAAAGCAANGCACCCTCCGCACCACAGAAAGTTTCCAT
GAAAATTAGCTTCCTTGAGTTGATGTACTTTTAAATTTCCTagtattgtt
ttttgttttcattttaaccTGATTCTgattgagaagaaatttttAAGATA
TTGTATACTTTTGTTGTTACAACTCCCAAAGAAATTGAGATAAAACTTCA
CTCGATTTTAATTCTAGCTCAAATTCTTGTGACTAAGAAGAATGCCGTAC
GCTCTGTAGCTACGTAAAATCTTTTTCAGACATTAGGTATTCCTTTTAAA
AGTTAGACATAAAATCATTGACCAATTTCTTGTTCATTGTATCTTAGAGT
AAAAGCACAACTAAAAACATGGATATTGATAATTAATATTGCTGTGAAAG
GCGAAGGTGAAAGGTTGTGTGTAAGTTGATTTCATTTAATTTAATCTTta
ttgtatatttatttttattcttcCACTGCATCTCTTTAGGAAAATATTGT
ATTTAAAAAAACccaatttcaagtttttatttttttgtcagATTCGAAAT
CAGTGATCTATTAGATTACACGATAACCTCTAATCAAAAGATAAAAGATT
GTTAACAGAATCGAAAAAGCAAACTAATAAGACATTTTTCTCATCCTACA
GACAATCAAAGATCATCTTGTTTGAAGTAGAGATGGATGGTCGTGAAAAT
GttgaaatcgaaatcgaaagtgaaagtgactgGGATAGTTATGAAGATGA
AAATCCTTCTGAAAGTGAATTGGACAGTGACGTGGAAATCAAAAACTCAT
TTGCCACCTCTGCAGTAAGTTAAGATATGATAAAAAAGGAACTCAACTTA
ATGTACCATTTATTTTGGTTTAACCCCATTCATACTTGGCTTGTTTTATG
GGCGGCTcacaactgggggggggggtattatcctgtaccaccccttaact
tttgatctagctAGTCTTTTTGAATGTTGAATTTGACACATGAGATCCTT
GTCATAttaggtaacttttgacaaaaaagtcttttgatgacgtcactcgt
cataaggctttagaaaaatattcaaagtttCAAAGGCTAATTTCATCCTA
TGTATttaataaattacggtttaaacgatatatttgacataaaaaatcca
TGTACTGAAAATGTGTCAATTTTAATGACACTTTTACTGACAGAGATATC
ATTATGTTTGCTCAAAGGGgtaaaaaatgtgtcaaaaattattttatttt
gaagctaaatgaAAATTAGGAATTTTACCGAAGATTTCGAAACGTCCTAA
GCCCTATTATTTTAGAAGCTGTTAACATTAGTTTCCCCACCGAATAGGGG
AATTGGGTTAAACTGATGCATTAGAAATGCAATCATTCAACAGAAGATAA
GCAGTATACATTTACTTGTCAACCAGCATGAATCTTCTATTTCTAGATGG
ATAGATTGGGGAACTTGCTATCTTCAATTACAGAGAATAATGAAAATGaa
caaatcacaaaagaaatcCATTCAGCCCTATCAATggtaattgttttttt
atttttaacgcTTCAATGATTTAAATTTCTTGTCTTCAACTCTTTACACC
CTAAAGTTAATTTAAGCAAAGGTTTTACTGTAACTACTTTTAAGTTTTTC
AACCACCAGCCTTTATGTAGAAATTGTATTCCAGCCACCCCTAGAAATAA
TTTCAATGTTGCTGGCCGTCTTTCTGAAAATAAAGTCTAATGAAAtgaaa
gataaagaaaaaagaaattgaattgttttctattttttaaaggttttttc
tGTACACCCTTTGGAGTCTCGTATTAGCATTCTCGTCTCAAATTATAGTT
TTTAGAGACTATAGAAGAGTTAAGCCGGTCTAGTTGCTTAACAAGAATGA
CTGTATCATTAAGGGTCTCAATTGAGTCAGTTCTATTCCTGCCTGAAACC
TTACAAAATGTCGTTTGAAAAATGGTTTGAATTCATACACATTAAGGTCT
CTTTGTAATCTTTAATTAgaatttttaatggtttttacTCTTTTTTGGTA
GGTCCATCAATCAGGAATCCAATACTTTGGATATCTATTGGAAAATGATA
ATTCCAGAATTGAGAAAGGGATTGAATCATTGAAAGGCGTAGATCAATTT
ATTGTAAGAAGTATGGAAAAAGGTAGCAAAGAATTACCAGAAGCTGTACA
ATTTTCATTTCACTTGGCAGAATTGACAAGAACTGTCACTGGTGAAACGC
GA Coding sequence (CDS) from alignment at scaffold_364:17523..20074+ >TCONS_00062369 ID=TCONS_00062369|Name=TCONS_00062369|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_364:17523..20074+ (Clytia hemisphaerica)
ATGGATGGTCGTGAAAATGttgaaatcgaaatcgaaagtgaaagtgactg
GGATAGTTATGAAGATGAAAATCCTTCTGAAAGTGAATTGGACAGTGACG
TGGAAATCAAAAACTCATTTGCCACCTCTGCAATGGATAGATTGGGGAAC
TTGCTATCTTCAATTACAGAGAATAATGAAAATGaacaaatcacaaaaga
aatcCATTCAGCCCTATCAATgGTCCATCAATCAGGAATCCAATACTTTG
GATATCTATTGGAAAATGATAATTCCAGAATTGAGAAAGGGATTGAATCA
TTGAAAGGCGTAGATCAATTTATTGTAAGAAGTATGGAAAAAGGTAGCAA
AGAATTACCAGAAGCTGTACAATTTTCATTTCACTTGGCAGAATTGACAA
GAACTGTCACTGGTGAAACGCGAATGGATGGTCGTGAAAATGttgaaatc
gaaatcgaaagtgaaagtgactgGGATAGTTATGAAGATGAAAATCCTTC
TGAAAGTGAATTGGACAGTGACGTGGAAATCAAAAACTCATTTGCCACCT
CTGCAATGGATAGATTGGGGAACTTGCTATCTTCAATTACAGAGAATAAT
GAAAATGaacaaatcacaaaagaaatcCATTCAGCCCTATCAATgGTCCA
TCAATCAGGAATCCAATACTTTGGATATCTATTGGAAAATGATAATTCCA
GAATTGAGAAAGGGATTGAATCATTGAAAGGCGTAGATCAATTTATTGTA
AGAAGTATGGAAAAAGGTAGCAAAGAATTACCAGAAGCTGTACAATTTTC
ATTTCACTTGGCAGAATTGACAAGAACTGTCACTGGTGAAACGCGAATGG
ATGGTCGTGAAAATGttgaaatcgaaatcgaaagtgaaagtgactgGGAT
AGTTATGAAGATGAAAATCCTTCTGAAAGTGAATTGGACAGTGACGTGGA
AATCAAAAACTCATTTGCCACCTCTGCAATGGATAGATTGGGGAACTTGC
TATCTTCAATTACAGAGAATAATGAAAATGaacaaatcacaaaagaaatc
CATTCAGCCCTATCAATgGTCCATCAATCAGGAATCCAATACTTTGGATA
TCTATTGGAAAATGATAATTCCAGAATTGAGAAAGGGATTGAATCATTGA
AAGGCGTAGATCAATTTATTGTAAGAAGTATGGAAAAAGGTAGCAAAGAA
TTACCAGAAGCTGTACAATTTTCATTTCACTTGGCAGAATTGACAAGAAC
TGTCACTGGTGAAACGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062369-exon-scaffold_364-1491911889:17523..17640 | TCONS_00062369-exon-scaffold_364-1491911889:17523..17640 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1510915933:17523..17640 | TCONS_00062369-exon-scaffold_364-1510915933:17523..17640 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1575043694:17523..17640 | TCONS_00062369-exon-scaffold_364-1575043694:17523..17640 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1491911889:18474..18636 | TCONS_00062369-exon-scaffold_364-1491911889:18474..18636 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1510915933:18474..18636 | TCONS_00062369-exon-scaffold_364-1510915933:18474..18636 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1575043694:18474..18636 | TCONS_00062369-exon-scaffold_364-1575043694:18474..18636 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1491911889:19269..19358 | TCONS_00062369-exon-scaffold_364-1491911889:19269..19358 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1510915933:19269..19358 | TCONS_00062369-exon-scaffold_364-1510915933:19269..19358 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1575043694:19269..19358 | TCONS_00062369-exon-scaffold_364-1575043694:19269..19358 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1491911889:19874..20074 | TCONS_00062369-exon-scaffold_364-1491911889:19874..20074 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1510915933:19874..20074 | TCONS_00062369-exon-scaffold_364-1510915933:19874..20074 | Clytia hemisphaerica | exon |
| TCONS_00062369-exon-scaffold_364-1575043694:19874..20074 | TCONS_00062369-exon-scaffold_364-1575043694:19874..20074 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:17523..20074 + |
Blast
The following BLAST results are available for this feature:
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