TCONS_00062436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062436
Unique NameTCONS_00062436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062436 ID=TCONS_00062436|Name=TCONS_00062436|organism=Clytia hemisphaerica|type=transcript|length=1902bp
gttagattaaaaaaaacaatttgaaaaaaaaatgaaagaataatTGCTAT
GGTGATGAGCAGTATTGGTGGAGGATGTTGGTCACAGACACTGGTTTACT
CTTCGttatcactttttggatttgtcTCTTTTTCATAAACTTATTGTTAA
AGagTTCTCAACGTTATGGATTCTTGTACACTGAGACCTTGGTATCCTTT
GGTGTAACATTCTCATTATGCCAGATCCGTTGGCAAACATCCCTCTTCAA
TAAACTATTCAGCAAGATCGGCCGGTACAACCCAAAACTGTCGCTACTAT
GGTTTACACTTGGAGCTGTATTTGCCGTCATTTCTATGGTCTCGTCTGTG
GTCATTTTGACGTTGATGCTGTATCGATCTGTCAAAGATACCAAAGCTGA
TAAACTTCTTCAACCGGTGATGCCGGGAATGAATCTTCCATGGAATCAAG
TAGCCTATTATTTGACGACTCTCATCATCTCTGGAACTTTTCATGAAGTA
GGACACGCCATCGCTGCAGTCAGAGAGAACGTGCGAGTATTGAGTTTCGG
AGTATTCGTTCTATTCATGTACCCAGGAGCGTTTGTCGAGTTACACACGG
ATCAACTCGACATTATTACACCCTTTCGAAGACTGAGGATTTTTTCAGCG
GGTGTGTGGCACAACTTTATTCTAGCGGTTGTAGCGTACATACTTTCTAC
TAGCCTGCCGATGTGGCTGTCTCCTCTCTACACAATGGGTGACGGTGTTT
TGGTAACTCACGTTGCTCAGCAATCATCAATTGTCAACCGACTACCAGTC
GGTGACGTCATAACTTATATCAATAATTGTCCGGTGCGAAAGACCGAAGA
CTGGTACCTCTGTTTACAAAAGATACAAACAAATCCAGTGGATGGATATT
GTGGACCATCCAGCTATACTAAAACACACAACATGTCACTACCCACGCTA
GTAGAAAACTTTGGGGAACCTGATTGTTGTAATGATACAAGTGCGTATCG
ATTTTGTTTTTGGTATAAGCGACACCCGAAAGCAATGTCTTTaagtcaaa
aacttttcaatgcCAATATATTAGTTCGTACCTCTTTAGAATATAATTCC
AAATTCACGGAACATGCTTGTTTACCAGCGCGTCATATTTTATCGGGGAA
AATGTGCAAGACGAATTTAGATTGCGCTTTGAAGAATGCTACGGAGTTCA
GTTTATGTCACATACCGTTAACAAAAAACACGACAAGGGTGATACGAATC
GGTCATAAGAAAGGGCAGGAAGTTTTATTTGTTGGTGAGCCCAGAGAGCT
GAGTTCCACAATCATGCTCTCGGACTACATACCAATTTATAATACACCGC
TTCTGAATCTACCGAAACACATTGAAAGTATGTGTTTGTATTTAATATCC
ATTTCAGCAGCTTTGGCACTTTTGAACATGGTACCTTGTTTTTATCTGGA
TGGTCACCACACTTTGGAGATTCTTCTGGAGATACTGTTACCTCACCAGC
ATAAATTAAGATTGCAGATTCAAACGGTGATTTTGATGCTTGGATCTTCA
TTGTTGTTGGTGAATGTACTTATTGCCTTATCCACTTTATTCTAGTTTTG
AGATTATGATGTTTAAACGGTTTTTAGCAGTTGAAACGGGGATACTTTTT
ATTGTGACACTCTCGTCATTTTTTTATCGacacaaatttttaattttaga
tttagaatATTGAAAACATCGCTTGAGTTACAATTTTTCACAAGTTATAG
TTATATAATTTTAAATAGTTACGCGGAGAATCATTTCAccatgtttaatt
ttttttagaatttcgtTTTATCTTTAATTGTACATaagatttttggtatt
tttacatcaaataGCTCGAAAACACTGCAAATATGGAAATATTGGTCAGg
at
Run BLAST on NCBI

protein sequence of TCONS_00062436-protein

>TCONS_00062436-protein ID=TCONS_00062436-protein|Name=TCONS_00062436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MLVTDTGLLFVITFWICLFFINLLLKSSQRYGFLYTETLVSFGVTFSLCQ
IRWQTSLFNKLFSKIGRYNPKLSLLWFTLGAVFAVISMVSSVVILTLMLY
RSVKDTKADKLLQPVMPGMNLPWNQVAYYLTTLIISGTFHEVGHAIAAVR
ENVRVLSFGVFVLFMYPGAFVELHTDQLDIITPFRRLRIFSAGVWHNFIL
AVVAYILSTSLPMWLSPLYTMGDGVLVTHVAQQSSIVNRLPVGDVITYIN
NCPVRKTEDWYLCLQKIQTNPVDGYCGPSSYTKTHNMSLPTLVENFGEPD
CCNDTSAYRFCFWYKRHPKAMSLSQKLFNANILVRTSLEYNSKFTEHACL
PARHILSGKMCKTNLDCALKNATEFSLCHIPLTKNTTRVIRIGHKKGQEV
LFVGEPRELSSTIMLSDYIPIYNTPLLNLPKHIESMCLYLISISAALALL
NMVPCFYLDGHHTLEILLEILLPHQHKLRLQIQTVILMLGSSLLLVNVLI
ALSTLF
Run BLAST on NCBI

transcript from alignment at scaffold_364:329321..333103-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062436 ID=TCONS_00062436|Name=TCONS_00062436|organism=Clytia hemisphaerica|type=transcript|length=3783bp|location=Sequence derived from alignment at scaffold_364:329321..333103- (Clytia hemisphaerica)
GTTAGATTAAAAAAAACAATTTGAAAAAAAAATGAAAGAATAATTGCTAT
GGTGATGAGCAGTATTGGTGGAGGATGTTGGTCACAGACACTGGTTTACT
CTTCGTTATCACTTTTTGGATTTGTCTCTTTTTCATAAACTTATTGTTAA
AGGTTTGTAAACACATTTGCTGTCCTCTCTATCTTATAGAGGTCTTCAAA
GGTTTGGCAAGATTTAACGTCGTGGGAAATCAGCTATTTTAAGAAGGTGA
AAACCTCTATAATTCGATACTGCCCAGTCTTTAAAAATTTTCAACAGATG
TCATTCTTATCCATATCGAGAAAGAGAGTGTATGATTTTCACATTGAAAT
TTGGCGACCAGCTCTATTACAGTCTCATGGTCACCCTATTTATTACGAAG
GTCTGTTCCATTCGAACATTTCTTTTGAACAATTTCCATCAATAATCTTC
TATACTAAATGAGTTTATGAAAAATGTCTGTAACGCTAGCCCAGTAACAT
ATTAAAGTTTCTAAAATTTGAACGCCGCGGCTGGAAAACCTATCCTCCTT
CGATACAAAAAGTCTCGCGCTAAGTTTGACAAGCGTAGAAAACTCGGATT
AGANNNNGCATTTCATTGAACACAAACTTCCGTTATCTTAAAAAGACATA
TCATCGAGGCTTACAGACACAAAATTTTGACTAATGTAGAAAGTTTAGAA
GTATAACTTTTATTATTGTATTCGGCATTTTAAGCCAAAACGATGTCAGG
AATTAAACCACATTATAGTATTTTAAAAGCTTTTGATGTGCAAGCAAAAC
CGTTAACCGGCGTTTGCGACGACGGGAACCGTCTAGTCTTTACTATTGAT
TTTGTCGTATATATTTTTTCTTTGGATTGATTTGCTAGTTTTGGGTTCAG
TTGTGAAACATTTTCTTTTGGAAAGGTAGGTTTTGGCCTTTATGGACAGC
TCTGTATTGCTTTCTCATGTGGTTTAAGCAAATGAGGTCATTATTACAAA
TAATAGGCTTCGTGGTGAAAGATTGAAAATTGTTTATGACTAAACCTTAT
GCAATTTTTCTTTAGAGTTCTCAACGTTATGGATTCTTGTACACTGAGAC
CTTGGTATCCTTTGGTGTAACATTCTCATTATGCCAGATCCGTTGGCAAA
CATCCCTCTTCAATAAACTATTCAGCAAGATCGGCCGGTACAACCCAAAA
CTGTCGCTACTATGGTTTACACTTGGAGCTGTATTTGCCGTCATTTCTAT
GGTCTCGTCTGTGGTCATTTTGACGTTGATGCTGTATCGATCTGTCAAAG
ATACCAAAGCTGATAAACTTCTTCAACCGGTGGTAAGATGAGATTCATTT
GATGAATGTGCTTTCTCCTTCGGTGATAAGAATAGCGACGGAGACGGTTA
GCTTCTGTTTTGTCTAGATCCTGATCAACTGAGGACGACGGTAACTAAGC
ACTTTTACCGTCCTCTATTTTGCTATTGTTCCAAATCGCTTCAGCTACTC
CGCTGTCTTCAAAACTGCAAATATATAAACTCGGTAATATGGACGCGATA
GTAAGGAATGAAGATGACTTGAACAGCAAAACAAAATTTTACAATGACAA
CTACTATTTTGCAACTGTGATTGATTTCTTTTCAATTCTGAATCGTCATC
ACTGAAAATCTCTTTATTTTCAGATGCCGGGAATGAATCTTCCATGGAAT
CAAGTAGCCTATTATTTGACGACTCTCATCATCTCTGGAACTTTTCATGA
AGTAGGACACGCCATCGCTGCAGTCAGGTATTATTCTCAAAACCAGTCAG
TTGGTTTATTGAGTTCTATGTGTGATAAAGTCCATCTCTTTTCTAAATAA
GCTGGTCACGTGTACAAAGCACACTCTTCTCGGACACATTAACAAACTGA
AAAATTAATAGAAAAATTAATAGAAAAATATATCAGACTTACAATATAAC
ATATTAAAGGTTTTCTTTTTGCATAACTCTTCCCGTTTCATATCAGACAC
ATGTTTCATATCAGAACAGTGTCTGCCTATTGTTATACTGTGCTGATAAG
CAAAAAAAAGAGTTTCGGTTTTCCTCTTTCTGACCAAGCTTGCTCCGCAT
CCGTGTCAATTTAATATTAAAAAGCTTGTAAAAATCTAAACTGATGAGTA
AGCAAACAAAAAACCTTTAACTTTTAACTATAAATTTGGAAGTAAGAGTG
CTGATGCTTCCTAAATATTGATTTTGCTTGAGATATCTTGTCAGTTGTAT
TCTTGAAACTGGTATACTTTTATGTGTTTCGAAAAAAGTGTCTATACGAG
ATGGAGATGTATGTTATCACTTCCATTATTTTGTTAGTGTTAACTCTTCA
CGTTAGTTTATTTTGAAGAAAGGAAGATAACATTAATTCTTTTTCTTCAT
ATAGAGAGAACGTGCGAGTATTGAGTTTCGGAGTATTCGTTCTATTCATG
TACCCAGGAGCGTTTGTCGAGTTACACACGGATCAACTCGACATTATTAC
ACCCTTTCGAAGACTGAGGATTTTTTCAGCGGGTGTGTGGCACAACTTTA
TTCTAGCGGTTGTAGCGTACATACTTTCTACTAGCCTGCCGATGTGGCTG
TCTCCTCTCTACACAATGGGTGACGGTGTTTTGGTAACTCACGTTGCTCA
GCAATCATCAATTGTCAACCGACTACCAGTCGGTGACGTCATAACTTATA
TCAATAATTGTCCGGTGCGAAAGACCGAAGACTGGTACCTCTGTTTACAA
AAGATACAAACAAATCCAGTGGATGGATATTGTGGACCATCCAGCTATAC
TAAAACACACAACATGTCACTACCCACGCTAGTAGAAAACTTTGGGGAAC
CTGATTGTTGTAATGATACAAGTGCGTATCGATTTTGTTTTTGGTATAAG
CGACACCCGAAAGCAATGTCTTTAAGTCAAAAACTTTTCAATGCCAATAT
ATTAGTTCGTACCTCTTTAGAATATAATTCCAAATTCACGGAACATGCTT
GTTTACCAGCGCGTCATATTTTATCGGGGAAAATGTGCAAGACGAATTTA
GATTGCGCTTTGAAGAATGCTACGGAGTTCAGTTTATGTCACATACCGTT
AACAAAAAACACGACAAGGGTGATACGAATCGGTCATAAGAAAGGGCAGG
AAGTTTTATTTGTTGGTGAGCCCAGAGAGCTGAGTTCCACAATCATGCTC
TCGGACTACATACCAATTTATAATACACCGCTTCTGAATCTACCGAAACA
CATTGAAAGTATGTGTTTGTATTTAATATCCATTTCAGCAGCTTTGGCAC
TTTTGAACATGGTACCTTGTTTTTATCTGGATGGTCACCACACTTTGGAG
ATTCTTCTGGAGATACTGTTACCTCACCAGCATAAATTAAGATTGCAGAT
TCAAACGGTGATTTTGATGCTTGGATCTTCATTGTTGTTGGTGAATGTAC
TTATTGCCTTATCCACTTTATTCTAGTTTTGAGATTATGATGTTTAAACG
GTTTTTAGCAGTTGAAACGGGGATACTTTTTATTGTGACACTCTCGTCAT
TTTTTTATCGACACAAATTTTTAATTTTAGATTTAGAATATTGAAAACAT
CGCTTGAGTTACAATTTTTCACAAGTTATAGTTATATAATTTTAAATAGT
TACGCGGAGAATCATTTCACCATGTTTAATTTTTTTTAGAATTTCGTTTT
ATCTTTAATTGTACATAAGATTTTTGGTATTTTTACATCAAATAGCTCGA
AAACACTGCAAATATGGAAATATTGGTCAGGAT

Coding sequence (CDS) from alignment at scaffold_364:329321..333103-

>TCONS_00062436 ID=TCONS_00062436|Name=TCONS_00062436|organism=Clytia hemisphaerica|type=CDS|length=6084bp|location=Sequence derived from alignment at scaffold_364:329321..333103- (Clytia hemisphaerica)
AGAGAACGTGCGAGTATTGAGTTTCGGAGTATTCGTTCTATTCATGTACC
CAGGAGCGTTTGTCGAGTTACACACGGATCAACTCGACATTATTACACCC
TTTCGAAGACTGAGGATTTTTTCAGCGGGTGTGTGGCACAACTTTATTCT
AGCGGTTGTAGCGTACATACTTTCTACTAGCCTGCCGATGTGGCTGTCTC
CTCTCTACACAATGGGTGACGGTGTTTTGGTAACTCACGTTGCTCAGCAA
TCATCAATTGTCAACCGACTACCAGTCGGTGACGTCATAACTTATATCAA
TAATTGTCCGGTGCGAAAGACCGAAGACTGGTACCTCTGTTTACAAAAGA
TACAAACAAATCCAGTGGATGGATATTGTGGACCATCCAGCTATACTAAA
ACACACAACATGTCACTACCCACGCTAGTAGAAAACTTTGGGGAACCTGA
TTGTTGTAATGATACAAGTGCGTATCGATTTTGTTTTTGGTATAAGCGAC
ACCCGAAAGCAATGTCTTTAAGTCAAAAACTTTTCAATGCCAATATATTA
GTTCGTACCTCTTTAGAATATAATTCCAAATTCACGGAACATGCTTGTTT
ACCAGCGCGTCATATTTTATCGGGGAAAATGTGCAAGACGAATTTAGATT
GCGCTTTGAAGAATGCTACGGAGTTCAGTTTATGTCACATACCGTTAACA
AAAAACACGACAAGGGTGATACGAATCGGTCATAAGAAAGGGCAGGAAGT
TTTATTTGTTGGTGAGCCCAGAGAGCTGAGTTCCACAATCATGCTCTCGG
ACTACATACCAATTTATAATACACCGCTTCTGAATCTACCGAAACACATT
GAAAGTATGTGTTTGTATTTAATATCCATTTCAGCAGCTTTGGCACTTTT
GAACATGGTACCTTGTTTTTATCTGGATGGTCACCACACTTTGGAGATTC
TTCTGGAGATACTGTTACCTCACCAGCATAAATTAAGATTGCAGATTCAA
ACGGTGATTTTGATGCTTGGATCTTCATTGTTGTTGGTGAATGTACTTAT
TGCCTTATCCACTTTATTCTAGATGCCGGGAATGAATCTTCCATGGAATC
AAGTAGCCTATTATTTGACGACTCTCATCATCTCTGGAACTTTTCATGAA
GTAGGACACGCCATCGCTGCAGTCAGAGTTCTCAACGTTATGGATTCTTG
TACACTGAGACCTTGGTATCCTTTGGTGTAACATTCTCATTATGCCAGAT
CCGTTGGCAAACATCCCTCTTCAATAAACTATTCAGCAAGATCGGCCGGT
ACAACCCAAAACTGTCGCTACTATGGTTTACACTTGGAGCTGTATTTGCC
GTCATTTCTATGGTCTCGTCTGTGGTCATTTTGACGTTGATGCTGTATCG
ATCTGTCAAAGATACCAAAGCTGATAAACTTCTTCAACCGGTGATGTTGG
TCACAGACACTGGTTTACTCTTCGTTATCACTTTTTGGATTTGTCTCTTT
TTCATAAACTTATTGTTAAAGAGAGAACGTGCGAGTATTGAGTTTCGGAG
TATTCGTTCTATTCATGTACCCAGGAGCGTTTGTCGAGTTACACACGGAT
CAACTCGACATTATTACACCCTTTCGAAGACTGAGGATTTTTTCAGCGGG
TGTGTGGCACAACTTTATTCTAGCGGTTGTAGCGTACATACTTTCTACTA
GCCTGCCGATGTGGCTGTCTCCTCTCTACACAATGGGTGACGGTGTTTTG
GTAACTCACGTTGCTCAGCAATCATCAATTGTCAACCGACTACCAGTCGG
TGACGTCATAACTTATATCAATAATTGTCCGGTGCGAAAGACCGAAGACT
GGTACCTCTGTTTACAAAAGATACAAACAAATCCAGTGGATGGATATTGT
GGACCATCCAGCTATACTAAAACACACAACATGTCACTACCCACGCTAGT
AGAAAACTTTGGGGAACCTGATTGTTGTAATGATACAAGTGCGTATCGAT
TTTGTTTTTGGTATAAGCGACACCCGAAAGCAATGTCTTTAAGTCAAAAA
CTTTTCAATGCCAATATATTAGTTCGTACCTCTTTAGAATATAATTCCAA
ATTCACGGAACATGCTTGTTTACCAGCGCGTCATATTTTATCGGGGAAAA
TGTGCAAGACGAATTTAGATTGCGCTTTGAAGAATGCTACGGAGTTCAGT
TTATGTCACATACCGTTAACAAAAAACACGACAAGGGTGATACGAATCGG
TCATAAGAAAGGGCAGGAAGTTTTATTTGTTGGTGAGCCCAGAGAGCTGA
GTTCCACAATCATGCTCTCGGACTACATACCAATTTATAATACACCGCTT
CTGAATCTACCGAAACACATTGAAAGTATGTGTTTGTATTTAATATCCAT
TTCAGCAGCTTTGGCACTTTTGAACATGGTACCTTGTTTTTATCTGGATG
GTCACCACACTTTGGAGATTCTTCTGGAGATACTGTTACCTCACCAGCAT
AAATTAAGATTGCAGATTCAAACGGTGATTTTGATGCTTGGATCTTCATT
GTTGTTGGTGAATGTACTTATTGCCTTATCCACTTTATTCTAGATGCCGG
GAATGAATCTTCCATGGAATCAAGTAGCCTATTATTTGACGACTCTCATC
ATCTCTGGAACTTTTCATGAAGTAGGACACGCCATCGCTGCAGTCAGAGT
TCTCAACGTTATGGATTCTTGTACACTGAGACCTTGGTATCCTTTGGTGT
AACATTCTCATTATGCCAGATCCGTTGGCAAACATCCCTCTTCAATAAAC
TATTCAGCAAGATCGGCCGGTACAACCCAAAACTGTCGCTACTATGGTTT
ACACTTGGAGCTGTATTTGCCGTCATTTCTATGGTCTCGTCTGTGGTCAT
TTTGACGTTGATGCTGTATCGATCTGTCAAAGATACCAAAGCTGATAAAC
TTCTTCAACCGGTGATGTTGGTCACAGACACTGGTTTACTCTTCGTTATC
ACTTTTTGGATTTGTCTCTTTTTCATAAACTTATTGTTAAAGAGAGAACG
TGCGAGTATTGAGTTTCGGAGTATTCGTTCTATTCATGTACCCAGGAGCG
TTTGTCGAGTTACACACGGATCAACTCGACATTATTACACCCTTTCGAAG
ACTGAGGATTTTTTCAGCGGGTGTGTGGCACAACTTTATTCTAGCGGTTG
TAGCGTACATACTTTCTACTAGCCTGCCGATGTGGCTGTCTCCTCTCTAC
ACAATGGGTGACGGTGTTTTGGTAACTCACGTTGCTCAGCAATCATCAAT
TGTCAACCGACTACCAGTCGGTGACGTCATAACTTATATCAATAATTGTC
CGGTGCGAAAGACCGAAGACTGGTACCTCTGTTTACAAAAGATACAAACA
AATCCAGTGGATGGATATTGTGGACCATCCAGCTATACTAAAACACACAA
CATGTCACTACCCACGCTAGTAGAAAACTTTGGGGAACCTGATTGTTGTA
ATGATACAAGTGCGTATCGATTTTGTTTTTGGTATAAGCGACACCCGAAA
GCAATGTCTTTAAGTCAAAAACTTTTCAATGCCAATATATTAGTTCGTAC
CTCTTTAGAATATAATTCCAAATTCACGGAACATGCTTGTTTACCAGCGC
GTCATATTTTATCGGGGAAAATGTGCAAGACGAATTTAGATTGCGCTTTG
AAGAATGCTACGGAGTTCAGTTTATGTCACATACCGTTAACAAAAAACAC
GACAAGGGTGATACGAATCGGTCATAAGAAAGGGCAGGAAGTTTTATTTG
TTGGTGAGCCCAGAGAGCTGAGTTCCACAATCATGCTCTCGGACTACATA
CCAATTTATAATACACCGCTTCTGAATCTACCGAAACACATTGAAAGTAT
GTGTTTGTATTTAATATCCATTTCAGCAGCTTTGGCACTTTTGAACATGG
TACCTTGTTTTTATCTGGATGGTCACCACACTTTGGAGATTCTTCTGGAG
ATACTGTTACCTCACCAGCATAAATTAAGATTGCAGATTCAAACGGTGAT
TTTGATGCTTGGATCTTCATTGTTGTTGGTGAATGTACTTATTGCCTTAT
CCACTTTATTCTAGATGCCGGGAATGAATCTTCCATGGAATCAAGTAGCC
TATTATTTGACGACTCTCATCATCTCTGGAACTTTTCATGAAGTAGGACA
CGCCATCGCTGCAGTCAGAGTTCTCAACGTTATGGATTCTTGTACACTGA
GACCTTGGTATCCTTTGGTGTAACATTCTCATTATGCCAGATCCGTTGGC
AAACATCCCTCTTCAATAAACTATTCAGCAAGATCGGCCGGTACAACCCA
AAACTGTCGCTACTATGGTTTACACTTGGAGCTGTATTTGCCGTCATTTC
TATGGTCTCGTCTGTGGTCATTTTGACGTTGATGCTGTATCGATCTGTCA
AAGATACCAAAGCTGATAAACTTCTTCAACCGGTGATGTTGGTCACAGAC
ACTGGTTTACTCTTCGTTATCACTTTTTGGATTTGTCTCTTTTTCATAAA
CTTATTGTTAAAGAGAGAACGTGCGAGTATTGAGTTTCGGAGTATTCGTT
CTATTCATGTACCCAGGAGCGTTTGTCGAGTTACACACGGATCAACTCGA
CATTATTACACCCTTTCGAAGACTGAGGATTTTTTCAGCGGGTGTGTGGC
ACAACTTTATTCTAGCGGTTGTAGCGTACATACTTTCTACTAGCCTGCCG
ATGTGGCTGTCTCCTCTCTACACAATGGGTGACGGTGTTTTGGTAACTCA
CGTTGCTCAGCAATCATCAATTGTCAACCGACTACCAGTCGGTGACGTCA
TAACTTATATCAATAATTGTCCGGTGCGAAAGACCGAAGACTGGTACCTC
TGTTTACAAAAGATACAAACAAATCCAGTGGATGGATATTGTGGACCATC
CAGCTATACTAAAACACACAACATGTCACTACCCACGCTAGTAGAAAACT
TTGGGGAACCTGATTGTTGTAATGATACAAGTGCGTATCGATTTTGTTTT
TGGTATAAGCGACACCCGAAAGCAATGTCTTTAAGTCAAAAACTTTTCAA
TGCCAATATATTAGTTCGTACCTCTTTAGAATATAATTCCAAATTCACGG
AACATGCTTGTTTACCAGCGCGTCATATTTTATCGGGGAAAATGTGCAAG
ACGAATTTAGATTGCGCTTTGAAGAATGCTACGGAGTTCAGTTTATGTCA
CATACCGTTAACAAAAAACACGACAAGGGTGATACGAATCGGTCATAAGA
AAGGGCAGGAAGTTTTATTTGTTGGTGAGCCCAGAGAGCTGAGTTCCACA
ATCATGCTCTCGGACTACATACCAATTTATAATACACCGCTTCTGAATCT
ACCGAAACACATTGAAAGTATGTGTTTGTATTTAATATCCATTTCAGCAG
CTTTGGCACTTTTGAACATGGTACCTTGTTTTTATCTGGATGGTCACCAC
ACTTTGGAGATTCTTCTGGAGATACTGTTACCTCACCAGCATAAATTAAG
ATTGCAGATTCAAACGGTGATTTTGATGCTTGGATCTTCATTGTTGTTGG
TGAATGTACTTATTGCCTTATCCACTTTATTCTAGATGCCGGGAATGAAT
CTTCCATGGAATCAAGTAGCCTATTATTTGACGACTCTCATCATCTCTGG
AACTTTTCATGAAGTAGGACACGCCATCGCTGCAGTCAGAGTTCTCAACG
TTATGGATTCTTGTACACTGAGACCTTGGTATCCTTTGGTGTAACATTCT
CATTATGCCAGATCCGTTGGCAAACATCCCTCTTCAATAAACTATTCAGC
AAGATCGGCCGGTACAACCCAAAACTGTCGCTACTATGGTTTACACTTGG
AGCTGTATTTGCCGTCATTTCTATGGTCTCGTCTGTGGTCATTTTGACGT
TGATGCTGTATCGATCTGTCAAAGATACCAAAGCTGATAAACTTCTTCAA
CCGGTGATGTTGGTCACAGACACTGGTTTACTCTTCGTTATCACTTTTTG
GATTTGTCTCTTTTTCATAAACTTATTGTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039107XLOC_039107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062436-exon-scaffold_364-1575043694:332952..333103TCONS_00062436-exon-scaffold_364-1575043694:332952..333103Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1575043694:331772..332038TCONS_00062436-exon-scaffold_364-1575043694:331772..332038Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1575043694:331327..331430TCONS_00062436-exon-scaffold_364-1575043694:331327..331430Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1575043694:329321..330699TCONS_00062436-exon-scaffold_364-1575043694:329321..330699Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1510915933:332952..333103TCONS_00062436-exon-scaffold_364-1510915933:332952..333103Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1510915933:331772..332038TCONS_00062436-exon-scaffold_364-1510915933:331772..332038Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1510915933:331327..331430TCONS_00062436-exon-scaffold_364-1510915933:331327..331430Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1510915933:329321..330699TCONS_00062436-exon-scaffold_364-1510915933:329321..330699Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1491911889:332952..333103TCONS_00062436-exon-scaffold_364-1491911889:332952..333103Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1491911889:331772..332038TCONS_00062436-exon-scaffold_364-1491911889:331772..332038Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1491911889:331327..331430TCONS_00062436-exon-scaffold_364-1491911889:331327..331430Clytia hemisphaericaexon
TCONS_00062436-exon-scaffold_364-1491911889:329321..330699TCONS_00062436-exon-scaffold_364-1491911889:329321..330699Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062436-proteinTCONS_00062436-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:329321..333103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.21207	3.53525	1.82697	0.951738	16.5602	10.987	9.64512	9.93765	6.72802	10.2805	9.25662	4.38227	7.8604	5.90522	5.94963	5.74637	6.32396	7.17519	4.678	3.65974	3.46463	3.88387	7.97704	8.45372	8.88712	10.0399	4.51127	4.20123	7.11726	6.25608
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001193MBTPS2
IPR008915Peptidase_M50
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016020 membrane
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00062436 vs. Swiss-Prot (Human)
Match: MBTP2 (Membrane-bound transcription factor site-2 protease OS=Homo sapiens GN=MBTPS2 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.688e-85
Identity = 183/522 (35.06%), Postives = 277/522 (53.07%), Query Frame = 3 
Query:  129 FFINLLLKSSQRYGFLYTETLVSFGVTFSLCQIRWQTSLFNKLFSKIGRYNPKLSLLWFTLGAVFAVISMVSSVVILTLMLYRSVKDTKAD--------------------------------KLLQPVMPGMNLPWNQVAYYLTTLIISGTFHEVGHAIAAVRENVRVLSFGVFVLFMYPGAFVELHTDQLDIITPFRRLRIFSAGVWHNFILAVVAYILSTSLPMWLSPLYTMGDGVLVTHVAQQSSIVN--RLPVGDVITYINNCPVRKTEDWYLCLQKIQTNPVDGYCGPSSYTKTHNMSLPTLVENFGEPDCCNDTSAYRFCFWYKRHPKAMSLSQKLFNANILVRTSLEYNSKFTEHACLPARHILSG-KMCKTNLDCALKNATEFSLCHIPLTKNTTRVIRIGHKKGQEVLFVGEPRELSSTIMLSDYIPIYNTPLLNLPKHIESMCLYXXXXXXXXXXXNMVPCFYLDGH---HTXXXXXXXXXPHQHKLRLQIQTVILMLGSSLLLVNVLIAL 1580
            +  +L+LKSS  +   Y + L + G++ S   IRWQT++FN+ F   GR   ++   WF  G VF VI+M SS  +L   L +++    AD                                ++LQ V+PG+NLP NQ+ Y+ T ++ISG  HE+GH IAA+RE VR   FG+F+  +YPGAFV+L T  L +I+P ++LRIF AG+WHNF+LA++  +    LP+ L P Y  G GVL+T VA+ S  +    L VGD++T++ +CPV   +DW  CL  I   P  GYC  +S  +  +  +       G  +CCN+ S    CF Y+ +          FN  +              H CLPAR  +   ++C+TN DC   +++ F  C IP  +  TR+I++ H    ++L+VG P  L  T+ ++ +IP +N   ++LP  +E+   YLIS+S ALA++N VPCF LDG    ++        +   + ++  I   IL+ GS LL  NV + L
Sbjct:   18 YLTDLVLKSSVYFKHSYEDWLENNGLSISPFHIRWQTAVFNRAFYSWGRRKARMLYQWFNFGMVFGVIAMFSSFFLLGKTLMQTLAQMMADSPSSYSSSSSSSSSSSSSSSSSSSSSSSLHNEQVLQVVVPGINLPVNQLTYFFTAVLISGVVHEIGHGIAAIREQVRFNGFGIFLFIIYPGAFVDLFTTHLQLISPVQQLRIFCAGIWHNFVLALLGILALVLLPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTIAYEPQIGYCISASTLQQLSFPVRAYKRLDGSTECCNNHSLTDVCFSYRNN----------FNKRL--------------HTCLPARKAVEATQVCRTNKDCKKSSSSSF--CIIPSLETHTRLIKVKHPPQIDMLYVGHPLHLHYTVSITSFIPRFNFLSIDLPVVVETFVKYLISLSGALAIVNAVPCFALDGQWILNSFLDATLTSVIGDNDVKDLIGFFILLGGSVLLAANVTLGL 513
The following BLAST results are available for this feature:
BLAST of TCONS_00062436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBTP21.688e-8535.06Membrane-bound transcription factor site-2 proteas... [more]
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