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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062496 ID=TCONS_00062496|Name=TCONS_00062496|organism=Clytia hemisphaerica|type=transcript|length=672bp
NATGGATGAACCGAAACTGGCCCAAGCTTTCGGGTCGTGCTAGGGCCGCG
CATGGGCCAATTTaggaaaacaaaaacttttaaaacagcTTGTctccatt
tttcaaattattgtgTCTTTCTACCTATCAGGGTAAACTTTTAATACAGC
TTGTctccatttttcaaattattatgTCTTTCTACCTAACAGGGTCAACG
AAAGAAGTTCTGTGTTCACTTACATTTAGTTGCACTTGCCAGGAAGTTGA
AAGAAGGAATAATTGATCAATTAAGCTATGCTAAAGTTAATCCCACTAAG
GACTCAAATCTAACTGAAAAAACACCTAAATCAGAATTGGCTGAGATCTC
AACAGCTGTAACCAATACCATATTGATtcagaaatcaagaaaaattcCAT
TGGATATTCCACCAACGGTCCTAGCAGAAAGCCTTAAACTGGATGAAACA
ATTGAAGTTTATGTCCCTGAAGAAACTGATTGTTCACTCTGTGGAAGCGC
CTTAACAGATCCAATGAATCAAAAGGGTATGGAACATGGATACCTGATAA
CAGAGGTTGTCTCATTCAAAAAGATTAAGATAAAGatcaaaaagtgtaaa
aattcAGATTGTAATGCTACAGTTGTTCTATTTCCATATAACAAAGCTAC
CTTCAAATCAGCTAACATGGAT Run BLAST on NCBI transcript from alignment at scaffold_366:9007..10789+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062496 ID=TCONS_00062496|Name=TCONS_00062496|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_366:9007..10789+ (Clytia hemisphaerica)
NATGGATGAACCGAAACTGGCCCAAGCTTTCGGGTCGTGCTAGGGCCGCG
CATGGGCCAATTTaggaaaacaaaaacttttaaaacagcTTGTctccatt
tttcaaattattgtgTCTTTCTACCTATCAGGGTAAACTTTTAATACAGC
TTGTctccatttttcaaattattatgTCTTTCTACCTAACAGGGTCAACG
AAAGAAGTTCTGTGTTCACTTACATTTAGTTGCACTTGCCAGGAAGTTGA
AAGAAGGAATAATTGATCAATTAAGCTATGCTAAAGTTAATCCCACTAAG
GACTCAAATCTAACTGAAAAAACACCTAAATCAGAATTGGCTGAGATCTC
AACAGCTGTAACCAATACCATATTGATtcagaaatcaagaaaaattcCAT
TGGATATTCCACCAACGGTCCTAGCAGAAAGCCTTAAACTGGATGAAACA
ATTGAAGTTTATGTCCCTGAAGAAACTGATTGTTCACTCTGTGGAAGCGC
CTTAACAGATCCAATGAATCAAAAGGGTATGGAACATGGATACCTGATAA
CAGAGGTTGTCTCATTCAAAAAGATTAAGATAAAGatcaaaaagtgtaaa
aattcAGATTGTAATGCTACAGTTGTTCTATTTCCATATAACAAAGGTAA
GAAAGTGTTTTATATGTTGTTTCTATTTCATATTTGTCTAAAACCTAAAA
AAGCAAAtcatcttgaaaattaaaatttagaataatttgaaaacaaaaat
tatttgtaCTTAGATTTTATTTGTTCGTTNGCTTTGAGCTTGGTGGTAGC
TATGCAAAAAAATTGGACACTCCATCATCCAAAGCAAACAATAAGACTTC
CACTGCCATCCCGAAATCAGTTACCATTTATGGAACACCAGAGTCTGGAA
CCTTACGCTCTGTTGCAACAAGCAATAGTCATGACAgggaatttttgttt
atttcaggaAACAAAGTANGTCTCATTCAAAAAGATTAAGATAAAGatca
aaaagtgtaaaaattcAGATTGTAATGCTACAGTTGTTCTATTTCCATAT
AACAAAGGTAAGAAAGTGTTTTATATGTTGTTTCTATTTCATATTTGTCT
AAAACCTAAAAAAGCAAAtcatcttgaaaattaaaatttagaataatttg
aaaacaaaaattatttgtaCTTAGATTTTATTTGTTCGTTAGTTTAGACt
atcgtattactttgaataagtgtctggggcgtttatttaattttttcgat
tttaggaggagcgtttattaaattatttgagTCTAACGTGTAATATTTAG
AACAAATGTAGTCTTTATTTAAGTTATATATATCAGGATTTTTAGTGCTA
ATTTCTTTAGTTCATcgactaaaattgcatcgaaaactgctctggttTAT
ATTAAATGACTAAATTCCTTTTCGATCCCAATCAACACTTGTATttgcgt
ttatttgagggggcgtttattaaataaattttcttttaggaggggcgttt
aaaaaaaggGGGCTTTACtcaaagtaatacggtatacTCTTTCGTAACAT
TCTTTAAAGATAatgcttttttttcaaaggacTTTTCAATATCTCCAACA
AAGTTTTGTTAAGTCTAAGCATAATGGTGGAATGGCGTGAATTTTTGAAA
GATGGTACACCAGTCACAAACTTCATCACAAGAAAGCTAAAAGGCCTTCA
ATTGAAATTACCTGTGGTAAAGAGATACTTtttttgaaactagttttctT
GTTAAAGCTACCTTCAAATCAGCTAACATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062496-exon-scaffold_366-1491911889:9007..9652 | TCONS_00062496-exon-scaffold_366-1491911889:9007..9652 | Clytia hemisphaerica | exon |
| TCONS_00062496-exon-scaffold_366-1510915933:9007..9652 | TCONS_00062496-exon-scaffold_366-1510915933:9007..9652 | Clytia hemisphaerica | exon |
| TCONS_00062496-exon-scaffold_366-1575043694:9007..9652 | TCONS_00062496-exon-scaffold_366-1575043694:9007..9652 | Clytia hemisphaerica | exon |
| TCONS_00062496-exon-scaffold_366-1491911889:10764..10789 | TCONS_00062496-exon-scaffold_366-1491911889:10764..10789 | Clytia hemisphaerica | exon |
| TCONS_00062496-exon-scaffold_366-1510915933:10764..10789 | TCONS_00062496-exon-scaffold_366-1510915933:10764..10789 | Clytia hemisphaerica | exon |
| TCONS_00062496-exon-scaffold_366-1575043694:10764..10789 | TCONS_00062496-exon-scaffold_366-1575043694:10764..10789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_366 | supercontig | scaffold_366:9007..10789 + |
Blast
The following BLAST results are available for this feature:
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