TCONS_00062511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062511
Unique NameTCONS_00062511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062511 ID=TCONS_00062511|Name=TCONS_00062511|organism=Clytia hemisphaerica|type=transcript|length=1573bp
CAGGTAGACTAACAAGATACTATTAAGAATTATGGGTTCATCAAAATCTG
GATGGGAAAAGTTCTTCAAAGAAGCTGGTATTCCAGGGAAATTAGTTTCT
GATTATGCAAATGTGTTTTGTGACAATCGAATGAGACTTGATATGCTAGA
AGAACTAAACAAGGAGGTACTTCAAGAACTTGGAATCAAAGCTGTGGGAG
ATATCATTGCTATCCTCAGATATTCCAAGATTAAACAAAAAGAGttatca
agGAACCGCTCACCATCTCCTGATGTAGAAGTTATTACTAAGAAAGCAGT
TCCCAAGGCAGCCACATCATCCAATAAGATGGCAGCTGCTGGTCCTAGAA
TACCTCCAAAATCTTCTAATTTATCGATGACAGTGAAAGCATCAGACTCT
ACATCATCATCTAGCTCCAAAAGCAGCAGCACCAAAACAAATCGAAAAAC
TTTATCGCAGCGTTTCAACGAATACGAGAAAGAcgcaaaacaaaagaaag
ttgaaaatgaagaacaaaAGGCTGAAGAGAAACAAACAATTAAACAAACA
ACATCGAATAGTATAAAAAGTAACACCACCACTGTGTTTACAATACAGTT
GCCTTCCAAACCTCCATCCACTAAAACACAACCATTAGCTAAAAATCAAC
CTGCAGTCAGCAAACCACAAGCTCAACAAACAGTTCGACCTCAAAAAGTT
ACTCTAGTACCAGCGCAAGGAAAGACATTGAATCGTAACAAGCAGTCGAC
ATCAATTTTCGATCGATTGGATCGTCTCACTAAAGGTTCGCAAGAAGCTT
CTACTACTACAACGTCATCAACGTCAACGTCTAAACAAAAGACTGAGACG
ACAAAAAAGACTGTTACAGTTGATCCCAAACAAGATGTGTTCAGTCGGTT
AGGAACTTTACAAGATGATGAAGCAGAAGAATCTCCGCCTCCTAAAAATG
TTTTCAGTCGGTTAGGAGGAATGTAAAACATGAGGCTGAACAAACGTCTT
TAATTGGTTCCGGGCACAATTACATCTCGCGTTGAGTTTTCTTGCGCTTT
CAGAAGGATAAAGGAAGAAAGCTTGAAAAACATTGAGATTCATCGATTAC
GCGACGCTCTTTGTGAGAACCAACGACAAGTAAAACAGTGATATCCTGGT
TCTGTTGGATGGGTTAATGCAAGTGCAAAGCACTGGTTGCAAAAAAATGG
ATAAATTATTGATGTTTTAGGCAGCTGTCAAGGCTTTAAAGCGTGAAATA
ATAAAGGGAAAGTTTATCATTAAGGGATGTATAGAATATTTTGGGATACC
TTCACCGAACTGCCACCTGCTGGGATGAACATATCTTCATGATCTTGGAT
TATAATAGCTATAATGAATTATAGCTAATTTTatacttttcaaatatttt
tatttgcgaATTAGCAATTCATcaaagtatttttatatttacatttttat
tcATACCTGTTTTTATCTATAAATACTGCTATTTAGGATAATTCTGTTCA
AAATTTTACTTGTATCATGTGACTTCTGTACCCTGTTAGAGCCTTGTGTG
TTCGACCGATAGATTTCGATAGA
Run BLAST on NCBI

transcript from alignment at scaffold_367:37699..41955-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062511 ID=TCONS_00062511|Name=TCONS_00062511|organism=Clytia hemisphaerica|type=transcript|length=4257bp|location=Sequence derived from alignment at scaffold_367:37699..41955- (Clytia hemisphaerica)
CAGGTAGACTAACAAGATACTATTAAGAATTATGGGTAAGCTTTTTTCTG
AATTATGGGGAGTCACATTTTATCATTTTGGGGATGTAAAAAATAAAAAA
AATCTAAATTTTACAAGGCCTTTCTGGTGGATTACAATTTCTATATAATA
TTTTTATAACAATAAGTTAGTGGCCATAATCATTTTTATTTTATTATCTT
TTCTAGGTTCATCAAAATCTGGATGGGAAAAGTTCTTCAAAGAAGCTGGT
ATTCCAGGGAAATTAGTTTCTGAGTAAGTAGAGGAAAATGAAGATGGTGA
GGAAAATCAGAATGTATTCTCTCTATGATGATTGAAAATAAAATCAATTT
GATACATTTCTTTTTATTTTCGCAAATACAATGCTTATTACTTGAAAATA
AACCCTTAATAAGTGGACTAGAGGTGGTTTTGAAAAGATTTTAGCGCCTG
CAGCGCGTATCAACCACCCACAATGGTTACCCCGAAGGCCAAAACTCAAT
TCCTAAGTCAAAAAACGGCCAGTGAGCAAAGTGCTTGGAATTTTGCCTGA
CCTAGTAGATTACCAGGCTATTCTATGGTAAATTATGACCCTGTCTATAT
AGATTTCAAATATAAAAGGTGCAAAATTTCACAGGGGTATATATTGTATT
TGAGCTCTTCTGCAAAATTTTAAGATTTTAACATTTGGAACTTTATTTTG
CCCAAATGACAATATTGGGAGTTTATGCCACTATACTAAAGTGACTTTCT
TTATTGGTTTTAAAGCATACACATTAACCCTTCTTCCTATCATATTTTGG
AATTTTAGTCTTTGAAATGACTTGGTAGATGCCACCAAAATCTACTAAAT
TCACGAGCTTTTTATCCCCAAGTAAAAGAATATAATACAAATAGAAAGGC
CTTGTTTAGCCTTGTGTTGAAATTTATTGATTATATTTTCTAGTTATGCA
AATGTGTTTTGTGACAATCGAATGAGACTTGATATGCTAGAAGAACTAAA
CAAGGTACCAACTTATATATTGATGGATTTAGATTGCGTTTGTAATAGTT
TCAAAGAATATTGTCAGCTTTAATTTACGTTAAATCTACTTTACAATGTA
TAATAATGTATAACTTAGTAAAAAGGTCTTTTGAAATTCTTTTTAGAAAC
CTCATATAATTAGTTATGAGCTTAATGAAGTAGTTTCTTTTGGTGTTTTA
GGAGGTACTTCAAGAACTTGGAATCAAAGCTGTGGGAGATATCATTGCTA
TCCTCAGATATTCCAAGATTAAACAAAAAGAGGTAACATTAACAGTGTAA
CATTAAATACCGCGGCTTATCTCGCAGGATAAAATCAAAACAATTATTCT
GAGAGATTTCATCACAAAGTGATTCTAATGCATAGCTTAAATTGATAAAA
TGTAACGTTATTATAAACATTGCTGCATTTCTTTAAACGCAAGTTGAAAA
CTATTTCAATATATTTTTGAACATTAATCATCAATTTCCCCCAATTTTTT
CAGTTATCAAGGAACCGCTCACCATCTCCTGATGTAGAAGTTATTACTAA
GAAAGCAGTTCCCAAGGCAGCCACATCATCCAATAAGATGGCAGCTGCTG
GTCCTAGAATACCTCCAAAATCTTCTAATTGTAAGTCGGGTTTTCAGACA
AATTTGAATTAAATCAGAGGGCGGGGGTCGTTACTAAAATCTGAGACATC
ATGTTGTTTAGTATTGAGGTGGTATACCGGAAAAAACTTTTCAGAAAATA
TGGTCTCGAGAAAACATAATTTGTCCTGAGAAAAACAAAATTGGGTAGTC
TCTGTGTCAAAATGTCCCTAGAAAGTTTAGTACATGTGTACTAAAATACC
ACTTGTCTAAAGTGGGGTAAATTTTTAAAAACTTAATTTTAGTATACATA
TATGTCAGAGATTTTAGTACCCCCCCCCCCCTTAAATTTTGATTTCGAAA
AAGAAAGCAAAAACAACAATCATTTCTGCAGTACAAGCATTTTTATACAG
TATCATGAATTATAATATCCAAGCAATAGGCTTGGGTTTAAAAATATTGA
TTGGTGGATAATTAACTCGAAATTTTGTATTCTATCGCAAATCTTTAAGA
TTGATAATATTCTTTAATATTTTCTCTAGTATCGATGACAGTGAAAGCAT
CAGACTCTACATCATCATCTAGCTCCAAAAGCAGCAGCACCAAAACAAAT
CGAAAAACTTTATCGCAGCGTTTCAACGAATACGAGAAAGACGCAAAACA
AAAGAAAGTTGAAAATGAAGAACAAAAGGCTGAAGAGAAACAAACAATTA
AACAAACAACATCGAATAGTATAAAAAGTAACACCACCACTGTGTTTACA
ATACAGTTGCCTTCCAAACCTCCATCCACTAAAACACAACCATTAGCTAA
AAATCAACCTGCAGTCAGCAAACCACAAGCTCAACAAACAGTTCGACCTC
AAAAAGTTACTCTAGTACCAGGTAATAAATGTATTTTTTTGTAAAGATAA
CAATGTCTCTTTTTGATCAAGAAATGGAAACCCCTGTGTGCAGTATCTCA
AGAAATCAAACATCTTTATTTCGCCATGAACGTTGTCAGGCAGTCTGCTG
TAACAATAGCTTTCTCCTGAATTTGATTTATTGTCCCAATTGAAAAGGAG
CTAAAATCAAGATTCTATACAACCAAGATAAGCCATAAAGTCTTAAAAAA
AAAACTACTGCTGTTAACAGTTAGCAGTTGACTCAATGTCACAAATTTTG
TGAGAAAAGTGTCTTATTCTATACGGAATCCATGATAATCATCGGGACCT
ATGATAACTTCTTTGTTCTATATAAAGCAAAAAAGGGGATCGACCATGGA
ATAGTAATTAACCAAAAATTCTTTCCATAGCGCAAGGAAAGACATTGAAT
CGTAACAAGCAGTCGACATCAATTTTCGATCGATTGGATCGTCTCACTAA
AGGTTCGCAAGAAGCTTCTACTACTACAACGTCATCAACGTCAACGTCTA
AACAAAAGACTGAGACGACAAAAAAGGTTTGATCATTTCTTCTGATCCGA
TGCTTGGTGTAAGATTGTTTAAATAAGATAGTTTCAGGTTTAGAATGGCA
CATGCTATAACCTTTTCGGGAATCTATATTCTACATCTTCGTTTAGCAAT
TCAGAAAATTAAGCCTGTCTCAAAAGTATGTTGGCACTTCCTTTTTTAAC
GATTTCTCAGCACCCATTTATGCTATGTTAAAAAGCTGTACACCATTGGA
AAGATATTTTCAAGGAAAATGATCTAAAAGATAAAAGAGTGAAAAATTGG
AAAAAGAAGAAAAGAAAAATTATGAAGATAAAAAAAGTGAAGATTTTTTC
CACTGGTTCGAAAATCATGACATACCTTTTAGAATATTTGAACCTTGCTG
ATTTTAAATATGTGCTTGAAATTTTCGTATCTTTCTTAGAAAAAATTTAC
AGCAATTTGAAATTGGTCCATCTTTGCTGTCTTTGATCGTTTCTTGCTGT
TTTAGGTGTAAAATGTTTCACATCTTCGTTCTTTCTCTCACAGACTGTTA
CAGTTGATCCCAAACAAGATGTGTTCAGTCGGTTAGGAACTTTACAAGAT
GATGAAGCAGAAGAATCTCCGCCTCCTAAAAATGTTTTCAGTCGGTTAGG
AGGAATGTAAAACATGAGGCTGAACAAACGTCTTTAATTGGTTCCGGGCA
CAATTACATCTCGCGTTGAGTTTTCTTGCGCTTTCAGAAGGATAAAGGAA
GAAAGCTTGAAAAACATTGAGATTCATCGATTACGCGACGCTCTTTGTGA
GAACCAACGACAAGTAAAACAGTGATATCCTGGTTCTGTTGGATGGGTTA
ATGCAAGTGCAAAGCACTGGTTGCAAAAAAATGGATAAATTATTGATGTT
TTAGGCAGCTGTCAAGGCTTTAAAGCGTGAAATAATAAAGGGAAAGTTTA
TCATTAAGGGATGTATAGAATATTTTGGGATACCTTCACCGAACTGCCAC
CTGCTGGGATGAACATATCTTCATGATCTTGGATTATAATAGCTATAATG
AATTATAGCTAATTTTATACTTTTCAAATATTTTTATTTGCGAATTAGCA
ATTCATCAAAGTATTTTTATATTTACATTTTTATTCATACCTGTTTTTAT
CTATAAATACTGCTATTTAGGATAATTCTGTTCAAAATTTTACTTGTATC
ATGTGACTTCTGTACCCTGTTAGAGCCTTGTGTGTTCGACCGATAGATTT
CGATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039171XLOC_039171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062511-exon-scaffold_367-1575043694:41921..41955TCONS_00062511-exon-scaffold_367-1575043694:41921..41955Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:41683..41749TCONS_00062511-exon-scaffold_367-1575043694:41683..41749Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:40952..41012TCONS_00062511-exon-scaffold_367-1575043694:40952..41012Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:40674..40754TCONS_00062511-exon-scaffold_367-1575043694:40674..40754Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:40326..40452TCONS_00062511-exon-scaffold_367-1575043694:40326..40452Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:39485..39826TCONS_00062511-exon-scaffold_367-1575043694:39485..39826Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:38930..39075TCONS_00062511-exon-scaffold_367-1575043694:38930..39075Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1575043694:37699..38412TCONS_00062511-exon-scaffold_367-1575043694:37699..38412Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:41921..41955TCONS_00062511-exon-scaffold_367-1510915933:41921..41955Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:41683..41749TCONS_00062511-exon-scaffold_367-1510915933:41683..41749Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:40952..41012TCONS_00062511-exon-scaffold_367-1510915933:40952..41012Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:40674..40754TCONS_00062511-exon-scaffold_367-1510915933:40674..40754Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:40326..40452TCONS_00062511-exon-scaffold_367-1510915933:40326..40452Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:39485..39826TCONS_00062511-exon-scaffold_367-1510915933:39485..39826Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:38930..39075TCONS_00062511-exon-scaffold_367-1510915933:38930..39075Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1510915933:37699..38412TCONS_00062511-exon-scaffold_367-1510915933:37699..38412Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:41921..41955TCONS_00062511-exon-scaffold_367-1491911889:41921..41955Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:41683..41749TCONS_00062511-exon-scaffold_367-1491911889:41683..41749Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:40952..41012TCONS_00062511-exon-scaffold_367-1491911889:40952..41012Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:40674..40754TCONS_00062511-exon-scaffold_367-1491911889:40674..40754Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:40326..40452TCONS_00062511-exon-scaffold_367-1491911889:40326..40452Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:39485..39826TCONS_00062511-exon-scaffold_367-1491911889:39485..39826Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:38930..39075TCONS_00062511-exon-scaffold_367-1491911889:38930..39075Clytia hemisphaericaexon
TCONS_00062511-exon-scaffold_367-1491911889:37699..38412TCONS_00062511-exon-scaffold_367-1491911889:37699..38412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_367supercontigscaffold_367:37699..41955 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9152	13.918	6.10735	5.82699	16.6583	11.4526	14.9958	17.9477	16.8414	17.2459	15.9281	14.4928	11.9401	12.7525	14.5524	15.5373	23.3747	17.0367	9.96703	11.0118	14.6735	14.5607	23.5368	23.4386	7.7975	7.16343	12.6562	10.5766	18.8362	18.6372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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