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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062515 ID=TCONS_00062515|Name=TCONS_00062515|organism=Clytia hemisphaerica|type=transcript|length=1701bp CCTTAAATAAAGAATTTGATTGAAAGTGATAGTTTCGACATTCAGCAAGG GTCAAATTAAAGCAGGTTTTTGATGCATGTTATACTTGAATCATTATGAA GTGCTAATAACTATATTACAATTAATGaataaaactgaataaaaaattac GATAAATTCAATGCTTGAATAATGTTCATAAAGATGCCAGAGGCAGGTAA ATTTACATTTGCTGGTATACTTTATGACGGCCATTATACTGCCTACATTC TGTTATGTATAAATTTGTATGCAAGTCATTTCTGCAGTGCCAAAGATGTA AAATTATTTTGGCAATTAAGAGGATCTTGAAGAATTTTGTCAGTTCTTGT CAAATAAAAGGTCTTTGTGTAAtaaatattgttttcattttttgttttct tgttccaaaatctttttaatttctttcacAACTTTTGGCATATTTTCTTC ATATTCTTCTTCATTGGTGAACATATAATACAACTTCGATCCCATGATCA TATCCAAACTATGTCCACCTCTAGGTTCGAAATCTTCCTCCAATTTCAAT GGAATGAATGGTTTCTTCTTCTTACTGACAAATTCGTATTGAAACTTGTT AAGTTCGTCCATCTCGTATTTTTCAGTCagacaaatcaaaacaactttaG CTTTGTTGATTATCTCATTGATTGGCCTTTCGTCGTCATCGCTGGGATTG TAGATTCGAATGCTATTATCGTCATTCAAACACTTTGCAATGGTATCAAC GGTTGATTTGGAATcataatgaaatgaaatgaaaacatCACATTCCTCGC CATCATCAGCACCACCACCACCAGAGCCTTTAGACAACACTTCAATCaat gcttcatttttctgtGCTTTTGCCAGATCTAATGGTGTTTCTTCTTTTCC ATCACGTTCAGATTTCAAAGAAACATCAGCTCCAGCTTTGACCAACTTTT TCACAATCTTCAACAATGCTGTTgatttttcttcatctttcaATCGAAGC AAATAACTGTAACAGACTTCGTACAAGACACTCTGTTTAAATTGTTCGTT GAAAGTGTTCAAATCAAGTTTCTCTTCCTTCAAGAGATAACTCAGACACT TCACTGCACAGTGTTTATAAGCAGCATGTCGAATCAAACCACCTCTAGAG CAAGACACATTCAAATCAGCACCTTTCTCTTTCAAGAATTTCAGCAACTC AAGATCATCTCTTTCGATAGCAGCATGGACAGGCACAAACTTGTTCCATC CTGGTTTGTTAATATCAGCTTTCTCTTCGATCAGATGCTCAATGATTTCA CGATGCCCTGATACACAGGCTTGATATAGTGGTCTGATTGTTTTGCCATC TTTCTTGTTGACTTCAGCCCCGTTGTCAATCAATATTTTGACAGCTTCCA AGTTTCCCTTTTCACAGGCTAAAGTTAAaggtgttttgattttgatagct TCGTCCTCTGCCtcttcaaaaacttgatttagTTTTTCTTTATCATCGAA ATTTTTCAGCGTATCCAAATCCTCGTTTTGTAGGGCTTCAAGAATATCCA TTTTCGCGACGACACAGGACAAAAAAGTTGAagttctttttctgtttttg ctTTCGTTCTACACTGAAATNtaaaaaaaattgaagttctttttctgttt ttgctTCGTTCTACACTGAAATACGATtttaatgtttcatttttatgtgA G Run BLAST on NCBI protein sequence of TCONS_00062515-protein >TCONS_00062515-protein ID=TCONS_00062515-protein|Name=TCONS_00062515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MDILEALQNEDLDTLKNFDDKEKLNQVFEEAEDEAIKIKTPLTLACEKGN LEAVKILIDNGAEVNKKDGKTIRPLYQACVSGHREIIEHLIEEKADINKP GWNKFVPVHAAIERDDLELLKFLKEKGADLNVSCSRGGLIRHAAYKHCAV KCLSYLLKEEKLDLNTFNEQFKQSVLYEVCYSYLLRLKDEEKSTALLKIV KKLVKAGADVSLKSERDGKEETPLDLAKAQKNEALIEVLSKGSGGGGADD GEECDVFISFHYDSKSTVDTIAKCLNDDNSIRIYNPSDDDERPINEIINK AKVVLICLTEKYEMDELNKFQYEFVSKKKKPFIPLKLEEDFEPRGGHSLD MIMGSKLYYMFTNEEEYEENMPKVVKEIKKILEQENKK Run BLAST on NCBI transcript from alignment at scaffold_367:94808..96508 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062515 ID=TCONS_00062515|Name=TCONS_00062515|organism=Clytia hemisphaerica|type=transcript|length=1701bp|location=Sequence derived from alignment at scaffold_367:94808..96508 (Clytia hemisphaerica) CTcacataaaaatgaaacattaaaATCGTATTTCAGTGTAGAACGAagca
aaaacagaaaaagaacttcaattttttttaNATTTCAGTGTAGAACGAAa
gcaaaaacagaaaaagaactTCAACTTTTTTGTCCTGTGTCGTCGCGAAA
ATGGATATTCTTGAAGCCCTACAAAACGAGGATTTGGATACGCTGAAAAA
TTTCGATGATAAAGAAAAActaaatcaagtttttgaagaGGCAGAGGACG
AagctatcaaaatcaaaacacctTTAACTTTAGCCTGTGAAAAGGGAAAC
TTGGAAGCTGTCAAAATATTGATTGACAACGGGGCTGAAGTCAACAAGAA
AGATGGCAAAACAATCAGACCACTATATCAAGCCTGTGTATCAGGGCATC
GTGAAATCATTGAGCATCTGATCGAAGAGAAAGCTGATATTAACAAACCA
GGATGGAACAAGTTTGTGCCTGTCCATGCTGCTATCGAAAGAGATGATCT
TGAGTTGCTGAAATTCTTGAAAGAGAAAGGTGCTGATTTGAATGTGTCTT
GCTCTAGAGGTGGTTTGATTCGACATGCTGCTTATAAACACTGTGCAGTG
AAGTGTCTGAGTTATCTCTTGAAGGAAGAGAAACTTGATTTGAACACTTT
CAACGAACAATTTAAACAGAGTGTCTTGTACGAAGTCTGTTACAGTTATT
TGCTTCGATtgaaagatgaagaaaaatcAACAGCATTGTTGAAGATTGTG
AAAAAGTTGGTCAAAGCTGGAGCTGATGTTTCTTTGAAATCTGAACGTGA
TGGAAAAGAAGAAACACCATTAGATCTGGCAAAAGCacagaaaaatgaag
cattGATTGAAGTGTTGTCTAAAGGCTCTGGTGGTGGTGGTGCTGATGAT
GGCGAGGAATGTGatgttttcatttcatttcattatgATTCCAAATCAAC
CGTTGATACCATTGCAAAGTGTTTGAATGACGATAATAGCATTCGAATCT
ACAATCCCAGCGATGACGACGAAAGGCCAATCAATGAGATAATCAACAAA
GCtaaagttgttttgatttgtctGACTGAAAAATACGAGATGGACGAACT
TAACAAGTTTCAATACGAATTTGTCAGTAAGAAGAAGAAACCATTCATTC
CATTGAAATTGGAGGAAGATTTCGAACCTAGAGGTGGACATAGTTTGGAT
ATGATCATGGGATCGAAGTTGTATTATATGTTCACCAATGAAGAAGAATA
TGAAGAAAATATGCCAAAAGTTgtgaaagaaattaaaaagattttggaac
aagaaaacaaaaaatgaaaacaatatttaTTACACAAAGACCTTTTATTT
GACAAGAACTGACAAAATTCTTCAAGATCCTCTTAATTGCCAAAATAATT
TTACATCTTTGGCACTGCAGAAATGACTTGCATACAAATTTATACATAAC
AGAATGTAGGCAGTATAATGGCCGTCATAAAGTATACCAGCAAATGTAAA
TTTACCTGCCTCTGGCATCTTTATGAACATTATTCAAGCATTGAATTTAT
CgtaattttttattcagttttattCATTAATTGTAATATAGTTATTAGCA
CTTCATAATGATTCAAGTATAACATGCATCAAAAACCTGCTTTAATTTGA
CCCTTGCTGAATGTCGAAACTATCACTTTCAATCAAATTCTTTATTTAAG
G Coding sequence (CDS) from alignment at scaffold_367:94808..96508 >TCONS_00062515 ID=TCONS_00062515|Name=TCONS_00062515|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_367:94808..96508 (Clytia hemisphaerica) ATGGATATTCTTGAAGCCCTACAAAACGAGGATTTGGATACGCTGAAAAA TTTCGATGATAAAGAAAAActaaatcaagtttttgaagaGGCAGAGGACG AagctatcaaaatcaaaacacctTTAACTTTAGCCTGTGAAAAGGGAAAC TTGGAAGCTGTCAAAATATTGATTGACAACGGGGCTGAAGTCAACAAGAA AGATGGCAAAACAATCAGACCACTATATCAAGCCTGTGTATCAGGGCATC GTGAAATCATTGAGCATCTGATCGAAGAGAAAGCTGATATTAACAAACCA GGATGGAACAAGTTTGTGCCTGTCCATGCTGCTATCGAAAGAGATGATCT TGAGTTGCTGAAATTCTTGAAAGAGAAAGGTGCTGATTTGAATGTGTCTT GCTCTAGAGGTGGTTTGATTCGACATGCTGCTTATAAACACTGTGCAGTG AAGTGTCTGAGTTATCTCTTGAAGGAAGAGAAACTTGATTTGAACACTTT CAACGAACAATTTAAACAGAGTGTCTTGTACGAAGTCTGTTACAGTTATT TGCTTCGATtgaaagatgaagaaaaatcAACAGCATTGTTGAAGATTGTG AAAAAGTTGGTCAAAGCTGGAGCTGATGTTTCTTTGAAATCTGAACGTGA TGGAAAAGAAGAAACACCATTAGATCTGGCAAAAGCacagaaaaatgaag cattGATTGAAGTGTTGTCTAAAGGCTCTGGTGGTGGTGGTGCTGATGAT GGCGAGGAATGTGatgttttcatttcatttcattatgATTCCAAATCAAC CGTTGATACCATTGCAAAGTGTTTGAATGACGATAATAGCATTCGAATCT ACAATCCCAGCGATGACGACGAAAGGCCAATCAATGAGATAATCAACAAA GCtaaagttgttttgatttgtctGACTGAAAAATACGAGATGGACGAACT TAACAAGTTTCAATACGAATTTGTCAGTAAGAAGAAGAAACCATTCATTC CATTGAAATTGGAGGAAGATTTCGAACCTAGAGGTGGACATAGTTTGGAT ATGATCATGGGATCGAAGTTGTATTATATGTTCACCAATGAAGAAGAATA TGAAGAAAATATGCCAAAAGTTgtgaaagaaattaaaaagattttggaac aagaaaacaaaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062515-exon-scaffold_367-1491911889:94808..96508 | TCONS_00062515-exon-scaffold_367-1491911889:94808..96508 | Clytia hemisphaerica | exon |
TCONS_00062515-exon-scaffold_367-1510915933:94808..96508 | TCONS_00062515-exon-scaffold_367-1510915933:94808..96508 | Clytia hemisphaerica | exon |
TCONS_00062515-exon-scaffold_367-1575043694:94808..96508 | TCONS_00062515-exon-scaffold_367-1575043694:94808..96508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_367 | supercontig | scaffold_367:94808..96508 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
Vocabulary: Biological Process
Term | Definition |
GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007165 |
signal transduction |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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