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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062412 ID=TCONS_00062412|Name=TCONS_00062412|organism=Clytia hemisphaerica|type=transcript|length=1146bp
NTTCTTAATCATCATGGTCATCGTTGTCATGAATTTACTGgttggtttgg
ccATTGGAGATATCGAAGCTGTCCGAAACAATGCTTACATTCGAATGTTA
CGTGGTCAAGTTCGCATTCTTGAGATCCTTGAACGCACTTacccaaaatt
tattttacgTAGAATTCATACCAAAAATTCTGAAGTCGAAAAACCGAAAC
GCTACATGAACAATTGGGAAAGATTCATGGATTGGATTTCGACGTTGGAT
TTCGACGCACTCCAAGAAGATCAACAAGATATGACGTCACGTGAAATTCG
AATGCGAGAACAAATAACCAATCAGGAGAAAGAATTAGAAAAGACAAAGA
GTAAAATGAGAGTGTTGACGTCAGCAATTGAAGAGCAAGCAGAAATGATG
AGGGTGATGGTTGCTACTATTGATAAAATACCGAAGCATGAACTTAAAAA
GTATATTCACTGAGACTTTTGGTATTTTCCAtagatgtttttcatttttt
aaagtcCCTAGACTTTATTGTTTTCTTAATCAACTTGCACGTGTATTTAT
ATATAACTAATTTAGTATTTTATTTCACGACTCATTCAATTTCGTTAAAT
AATAGAAGGAATTTGATGAGGCAAAATCTAGTATTGCTACTTCGTTACTA
ATCTTTAGATTTTTAGACTAAATGCTTTTTATTGACACTAAAAGAACCAA
TTCTTTCGAAAGCAGTAAAATTCTGTACCTAGTTTCACGTCCAAAAAGGG
CTACAATTAGGAGattattttgtatatttttttgaaatgatttataTTCT
TTTGctgtaccttattggaactaattttcgcgggatttaattttagcgtt
tttcgcggcaaaatcgcgaaagttttgagagttaaaaaccgcgaaaatta
attcccgcgaaatacaatttgttcaaattatatcgataaatttgaaaaat
ccctaggaaaatgaaagaaatttgtccaaaaagaggcaaaactgcgaaaa
ttaaaacctacgaaaattccagaatgaaaaaacccgcgaaatgcaatttt
tcggacatttttattcgaccgcgaaattagttccaataaggtaatttAAT
TTAAACATAGAACACTATTTTtcgttttgtaatttttgtatgcAAA Run BLAST on NCBI transcript from alignment at scaffold_364:217948..220197- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062412 ID=TCONS_00062412|Name=TCONS_00062412|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at scaffold_364:217948..220197- (Clytia hemisphaerica)
NTTCTTAATCATCATGGTCATCGTTGTCATGAATTTACTGGTAAGTGAGT
CCTTGGATCCAGTCTCTTTTTCCATAATACCCTTTCTCTGTGCATGGGTA
TAGCGACAAGAATATTGTTGAAACTACCTACTGGGTTTTGGATTTGAAGA
AATCAAATAAGATAATTCTACAGAGCTGAAAGTTTACAAGAATCGTCCTG
ACTTTCACTCTAGTGCGGGAATCTGTGGATCCTTTGCTGTTGTGAAACTT
ACGTTTTTAAGATGAAAAAAAATATAGGTGTTTTTCATTGGATTTTCAAT
GAGTTCAAAAACAGGATATTCAGCTTAGGGTTTGTAAACGTAGTAATCGA
AATAAATTTCCAGCGGAATAACCAGCTGAATGGATCCTTATGGGCTACAC
TAGACGATGCTATCGTCCGTAAAATATACTATTATGATATAACATAGTTT
GTATATTATGAAACATAATATGTTACGCGGCGGATAGAGTCTGTGTTTAG
AACAGCTGACAAAAATTCCTTGTTCCTCTTAGATGAAACTCGCCTTAAAC
TATTGCATAGTCTAGGGCTACACAGGCTTTTCTGTAAAACTCTTTACTAT
CAACATTTTGAACTGAAAACTTTGATATTTAATCTCTCATATCTGTGATC
TTTAGGTTGGTTTGGCCATTGGAGATATCGAAGCTGTCCGAAACAATGCT
TACATTCGAATGTTACGTGGTCAAGTTCGCATTCTTGAGATCCTTGAACG
CACTTACCCAAAATTTATTTTACGTAGAATTCATACCAAAAATTCTGAAG
TCGAAAAACCGAAACGCTACATGAACAATTGGGAAAGGTAAGGGATAGAT
TGTCTTCATGTATTTATTCTCAATCAGCCCCAATAAGAATGTCTCGTTTG
ATCTTTGTAATGTATGAGAGTTTTCTTATGGTTCCTAACAAGTATTGGGT
TATTCCAGAAATAATCTGTACCCCTATGTTGAGGAGGTGTGGCCCCTAAA
AGTCCAGGGCGGTCCGGTTTTTCAGAGTGAAAAATCCAGGGTCTCACCTT
CCCCGAAAAAGACTCTTCAACATAGGAGGTACAATTTTTTTCTGGAATAG
ACCATATTTTCTGATTTAACACCCTTGGCCTGATGAGGTCCTTTACAAGG
ATGTTGCAATCATTTGATATTTCATCTGCATTTAGACAGAGAGACCTCTT
GATTTTTAATACCCTCGAAGATTGATCATTTTGACCTACAATTATAATAA
TGGTTGGTTTGTAGATTTTAGTTTGAAGTTCTCATAGAATATTTTACAAA
TTATTTGAATCTTCTTTGTTTCTCAGATTCATGGATTGGATTTCGACGTT
GGATTTCGACGCACTCCAAGAAGATCAACAAGATATGACGTCACGTGAAA
TTCGAATGCGAGAACAAATAACCAATCAGGAGAAAGAATTAGAAAAGACA
AAGAGTAAAATGAGAGTGTTGACGTCAGCAATTGAAGAGCAAGCAGAAAT
GATGAGGGTGATGGTTGCTACTATTGATAAAATACCGAAGCATGAACTTA
AAAAGTATATTCACTGAGACTTTTGGTATTTTCCATAGATGTTTTTCATT
TTTTAAAGTCCCTAGACTTTATTGTTTTCTTAATCAACTTGCACGTGTAT
TTATATATAACTAATTTAGTATTTTATTTCACGACTCATTCAATTTCGTT
AAATAATAGAAGGAATTTGATGAGGCAAAATCTAGTATTGCTACTTCGTT
ACTAATCTTTAGATTTTTAGACTAAATGCTTTTTATTGACACTAAAAGAA
CCAATTCTTTCGAAAGCAGTAAAATTCTGTACCTAGTTTCACGTCCAAAA
AGGGCTACAATTAGGAGATTATTTTGTATATTTTTTTGAAATGATTTATA
TTCTTTTGCTGTACCTTATTGGAACTAATTTTCGCGGGATTTAATTTTAG
CGTTTTTCGCGGCAAAATCGCGAAAGTTTTGAGAGTTAAAAACCGCGAAA
ATTAATTCCCGCGAAATACAATTTGTTCAAATTATATCGATAAATTTGAA
AAATCCCTAGGAAAATGAAAGAAATTTGTCCAAAAAGAGGCAAAACTGCG
AAAATTAAAACCTACGAAAATTCCAGAATGAAAAAACCCGCGAAATGCAA
TTTTTCGGACATTTTTATTCGACCGCGAAATTAGTTCCAATAAGGTAATT
TAATTTAAACATAGAACACTATTTTTCGTTTTGTAATTTTTGTATGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062412-exon-scaffold_364-1575043694:220158..220197 | TCONS_00062412-exon-scaffold_364-1575043694:220158..220197 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1575043694:219361..219542 | TCONS_00062412-exon-scaffold_364-1575043694:219361..219542 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1575043694:217948..218871 | TCONS_00062412-exon-scaffold_364-1575043694:217948..218871 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1510915933:220158..220197 | TCONS_00062412-exon-scaffold_364-1510915933:220158..220197 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1510915933:219361..219542 | TCONS_00062412-exon-scaffold_364-1510915933:219361..219542 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1510915933:217948..218871 | TCONS_00062412-exon-scaffold_364-1510915933:217948..218871 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1491911889:220158..220197 | TCONS_00062412-exon-scaffold_364-1491911889:220158..220197 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1491911889:219361..219542 | TCONS_00062412-exon-scaffold_364-1491911889:219361..219542 | Clytia hemisphaerica | exon |
| TCONS_00062412-exon-scaffold_364-1491911889:217948..218871 | TCONS_00062412-exon-scaffold_364-1491911889:217948..218871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:217948..220197 - |
Blast
The following BLAST results are available for this feature:
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