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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062411 ID=TCONS_00062411|Name=TCONS_00062411|organism=Clytia hemisphaerica|type=transcript|length=4854bpRun BLAST on NCBI protein sequence of TCONS_00062411-protein >TCONS_00062411-protein ID=TCONS_00062411-protein|Name=TCONS_00062411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1428bp MGADMELVRLFNMELSSIYEGKPPVSKAKMATITRYAVKALKYYKHIVHSRun BLAST on NCBI transcript from alignment at scaffold_364:189557..201210- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062411 ID=TCONS_00062411|Name=TCONS_00062411|organism=Clytia hemisphaerica|type=transcript|length=11654bp|location=Sequence derived from alignment at scaffold_364:189557..201210- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_364:189557..201210- >TCONS_00062411 ID=TCONS_00062411|Name=TCONS_00062411|organism=Clytia hemisphaerica|type=CDS|length=68592bp|location=Sequence derived from alignment at scaffold_364:189557..201210- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062411 vs. Swiss-Prot (Human)
Match: SFR15 (Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4 PE=1 SV=3) HSP 1 Score: 196.823 bits (499), Expect = 1.043e-50 Identity = 87/145 (60.00%), Postives = 112/145 (77.24%), Query Frame = 1
Query: 88 MELVRLFNMELSSIYEGKPPVSKAKMATITRYAVKALKYYKHIVHSVEKFIHKCHNEYKLPALYVLDSIIRQSRHQFGPEKDLFGPRFEKNIKFLFQHIYQCPSEDKPKVVRVLNLWQKNGIYSPDVISPLIDMASQSQKSLQSA 522
M+ V FN EL S+ + KPP+S+AKM IT+ A+KA+K YKH+V VEKFI KC EYK+P LYV+DSI+RQSRHQFG +KD+FGPRF KNI FQ++Y CPSEDK K+VRVLNLWQKNG++ ++I PL+DMA+ + + A
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVA 145 HSP 2 Score: 92.8189 bits (229), Expect = 1.007e-18 Identity = 40/127 (31.50%), Postives = 74/127 (58.27%), Query Frame = 1
Query: 1453 CVTIASVTVWVGRLPKYFSKDALLNHFNEYADVKNVDMIESRGCAFVTMATRFDADSALRYMK--HKRIDGADVKLNWGKTKAL-FDYSQYWEEKSGCAFVPWDQVNLPKLVSLVDTYLIDEDTLPP 1824
++ S T+WVG+L K ++ + + E+ +++++MI RGCA++ M R DA AL+ + + +++ +K+ W K + DY QYW+ + G ++PWD+V +L S + ++D DTL P
Sbjct: 502 TASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNP 628 The following BLAST results are available for this feature:
BLAST of TCONS_00062411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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