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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062417 ID=TCONS_00062417|Name=TCONS_00062417|organism=Clytia hemisphaerica|type=transcript|length=1535bpRun BLAST on NCBI transcript from alignment at scaffold_364:243017..252225- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062417 ID=TCONS_00062417|Name=TCONS_00062417|organism=Clytia hemisphaerica|type=transcript|length=9209bp|location=Sequence derived from alignment at scaffold_364:243017..252225- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062417 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 216.083 bits (549), Expect = 1.096e-59 Identity = 157/493 (31.85%), Postives = 245/493 (49.70%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAKEVASKYDQPEEG-------TFAKRRLV-----------NSQTRECDTPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQV 1433
L+ GA + K+ G + + A + +++ V LL++ + + D+ + + PLH A G V K LLD GA+ ++ G P+H A N+ ++ LL K AS E G +F + N + +TPLH+AA+ G+ EVAK L+ A VNA+ +QTPLH A+ GH +++KLL+ + N T LH+AA+ G +E LLE A C K FTPL +A G+ + + L+++ A LH+A+ +N D + LL P ++P TPLH AAK +E LL+ + Q TP+HLAA+ G V AL + N ++G +PLHL A G ++VLI+ G + + +TPL A+ +G+ K+V LL++ A V+A+ K G +PLH A+ G+TD +++LL GA ++ DG L +A G +
Sbjct: 292 LDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLD-HLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL--PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 780 HSP 2 Score: 213.001 bits (541), Expect = 1.110e-58 Identity = 155/505 (30.69%), Postives = 243/505 (48.12%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAK----------------EVASK--YDQPEEGTFAKRRLVNSQTRECDTPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEH--TPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQVDACMALIQHK 1463
L RGA V G T L A RRGN+ +V LL+++ ++ ++ PLH A G + + LLD GA I A+ K G PIH AA ++ + LL + VA+ + + + K NS+ TPLHIA + + V + L+ GA ++A T++ TPLH+AS GHL I+K L+ + N ++ +T LH+AA+ G EV K LL+ A+++ KD+ TPL A G +V+ L++ A+ + LH+A E + +T++ L A + K+ TPLH AAK G + E+LLE++A + TP+H+A + V L +P S +N G +PLH+AA + + L++ G ++ TPL AA GH ++V +LL A + +K G TPLH + G+ +L+ G + T G L +A G + L+QH+
Sbjct: 226 LNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRG-AQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN---GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 724 HSP 3 Score: 181.8 bits (460), Expect = 3.118e-48 Identity = 143/512 (27.93%), Postives = 247/512 (48.24%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAKEVASKYDQPEEGTFAKRRLVNSQTRECDTPLHIAAQGGYEEVAKTLIALGAD---------VNARTD--------------------TNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQVDACMALIQ 1457
L G + + G L A + G++++V L+ K +++ LH A + G+++VV+ L++ GA ++A+ ++G P++ AA +N+ ++ L + A++ N T + TPL +A Q G+E V LI G + AR D T TPLH+A+ +L++ +LL+ + +N + T LH+A++ G + + + LL+ GA+++ KD TPL A G I + L+D GA + K + +H+A + D+ D + LL A+ I+ + TPLH AA G+ ++LL+K A + TP+H+A + R + L + T S++ E+G +PLH+A+ G L++ GA + + TPL AA GH +V LL+N A V+A+ K TPLH A+ G+T+ + +LL+ A + G L +A G V+ +AL++
Sbjct: 32 LRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEI-ILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQ---------------NVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAE--IDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLK-TGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 524 HSP 4 Score: 142.895 bits (359), Expect = 1.223e-35 Identity = 104/350 (29.71%), Postives = 176/350 (50.29%), Query Frame = 3
Query: 387 RECD--TPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQ 1430
RE D T AA+ G + A + G D+N LHLAS GH+ ++ L+ + + TALH+AA G+ EV ++L+ +GA ++ + FTPL +A + E+V+FL++ GA+ V L +A+++ +++ + L N K + P LH AA+ + +LL+ + + D+ TP+H+AA + + V L + SVN+ + G +PLH+A+ G +L++ GA+ ++ TPL AA +GH ++ ILL++ AP+ A+ K G +P+H A+ + DC+ +LL AEI D L +A G
Sbjct: 8 READAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLP------ALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAA-HYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGH 350 HSP 5 Score: 126.331 bits (316), Expect = 2.276e-30 Identity = 97/315 (30.79%), Postives = 144/315 (45.71%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAKEVASKYDQPEEGTFAKRRLVNSQTRECDTPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEML 953
LE A + + G T L A R G++E V L+EK + PLH A GK V + LL+ A +A K G P+H A NN ++ LL S + G TPLHIAA+ EVA++L+ G NA + TPLHLA+ GH ++ LL+ ++ N + T LH+ AQ G + V L++ G +D + +TPL +A G ++V+FL+ A V K + LH A ++ + D + LL A N + TPL A ++G I ++L
Sbjct: 490 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY---------------TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP--NEVSSDGTTPLAIAKRLGYISVTDVL 786 HSP 6 Score: 104.76 bits (260), Expect = 2.266e-23 Identity = 84/298 (28.19%), Postives = 147/298 (49.33%), Query Frame = 3
Query: 570 INAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTP-IHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQVDACMALIQH 1460
IN + + LH+A++ G +++ +LL L+ K T L +A GQDE+V+ L++ GA+V + L++A +E++ + + L A + N ++ TPL A + G+ + L+ T + R P +H+AA N TR L ++ P + +TG +PLH+AA + +L+ GA + TPL A+ G+ +V +LL+ A ++ + K TPLH A+ NG+ ILLD GA I ++G + + +A + +D L+Q+
Sbjct: 38 INTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQ--NVATEDGFTPLAVALQQGHENVVAHLINYG-----TKGKVRLPALHIAARNDDTRTAAVLLQNDPNP-DVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQY 327 The following BLAST results are available for this feature:
BLAST of TCONS_00062417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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