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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062418 ID=TCONS_00062418|Name=TCONS_00062418|organism=Clytia hemisphaerica|type=transcript|length=2367bpRun BLAST on NCBI protein sequence of TCONS_00062418-protein >TCONS_00062418-protein ID=TCONS_00062418-protein|Name=TCONS_00062418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp FXLERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDRun BLAST on NCBI transcript from alignment at scaffold_364:243017..252225- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062418 ID=TCONS_00062418|Name=TCONS_00062418|organism=Clytia hemisphaerica|type=transcript|length=9209bp|location=Sequence derived from alignment at scaffold_364:243017..252225- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_364:243017..252225- >TCONS_00062418 ID=TCONS_00062418|Name=TCONS_00062418|organism=Clytia hemisphaerica|type=CDS|length=20010bp|location=Sequence derived from alignment at scaffold_364:243017..252225- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062418 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 213.386 bits (542), Expect = 5.873e-57 Identity = 165/566 (29.15%), Postives = 262/566 (46.29%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAK----------------EVASK--YDQPEEGTFAKRRLVNSQTRECDTPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEH--TPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQVDACMALIQHKRWKEVLNTQDSNGTHPMEKLIAVAPTVAEIVLNKCIHQTQVVRDDGRTATKVTYNFEFLDI 1646
L RGA V G T L A RRGN+ +V LL+++ ++ ++ PLH A G + + LLD GA I A+ K G PIH AA ++ + LL + VA+ + + + K NS+ TPLHIA + + V + L+ GA ++A T++ TPLH+AS GHL I+K L+ + N ++ +T LH+AA+ G EV K LL+ A+++ KD+ TPL A G +V+ L++ A+ + LH+A E + +T++ L A + K+ TPLH AAK G + E+LLE++A + TP+H+A + V L +P S +N G +PLH+AA + + L++ G ++ TPL AA GH ++V +LL A + +K G TPLH + G+ +L+ G + T G L +A G + L+QH + +N + G P+ + T +L K V DG T + ++ +
Sbjct: 226 LNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRG-AQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN---GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 782 HSP 2 Score: 187.193 bits (474), Expect = 1.004e-48 Identity = 157/575 (27.30%), Postives = 271/575 (47.13%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAKEVASKYDQPEEGTFAKRRLVNSQTRECDTPLHIAAQGGYEEVAKTLIALGAD---------VNARTD--------------------TNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQVDACMALIQHKRWKEVLNTQDSNGTHPMEKLIAVAPTVAEIVLNKCIHQTQVVRDDGRTATKVTYNFEFLDI 1646
L G + + G L A + G++++V L+ K +++ LH A + G+++VV+ L++ GA ++A+ ++G P++ AA +N+ ++ L + A++ N T + TPL +A Q G+E V LI G + AR D T TPLH+A+ +L++ +LL+ + +N + T LH+A++ G + + + LL+ GA+++ KD TPL A G I + L+D GA + K + +H+A + D+ D + LL A+ I+ + TPLH AA G+ ++LL+K A + TP+H+A + R + L + T S++ E+G +PLH+A+ G L++ GA + + TPL AA GH +V LL+N A V+A+ K TPLH A+ G+T+ + +LL+ A + G L +A G V+ +AL++ + + + + H K V VAE++L + H + +G T V + LDI
Sbjct: 32 LRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEI-ILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQ---------------NVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAE--IDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLK-TGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV--RVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDI 584 HSP 3 Score: 184.882 bits (468), Expect = 5.555e-48 Identity = 150/512 (29.30%), Postives = 242/512 (47.27%), Query Frame = 3
Query: 9 LERGAQVGIKSDYGTTSLAFACRRGNIELVDLLMEKNPGLVDVGDNSDVMPLHAAMMGGKEDVVKALLDMGARIDAEDKEGEQPIHYAAADNNEALIALLAKEVASKYDQPEEG-------TFAKRRLV-----------NSQTRECDTPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFN-------------TP------------AKRLI------NAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGN---TDCMSILLDKGAEISKTDE 1388
L+ GA + K+ G + + A + +++ V LL++ + + D+ + + PLH A G V K LLD GA+ ++ G P+H A N+ ++ LL K AS E G +F + N + +TPLH+AA+ G+ EVAK L+ A VNA+ +QTPLH A+ GH +++KLL+ + N T LH+AA+ G +E LLE A C K FTPL +A G+ + + L+++ A LH+A+ +N D + LL TP A+ L+ NA + TPLH AA+ G+ E + +LL K A+ +L + TP+HL A+ G L +H V+ G +PLH+A+ G K L++ A+ +++ + ++PL AA GH +V +LL+N A + G+TPL A G TD + ++ D+ + + +D+
Sbjct: 292 LDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLD-HLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 801 HSP 4 Score: 144.821 bits (364), Expect = 3.236e-35 Identity = 112/385 (29.09%), Postives = 188/385 (48.83%), Query Frame = 3
Query: 387 RECD--TPLHIAAQGGYEEVAKTLIALGADVNARTDTNQTPLHLASIAGHLSILKLLIMYKSKINAKDLDQQTALHVAAQFGRLEVCKQLLEFGARLDCNDKDNFTPLMLAVWKGQDEIVQFLIDKGASVYVKDLGDKNVLHLAIEEDNDDTLILLFNTPAKRLINAPDKEFKTPLHYAAKVGNIEAIEMLLEKNADVDLTDNQERTPIHLAAENGQTRCVTALGEHTPGSVNYNEETGKSPLHLAAINGFKKTSNVLIEMGAETSSRDDVNWTPLDYAALHGHPKVVVILLENDAPVDAQDKKGSTPLHHASANGNTDCMSILLDKGAEISKTDEDGKNCLDLAVENGQVDACMALIQHKRWKEVL-------NTQDSNGTHPM 1514
RE D T AA+ G + A + G D+N LHLAS GH+ ++ L+ + + TALH+AA G+ EV ++L+ +GA ++ + FTPL +A + E+V+FL++ GA+ V L +A+++ +++ + L N K + P LH AA+ + +LL+ + + D+ TP+H+AA + + V L + SVN+ + G +PLH+A+ G +L++ GA+ ++ TPL AA +GH ++ ILL++ AP+ A+ K G +P+H A+ + DC+ +LL AEI D L +A G H R +VL N++ NG P+
Sbjct: 8 READAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLP------ALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAA-HYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCG----------HHRVAKVLLDKGAKPNSRALNGFTPL 375 The following BLAST results are available for this feature:
BLAST of TCONS_00062418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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