TCONS_00062386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062386
Unique NameTCONS_00062386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062386 ID=TCONS_00062386|Name=TCONS_00062386|organism=Clytia hemisphaerica|type=transcript|length=1838bp
AATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAACG
TGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTTA
TGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGGA
ACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTAA
AGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATAC
ACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTACA
TTGAAAGTCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTATT
AATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACCA
AACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAAT
CTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGAC
AACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATGG
GAATTCCATATATTTCCCTATATGATCGCCATGGCATTCTCAAAGCAGGA
GAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGG
TCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATA
GATATCAAAATGGAATAAcaTACCCAAAGAAGTTTTGTGTTCAGTTACTA
TCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGC
AGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACC
ATATCAATAAATCTCTGAAAGcaATTGAAAATATACCAGACCCAGAGCTT
GTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATTTACCCTGGCA
GACGAGATTATCAGAAATTCTGAATTTAAAAACACACAAGAAGATATGTT
ACAGTCAATACTACAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGG
TTCGGAAAATAATATTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGAT
TGATGGTGATCATAAACTGATGTTGCTTGATTCGCAATGTAACCCCAAAA
CTAGCCTctgtaatgaaaataaaattatttttagaacGTGGAGTGCATCA
AGCCGATTCcgattttgaagaattttgtgTTAAGGTCTTCATTCAATCAA
AGTCGTTTCTCGTTATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTCT
TTGCAGGGAATActcctttttctcaaatattacgaatTTGATTGTAGGTC
TGACATTATGAAAGGTTCTTTGTGACTAAGCAACATCAGTTAGTACtttt
tgaattgcaaaaaatgttAAACAATTTCGTTGTCCAATTTATTATTTCAG
TAAACCAGCCTTTAATTTAAGAAACGCAACggcaattttgtaaatattga
cTTTATTATCATAGTATCGAGATGATCAAACCAAGTTTGTGTGCAAACTA
GGATAATCACGTTTtggaattattttgaatttttataataGTAGCAGAAA
GTTTGGgatatattttaaaatttaggaaatttgtaaagctttttttCTCC
CCTGTTGAAGTGGGAAAACCCCAttctttctttaaattttgTTCTAGAAA
GATGAATTAAGAATTTGAACTCTATTACTGTTTCAATATTAATTCGTCTT
TTGCTGTTGAGAAAAGAATGACTACTTCCAGACTATAGccatctctctaa
ttcgaatgctTCTGtaagtgtctgcccctatatCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_364:212157..216280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062386 ID=TCONS_00062386|Name=TCONS_00062386|organism=Clytia hemisphaerica|type=transcript|length=4124bp|location=Sequence derived from alignment at scaffold_364:212157..216280+ (Clytia hemisphaerica)
AATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAACG
TGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTTA
TGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGGA
ACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTAA
AGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATAC
ACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTACA
TTGAAAGTCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTATT
AATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACCA
AACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAAT
CTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGAC
AACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATGG
GAATTCCATATATTTCCCTATATGATCGCCATGGTAAGACTTTCATCAAA
TTCTAAAGCTGCCAAAAAGATTGGGGATATGTATACAcattctttttata
tatataagATTTCTACAACCTTCATTAAAGATGGTAGTAACAGGAAAGTt
agaatcgctgattgaaacttattttctttgcttagcgatcAGAGAGGAAA
ATACCTTTTGTCtacagtgattccgaccttcctatcaTTCTAGGGTGTGT
tgaacattagaccaacttacggtataagGCTTGGatggccaatttcttaa
gaaaatggacaaaaatgctcacatggtgaaataaaaaaaatataaaaaaa
aacgtgtacagttgGGATAATGCTAGGCAGGGCTTACTACAGGCAGGCCA
TCTTGAGACGTCTGTTTTGTAAgagacaaaaatctaaaatcaaatctgaa
acAGGGCGAGGGGGTTCATTCAGCTGGTACCAGCAGGTAACAGACATCAT
GAtggtcagtcaggcacatcctggcaaatgaacggggtatttttcacttg
caattggtggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagcac
tgaataccccacgcaattgaaccgggttggaaatattttgcttcatttca
aagaactgcatggaggaaattttttttccatgggtcaattttgtcttcga
agattgaagaaacttttaacgaaaaaataaagttcccagttttcttcctt
ttttcccattttcagtttgaagttcatttttattcattttcacgctttta
gcgtcctatctcatttacactgggtgacgaataccccatgcaaatgctca
ccccgttcatttgccaggatgtgcctgactgatgGTTATACTGCCGTGGA
TATTTGCAtttgtaattttgctgaaagcTTATTTAAAaggaattttattt
tgtaaCCATGAATTTTCTTTCAGGCATTCTCAAAGCAGGAGAATCAAGGC
TTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAAA
GCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAAA
TGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTGCTgcgcaaatttt
gaaataacaaTTTCTTTGAgtcaaaaagttttgtaaagGTGACAAATTGA
CCTGAATTGACACAAATCATAGAAAAAGTGCtatattcaaaaactttctc
aaaattATCTGACCGGTATTATCAAAATTCTAAGAATCTGATGgagtgtt
ttcttttctttcagcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCTG
AAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGCA
GATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACCATAT
CAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCACTACGTGTTTGAAA
TGTCTAGGATATGCTTTGGTTATCTCtgtctttcttttctttggaAGTCA
CCTGAATGATTCGAGAGAGAGacccggggggggcagctgggcaaaaggac
cgacgggtatgtgcgggcactaagggtgtctttttcaaggcacctcaaat
gcactgtaagggtcggaaaaactagNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTCAGGCATTCTCAAAGCAG
GAGAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTT
GGTCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTA
TAGATATCAAAATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTGC
TgcacaaattttgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaag
GTGACAAATTGACCTGAATTGACACAAATCATAGAAAAAGTGCTATATAC
AAAAACTACCTCAAAATTATCTGACCGGTATTATCAAAATTCTAAGAATC
TGATGgagtgttttcttttctttcagcaTACCCAAAGAAGTTTTGTGTTC
AGTTACTATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAA
AGGATAGCAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAAA
TATTGACCATATCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCACT
ACTATTTGAAATGTCTAAGGATATGCTTTGGTTATCTCtgtctttctttt
ctttggaAGTCACCTGAATAATTCGAGAGAGAGAGGAGGAAAAATGAGGT
TTCAAATCAgcgttttattttctttttaagcaATTGAAAATATACCAGAC
CCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATTT
ACCCTGGCAGACGAGATTATCAGAAATTCTGTAAGTAAAAGTGTACGCAG
GACCAGGAGAATCTCACAATACATTGAAATACAAAATGACCTAGTCGAAT
TAAAAGACCTCATTTGGTTTTCTTTAAGGGATAATCATGGGGATTTAATT
TTATAAAATAGTTGTCCTGATTATTTGGTCGGAAATTGTAGACTTGTGTA
GATTTGCGATAatgtaatattttgattttgatgtttgttGTTTGTCTTGT
TTTGTAGGAATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTAC
AATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAATA
TTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGATTGATGGTGATCATA
AACTGATGTTGCTTGATTCGCAATGTAACCCCAAAACTAGCCTctgtaat
gaaaataaaattatttttagaacGTGGAGTGCATCAAGCCGATTCcgatt
ttgaagaattttgtgTTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGTT
ATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTCTTTGCAGGGAATAct
cctttttctcaaatattacgaatTTGATTGTAGGTCTGACATTATGAAAG
GTTCTTTGTGACTAAGCAACATCAGTTAGTACtttttgaattgcaaaaaa
tgttAAACAATTTCGTTGTCCAATTTATTATTTCAGTAAACCAGCCTTTA
ATTTAAGAAACGCAACggcaattttgtaaatattgacTTTATTATCATAG
TATCGAGATGATCAAACCAAGTTTGTGTGCAAACTAGGATAATCACGTTT
tggaattattttgaatttttataataGTAGCAGAAAGTTTGGgatatatt
ttaaaatttaggaaatttgtaaagctttttttCTCCCCTGTTGAAGTGGG
AAAACCCCAttctttctttaaattttgTTCTAGAAAGATGAATTAAGAAT
TTGAACTCTATTACTGTTTCAATATTAATTCGTCTTTTGCTGTTGAGAAA
AGAATGACTACTTCCAGACTATAGccatctctctaattcgaatgctTCTG
taagtgtctgcccctatatCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039091XLOC_039091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062386-exon-scaffold_364-1491911889:212157..212739TCONS_00062386-exon-scaffold_364-1491911889:212157..212739Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1510915933:212157..212739TCONS_00062386-exon-scaffold_364-1510915933:212157..212739Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1575043694:212157..212739TCONS_00062386-exon-scaffold_364-1575043694:212157..212739Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1491911889:213680..213740TCONS_00062386-exon-scaffold_364-1491911889:213680..213740Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1510915933:213680..213740TCONS_00062386-exon-scaffold_364-1510915933:213680..213740Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1575043694:213680..213740TCONS_00062386-exon-scaffold_364-1575043694:213680..213740Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1491911889:214503..214576TCONS_00062386-exon-scaffold_364-1491911889:214503..214576Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1510915933:214503..214576TCONS_00062386-exon-scaffold_364-1510915933:214503..214576Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1575043694:214503..214576TCONS_00062386-exon-scaffold_364-1575043694:214503..214576Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1491911889:214783..214935TCONS_00062386-exon-scaffold_364-1491911889:214783..214935Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1510915933:214783..214935TCONS_00062386-exon-scaffold_364-1510915933:214783..214935Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1575043694:214783..214935TCONS_00062386-exon-scaffold_364-1575043694:214783..214935Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1491911889:215087..215186TCONS_00062386-exon-scaffold_364-1491911889:215087..215186Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1510915933:215087..215186TCONS_00062386-exon-scaffold_364-1510915933:215087..215186Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1575043694:215087..215186TCONS_00062386-exon-scaffold_364-1575043694:215087..215186Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1491911889:215414..216280TCONS_00062386-exon-scaffold_364-1491911889:215414..216280Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1510915933:215414..216280TCONS_00062386-exon-scaffold_364-1510915933:215414..216280Clytia hemisphaericaexon
TCONS_00062386-exon-scaffold_364-1575043694:215414..216280TCONS_00062386-exon-scaffold_364-1575043694:215414..216280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:212157..216280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.57279	1.1251	0	0	0	0.386489	0	0.727887	0	0	0	0	0	0	0	0	0.648369	0	0.184392	0	0	0	0	0	0	0	0	0.830185
Blast
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BLAST of TCONS_00062386 vs. Swiss-Prot (Human)
Match: NGBR (Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.217e-32
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 1 
Query:  430 YEQDMGNLSKLPRHMSFVINE-DVTTDYCDIANLIVWTIAMGIPYISLYDRHGILKAGESRL-GKVIKQKVVKTFGQKKAQGIDVVLKDSSYRYQNGITYPKKFC---VQLLSEEDGKADIISTTKRIAADYAXXXXXXXXXXXXXXXXSLKAI---ENIPDPELVVQFGNIYSLNGYLPWQTRLSEILNLKTHKKICYSQYYNLLARFSKCDQRFGK 1059
            +  D  +L KLP HM  VI E +    + DIA+L+VW +A+GI YIS+YD  GI K   SRL  +++KQ       Q++  G+D       +   N        C   V++LS EDGKADI+    R A D+     +++    D    +L ++      PDP+LV++FG + S  G+LPW  RL+EI++L +H  I Y  +++ L +++ C+QR GK
Sbjct:   87 WRADGRSLEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQ-------QQELLGLDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIV----RAAQDFCQLVAQKQKRPTDLDVDTLASLLSSNGCPDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 293
The following BLAST results are available for this feature:
BLAST of TCONS_00062386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NGBR2.217e-3235.78Dehydrodolichyl diphosphate synthase complex subun... [more]
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