TCONS_00062384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062384
Unique NameTCONS_00062384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062384 ID=TCONS_00062384|Name=TCONS_00062384|organism=Clytia hemisphaerica|type=transcript|length=1809bp
CAGGTTTTCACtgagaataaataaaaacattccAAAGTACGGCTTCTGAG
CAATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAAC
GTGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTT
ATGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGG
AACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTA
AAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATA
CACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGTAGGA
GAGTTTATTACTTTTCAACCAAACAATTTAGTGGGGGACTGGGCTACGAC
TATGAACAAGATATGGGCAATCTAAGCAAGCTTCCAAGACACATGAGTTT
TGTTATTAATGAAGATGTGACAACTGATTATTGTGACATTGCAAATTTGA
TTGTGTGGACCATAGCAATGGGAATTCCATATATTTCCCTATATGATCGC
CATGGCATTCTCAAAGCAGGAGAATCAAGGCTTGGAAAAGTCATCAAACA
AAAAGTTGTCAAAACATTTGGTCAGAAGAAAGCACAAGGAATTGATGTTG
TCCTGAAGGATAGTTCTTATAGATATCAAAATGGAATAAcaTACCCAAAG
AAGTTTTGTGTTCAGTTACTATCTGAAGAAGATGGCAAGGCAGACATTAT
TTCAACAACTAAAAGGATAGCAGCAGATTATGCAGACAATAATATAGAGG
AGAAGAATATAAATATTGACCATATCAATAAATCTCTGAAAGcaATTGAA
AATATACCAGACCCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACT
AAATGGTTATTTACCCTGGCAGACGAGATTATCAGAAATTCTGAATTTAA
AAACACACAAGAAGATATGTTACAGTCAATACTACAATCTACTTGCGCGC
TTCAGCAAATGTGATCAACGGTTCGGAAAATAATATTAAAAGAAACGAAG
AGTTAGTCTATTTTTATTGATTGATGGTGATCATAAACTGATGTTGCTTG
ATTCGCAATGTAACCCCAAAACTAGCCTctgtaatgaaaataaaattatt
tttagaacGTGGAGTGCATCAAGCCGATTCcgattttgaagaattttgtg
TTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGTTATTGGAACATTTTCG
AGCTTTCAGATCCTGAGTTCTTTGCAGGGAATActcctttttctcaaata
ttacgaatTTGATTGTAGGTCTGACATTATGAAAGGTTCTTTGTGACTAA
GCAACATCAGTTAGTACtttttgaattgcaaaaaatgttAAACAATTTCG
TTGTCCAATTTATTATTTCAGTAAACCAGCCTTTAATTTAAGAAACGCAA
CggcaattttgtaaatattgacTTTATTATCATAGTATCGAGATGATCAA
ACCAAGTTTGTGTGCAAACTAGGATAATCACGTTTtggaattattttgaa
tttttataataGTAGCAGAAAGTTTGGgatatattttaaaatttaggaaa
tttgtaaagctttttttCTCCCCTGTTGAAGTGGGAAAACCCCAttcttt
ctttaaattttgTTCTAGAAAGATGAATTAAGAATTTGAACTCTATTACT
GTTTCAATATTAATTCGTCTTTTGCTGTTGAGAAAAGAATGACTACTTCC
AGACTATAGccatctctctaattcgaatgctTCTGtaagtgtctgcccct
atatCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_364:212106..216280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062384 ID=TCONS_00062384|Name=TCONS_00062384|organism=Clytia hemisphaerica|type=transcript|length=4175bp|location=Sequence derived from alignment at scaffold_364:212106..216280+ (Clytia hemisphaerica)
CAGGTTTTCACtgagaataaataaaaacattccAAAGTACGGCTTCTGAG
CAATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAAC
GTGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTT
ATGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGG
AACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTA
AAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATA
CACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTAC
ATTGAAAGTCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTAT
TAATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACC
AAACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAA
TCTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGA
CAACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATG
GGAATTCCATATATTTCCCTATATGATCGCCATGGTAAGACTTTCATCAA
ATTCTAAAGCTGCCAAAAAGATTGGGGATATGTATACAcattctttttat
atatataagATTTCTACAACCTTCATTAAAGATGGTAGTAACAGGAAAGT
tagaatcgctgattgaaacttattttctttgcttagcgatcAGAGAGGAA
AATACCTTTTGTCtacagtgattccgaccttcctatcaTTCTAGGGTGTG
TtgaacattagaccaacttacggtataagGCTTGGatggccaatttctta
agaaaatggacaaaaatgctcacatggtgaaataaaaaaaatataaaaaa
aaacgtgtacagttgGGATAATGCTAGGCAGGGCTTACTACAGGCAGGCC
ATCTTGAGACGTCTGTTTTGTAAgagacaaaaatctaaaatcaaatctga
aacAGGGCGAGGGGGTTCATTCAGCTGGTACCAGCAGGTAACAGACATCA
TGAtggtcagtcaggcacatcctggcaaatgaacggggtatttttcactt
gcaattggtggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagca
ctgaataccccacgcaattgaaccgggttggaaatattttgcttcatttc
aaagaactgcatggaggaaattttttttccatgggtcaattttgtcttcg
aagattgaagaaacttttaacgaaaaaataaagttcccagttttcttcct
tttttcccattttcagtttgaagttcatttttattcattttcacgctttt
agcgtcctatctcatttacactgggtgacgaataccccatgcaaatgctc
accccgttcatttgccaggatgtgcctgactgatgGTTATACTGCCGTGG
ATATTTGCAtttgtaattttgctgaaagcTTATTTAAAaggaattttatt
ttgtaaCCATGAATTTTCTTTCAGGCATTCTCAAAGCAGGAGAATCAAGG
CTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAA
AGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAA
ATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTGCTgcgcaaattt
tgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaagGTGACAAATTG
ACCTGAATTGACACAAATCATAGAAAAAGTGCtatattcaaaaactttct
caaaattATCTGACCGGTATTATCAAAATTCTAAGAATCTGATGgagtgt
tttcttttctttcagcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCT
GAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGC
AGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACCATA
TCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCACTACGTGTTTGAA
ATGTCTAGGATATGCTTTGGTTATCTCtgtctttcttttctttggaAGTC
ACCTGAATGATTCGAGAGAGAGacccggggggggcagctgggcaaaagga
ccgacgggtatgtgcgggcactaagggtgtctttttcaaggcacctcaaa
tgcactgtaagggtcggaaaaactagNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTCAGGCATTCTCAAAGCA
GGAGAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATT
TGGTCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTT
ATAGATATCAAAATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTG
CTgcacaaattttgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaa
gGTGACAAATTGACCTGAATTGACACAAATCATAGAAAAAGTGCTATATA
CAAAAACTACCTCAAAATTATCTGACCGGTATTATCAAAATTCTAAGAAT
CTGATGgagtgttttcttttctttcagcaTACCCAAAGAAGTTTTGTGTT
CAGTTACTATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAA
AAGGATAGCAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAA
ATATTGACCATATCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCAC
TACTATTTGAAATGTCTAAGGATATGCTTTGGTTATCTCtgtctttcttt
tctttggaAGTCACCTGAATAATTCGAGAGAGAGAGGAGGAAAAATGAGG
TTTCAAATCAgcgttttattttctttttaagcaATTGAAAATATACCAGA
CCCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATT
TACCCTGGCAGACGAGATTATCAGAAATTCTGTAAGTAAAAGTGTACGCA
GGACCAGGAGAATCTCACAATACATTGAAATACAAAATGACCTAGTCGAA
TTAAAAGACCTCATTTGGTTTTCTTTAAGGGATAATCATGGGGATTTAAT
TTTATAAAATAGTTGTCCTGATTATTTGGTCGGAAATTGTAGACTTGTGT
AGATTTGCGATAatgtaatattttgattttgatgtttgttGTTTGTCTTG
TTTTGTAGGAATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTA
CAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAAT
ATTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGATTGATGGTGATCAT
AAACTGATGTTGCTTGATTCGCAATGTAACCCCAAAACTAGCCTctgtaa
tgaaaataaaattatttttagaacGTGGAGTGCATCAAGCCGATTCcgat
tttgaagaattttgtgTTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGT
TATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTCTTTGCAGGGAATAc
tcctttttctcaaatattacgaatTTGATTGTAGGTCTGACATTATGAAA
GGTTCTTTGTGACTAAGCAACATCAGTTAGTACtttttgaattgcaaaaa
atgttAAACAATTTCGTTGTCCAATTTATTATTTCAGTAAACCAGCCTTT
AATTTAAGAAACGCAACggcaattttgtaaatattgacTTTATTATCATA
GTATCGAGATGATCAAACCAAGTTTGTGTGCAAACTAGGATAATCACGTT
TtggaattattttgaatttttataataGTAGCAGAAAGTTTGGgatatat
tttaaaatttaggaaatttgtaaagctttttttCTCCCCTGTTGAAGTGG
GAAAACCCCAttctttctttaaattttgTTCTAGAAAGATGAATTAAGAA
TTTGAACTCTATTACTGTTTCAATATTAATTCGTCTTTTGCTGTTGAGAA
AAGAATGACTACTTCCAGACTATAGccatctctctaattcgaatgctTCT
GtaagtgtctgcccctatatCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039091XLOC_039091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062384-exon-scaffold_364-1491911889:212106..212435TCONS_00062384-exon-scaffold_364-1491911889:212106..212435Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1510915933:212106..212435TCONS_00062384-exon-scaffold_364-1510915933:212106..212435Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1575043694:212106..212435TCONS_00062384-exon-scaffold_364-1575043694:212106..212435Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1491911889:212516..212739TCONS_00062384-exon-scaffold_364-1491911889:212516..212739Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1510915933:212516..212739TCONS_00062384-exon-scaffold_364-1510915933:212516..212739Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1575043694:212516..212739TCONS_00062384-exon-scaffold_364-1575043694:212516..212739Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1491911889:213680..213814TCONS_00062384-exon-scaffold_364-1491911889:213680..213814Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1510915933:213680..213814TCONS_00062384-exon-scaffold_364-1510915933:213680..213814Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1575043694:213680..213814TCONS_00062384-exon-scaffold_364-1575043694:213680..213814Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1491911889:214021..214173TCONS_00062384-exon-scaffold_364-1491911889:214021..214173Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1510915933:214021..214173TCONS_00062384-exon-scaffold_364-1510915933:214021..214173Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1575043694:214021..214173TCONS_00062384-exon-scaffold_364-1575043694:214021..214173Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1491911889:215087..215186TCONS_00062384-exon-scaffold_364-1491911889:215087..215186Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1510915933:215087..215186TCONS_00062384-exon-scaffold_364-1510915933:215087..215186Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1575043694:215087..215186TCONS_00062384-exon-scaffold_364-1575043694:215087..215186Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1491911889:215414..216280TCONS_00062384-exon-scaffold_364-1491911889:215414..216280Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1510915933:215414..216280TCONS_00062384-exon-scaffold_364-1510915933:215414..216280Clytia hemisphaericaexon
TCONS_00062384-exon-scaffold_364-1575043694:215414..216280TCONS_00062384-exon-scaffold_364-1575043694:215414..216280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:212106..216280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.2149	68.1441	30.0171	25.4879	26.6729	19.6123	25.1295	25.6778	13.7896	11.8499	14.8043	13.0618	11.8123	11.7465	12.956	13.4579	14.3236	15.1845	9.0512	12.567	17.1419	17.1914	38.7459	35.7919	8.48712	11.3884	19.6716	17.149	34.4676	33.2151
Blast
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BLAST of TCONS_00062384 vs. Swiss-Prot (Human)
Match: NGBR (Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.537e-32
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 2 
Query:  401 YEQDMGNLSKLPRHMSFVINE-DVTTDYCDIANLIVWTIAMGIPYISLYDRHGILKAGESRL-GKVIKQKVVKTFGQKKAQGIDVVLKDSSYRYQNGITYPKKFC---VQLLSEEDGKADIISTTKRIAADYAXXXXXXXXXXXXXXXXSLKAI---ENIPDPELVVQFGNIYSLNGYLPWQTRLSEILNLKTHKKICYSQYYNLLARFSKCDQRFGK 1030
            +  D  +L KLP HM  VI E +    + DIA+L+VW +A+GI YIS+YD  GI K   SRL  +++KQ       Q++  G+D       +   N        C   V++LS EDGKADI+    R A D+     +++    D    +L ++      PDP+LV++FG + S  G+LPW  RL+EI++L +H  I Y  +++ L +++ C+QR GK
Sbjct:   87 WRADGRSLEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQ-------QQELLGLDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIV----RAAQDFCQLVAQKQKRPTDLDVDTLASLLSSNGCPDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 293
The following BLAST results are available for this feature:
BLAST of TCONS_00062384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NGBR1.537e-3235.78Dehydrodolichyl diphosphate synthase complex subun... [more]
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