TCONS_00062527 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062527
Unique Name	TCONS_00062527
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4440

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_369:7363..13544+

transcript sequence

>TCONS_00062527 ID=TCONS_00062527|Name=TCONS_00062527|organism=Clytia hemisphaerica|type=transcript|length=4440bp
cagaagaaataaataaaaactaaaatcaatTGATTATGGCTAAGCTGCAA
TATAACATGATCATCATTATGCAAGGTGGCATTGGTAATACCAGTCTGCA
AGCAATTTACAGTAACCAGTTGTAAAACAGTAGATGATTGGCAAAAGTTA
CTAAAAAGGCTGGTGTGATTGATGATTTTAAACCATTGAAGAATCCAAAG
CGAACCCTCTCAagcattgaaaaaaaacttggaaAGTATGGATAACAAGC
ATTCCAAGCATAATAGTaATGGCATCCTTTTATCTGAATCATCAAATCAA
TCATGCAATGAAACTTTGTATGAAAAAGATATAACTTTACAAGATGATTC
AGAACAAACTGATTCTTGCAATGAAGATTCAAGTTTATCTAGTGACGAAA
AAAATAATCTAGGTCATGATATACCAAGTCATTTATCCAGTCCAGATAAC
ACATCCAATAAATTCAATTATATAATGACAATGGAAGAGGTAAATGAGCT
TCGTGAATATGTCATTAGTTTAAGGCAAACCGGTGATGATATTGTTAGTT
TAAAAATTGAagatattgaaaatgaaagaatttccaAATTCAAAGGTAAC
AAGAATCCTCAAAACCAAGGTATCTACCTTTTTCACCAATCTGAAATGCA
ACAATATCTCCTCAATAAGTATGGATCTGTTCTgtttatcaaagaaatta
aACAAAGACGAGCAGCagaatcaaataaattaaacaatttttcattgttt
ttgatttGTGTACGGACAAATTTAGATTGTCAAGTTGTTAGCTTGATACT
CACAAACCAATTATATGGATTTAGCAAGGCTTTGAAGCAAGGCTTGTTAG
AACTGCAACTCAATAATGGACTTTGGCAACCAAAATATCTGATGATTGAT
CCTTTACAACATGTTATTGATGCTGTGCAGGAGgcGTAGCCTTCTTCTTC
AATCAGAGTGGATGTTTACAGGAGACTGAAGAGTATTTGTCGTTAAATCT
GATTGAGAATTCTGAAGAAGACACAAAAAAGCTTTTCCTGGATTTAAACC
AAATGCTTGAACGCACAACAAAGAGTGCTGCATTCCTTGACCTAGcaaga
ttgaagaaaaagaaggcaACCAATCTGgaagaaaacttaaaatggtTTTC
AACACATCCAAAGAAGTGGCTTCAAAGTTGTTTTCCAGATGATCTATCTT
GTCTTCTACAATATGATTGGTTGAGAGAAGTTGTAAACTTGTACAGAAGT
GTTTTGATGAAGTTAGGTGCGAGTAGTTATTATGGCATTGTTCCAGTGGT
CAAACAACTTACACAAGAACTTCCTAAGTATTCCTACCAAAGATATGCAA
CCAGGAATCAGAGACATTTCAAGAACAATCAACTTGTGTTAAAGTACCAT
CCATCACTTGAGAAGGATTTGGGTTTGCCCCTTTTTATGATTGACCATGT
TAAACAAATTGTTGACGAAATCATCATTGAGGATCAGGTGACAATTGTTG
AGTGTTATGCCCCTCGTAAATTTGAAGTAACCAATCAATCAAATGATAAT
GCAGTGCACTTGGTTAATCTTGGTACCCAAACCACTTTTCCATCATGCAC
TTGTCTGCAGTGGAAAAATAAACCTTTACCTTGTCAACACATGTTTAAAG
TTTTTGCTGGTAGCCTGTTGGGTTACAAGTTATTTAAACCATACTATAGA
TTGAATTCATATTTCCAGATCGATTATTCTTGTGTAAAAATGGGGATGTT
GTCAACTAAGAGTCATTatgataacattttcaaaaccaaAGATGAGCTTA
CATCTAAGGGTTTGCCTGAATGTTCGAAGAAGGATCTTATGAGATATGGA
TCGTTgtattttgatgttgattttttCAAGTACTTTTCATATGAACTGGA
CCAATTGCAAGCGCCATGTGTAAAAGTAGGATCTGGTCTATCTAAAGTCT
CCAGAAGTAGCCAAActgtggaaaaatattttagacatTCAAATGTAACT
AACTCCAAAGAAAGTATACCGAGAGGGTCTGACGGAAGATTTATGAAAAG
CAAACACAAGAATCAAAATCTCTCAAAAGAATGTATCAAGGGGAGTTCCA
AGTCTACTGACAAAAAACCGAAGACAAATCCGACAAAAACTGCAGTAGAT
GATGAAAATTGTACACAAACAAAATCACttagaaatgaaagaaacaatCA
ACCATTATCACGTACTTCTAGACAATGcaaatctttttataaaagTCGAG
AGCAAAAGCAGCGAGCAGATCAAATGGTTAAAGCTCAAAGACTCAAAGAG
TACAAAGAGTCAATGAAAAAACTTGCACTAAGCAGTGGTTTTTCATGCTA
TCAGAATTCCAATACTTCAAGTAATGAAATCAGTGATATCTCTGCAAATG
AAAaactaaatgaaaaatttccacAATCAATTATGAAGTCTACATTGCTG
TTGAATTCCAAAAATACACAAGCTTCAATTACAAGACCCTCGGCATGTAC
AAAGCTAACAATTTCGCACTGTGCTCCTTCTACAGGAAAACAATGTTCAG
TTACTGTTCAAAGCATATCGACTCAAATTAAACCAGCCCAAATTCAACAA
GCTACATCTGAAAATGCAACAACAAAGCAATCACTACCAATTAGTAATAA
AACAATACCAACTAAAGTTACAGTCTCACCGACCACAGTGCTAGATTCTA
TTCAATCGACAGTGTTGAAAATGTTTGTCCACACAGATCAATCACTTCCG
ATCATACTTCAACCAGCAATAACAAACAATGTCACCCTAACGCAGAAATC
AGTGTCAAAAGCAACTAGTAGTACGATAACACTACCTAAACCCACAGTTC
TAAACAAGATTCAACCAGGAACATCAAATATGATTGCCCGACAAAAACAG
CCAGTACCAATTAATACTCAACCGAAAGTGAGAAAATTCGTCGCACCCAG
CCAATCATTATCTTTAACAACCAAACCCAATGCAGTGCTTCCAAAACAAT
CATTACCAATCATTCAACCATCAACATCAAATAAGATTGTTTCTCCAAAG
CAGCCAGCGATTGTTAAGCCATCCAAAACAGCCAAAACAATCATTGTCCT
ACCAGAATCATTACTTCCAGGGTTTGCATCTAAGGCAAAAGGAATTCTTC
CAATACTGACATCTCCCACTTCAAAAGCAGCGCCTGTTCATACAAAACCA
AATGAAAAGAATGTCCAGAGCTTGCTTAAGCTCTTAGCTGACAAGGATAC
CCCTAAACATGTCTCAAAGAATGCCCCTCATTCGCTTAAAGCTGTTAACG
ACAGTTTCAATGTTGCTGTGAATAAGTTTCACAGTACAATCCCGCCCAAA
AAACTCCTCAATACAAATGGAAATCATTACCAAGATGCTGGATCTGTAAC
ATCAAATAATGatcaaattaaagtttttcaaaaccAAGCCAAACAAGTTA
TCAATAAACCCAAATTGAACCCAGAGCAGTTTTTGGTACTACCGAGAAAG
ACAAACCCTAAAACTACAAACTCAATAAATGATAACACTTTAGATCAACT
TTCCAGCGAAGAAATTACCAGAAGATCACAGCCACTAAACCCTGCAATGA
CATTAGATTCAAATCAAATTGGTATTTCAGCACCACTACCGTCGAAGAGG
AAATTGTTGCAACCTGATTCTAGTAATCCTACCAACAATTGTGCTGGAAA
TATAATTGGCATGGCAACAAGTGAGATTTCAACATTACAACCTGTTACAA
AGCATCGTCGGAAATCAGAAAACCCAATACGTAGAAAAACGGATAACACG
TCAGGACCACTGTCATTGGACTCTCCTGGCTTGAGGGTTATGAATGCACA
GGCGATAGATGCGTTTATAGATTCGTTCGAGATTAAGAAAGAGGTAACAT
CTGTTATGAGTGGGGTGGTATCAGACTCGCCTCATTTGCAACTAAACACT
TTGAATGGTAACCATGGTAACATTGAAGAGGTTTTAGATATTGAAATCAA
AATCGAACCATCAGATCTTTTGATGgatcaattttagttttttgaaactt
ttggactagttttttaaaggtttctgaatttaattttgcaacttATTTGT
CTGAAATTGCTGCCGTCGAGGCAAAAGGTCTAATCTCAGTTTGCTTTCCA
AACTTAAATTCTAAGATTTGTCCTTTCTTTTAGTGGAGAAGGATCTTATC
TACAAGAAAAAGGGCCAGCCTCACAATTTTAagttagaaaagtaaaaaaa
taaattcgatTTTTCCCAGATATTTTGAGATTGGACTTTTTGCCTCGATG
ATAGCGAAATCTGCCCGGATTatatttataattttcattCTGCTATCTTT
AAACCTAAGCTCCTTTGGGTAGATTTCTTCCAAATTCACAGAAATTTGTT
GCTAAACTCTTCGATTCATATCTGAAAAGTTATCTGTGTT

Run BLAST on NCBI

transcript from alignment at scaffold_369:7363..13544+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062527 ID=TCONS_00062527|Name=TCONS_00062527|organism=Clytia hemisphaerica|type=transcript|length=6182bp|location=Sequence derived from alignment at scaffold_369:7363..13544+ (Clytia hemisphaerica)
cagaagaaataaataaaaactaaaatcaatTGATTATGGCTAAGCTGCAA
TATAACATGATCATCATTATGCAAGGTGGCATTGGTAATACCAGTCTGCA
AGCAATTTACAGTAACCAGTTGTAAAACAGTAGATGATTGGCAAAAGTTA
CTAAAAAGGCTGGTGTGGTAATTACACAACCATTTCAAAAGTTTCTcaat
gtcatttttttctagCACATTGGTCAGTAAAACAAGCAGCTAGGTTTATT
AATGCCATACCAATATTTGTCTAATTTCCAGGTACTTAAAATTACTTGGA
AGTCATATATTTGTTTAGTTCTTAAATAATTAATAAATGTGTCtacaatg
aaaatattttcattgttttactGGGGCTGTAGATTGTTCAATAGGTGCCT
GCCTGCCTGTCTGTCTATTATGATTATTGATGTTAAATTTGACTTTACTT
TGGTTATCCTTTCATTCCATTTCAAGATTGATGATTTTAAACCATTGAAG
AATCCAAAGCGAACCCTCTCAagcattgaaaaaaaacttggaaAGTATGG
ATAACAAGCATTCCAAGCATAATAGTGTAAGGTTTTAACTAAGTTATCTT
TctgtaatatttttaaattttgggagAGTATGTATGGCAGGAGGTAATTT
ACTGATTTTTCACCTTgaatacatttttctttttccttttagaATGGCAT
CCTTTTATCTGAATCATCAAATCAATCATGCAATGAAACTTTGTATGAAA
AAGATATAACTTTACAAGATGATTCAGAACAAACTGATTCTTGCAATGAA
GATTCAAGTTTATCTAGTGACGAAAAAAATAATCTAGGTCATGATATACC
AAGTCATTTATCCAGTCCAGATAACACATCCAATAAATTCAATTATATAA
TGACAATGGAAGAGGTAAATGAGCTTCGTGAATATGTCATTAGTTTAAGG
CAAACCGGTGATGATATTGTTAGTTTAAAAATTGAagatattgaaaatga
aagaatttccaAATTCAAAGGTAACAAGAATCCTCAAAACCAAGGTATCT
ACCTTTTTCACCAATCTGAAATGCAACAATATCTCCTCAATAAGTATGGA
TCTGTTCTgtttatcaaagaaattaaACAAAGACGAGCAGCagaatcaaa
taaattaaacaatttttcattgtttttgatttGTGTACGGACAAATTTAG
ATTGTCAAGTTGTTAGCTTGATACTCACAAACCAATTATATGGATTTAGC
AAGGCTTTGAAGCAAGGCTTGTTAGAACTGCAACTCAATAATGGACTTTG
GCAACCAAAATATCTGATGATTGATCCTTTACAACATGTTATTGATGCTG
TGCAGGAGGTATTTCCAGGTTTGTTTCTCACACAGGCTCTCTTCTTTTAC
CNTATCTGATGATTGATCCTTTACAACATGTTATTGATGCTGTGCAGGAG
GTATTTCCAGGTTTGTTTCTCACACAGGCTCTCTTCTTTTACCTATTATA
TACAAATATTAGACAGTACTTAACTATATATTGTGTAAAAGCCATAATGG
CTAAAAATAAAGTtaacatattcttcaaaaagagGTGTTAAAAGAGGACA
GTAGTAAATGTCTTCTTCTATAGGGTGTGaataattaatttatttttttt
aaattcaggcGTAGCCTTCTTCTTCAATCAGAGTGGATGTTTACAGGAGA
CTGAAGAGTATTTGTCGTTAAATCTGATTGAGAATTCTGAAGAAGACACA
AAAAAGCTTTTCCTGGATTTAAACCAAATGCTTGAACGCACAACAAAGAG
TGCTGCATTCCTTGACCTAGcaagattgaagaaaaagaaggcaACCAATC
TGgaagaaaacttaaaatggtTTTCAACACATCCAAAGGTTAGCTCTATT
ATGTACAAGGGTACTTATTACGAATGTGAATTACAgtatgtaaaaattaa
aaatcaccAGGACGggataaaaaacattttatattaacaaaaccgaaaaa
aaatgctttttagtTAATTTTCACCACAAGACTATCACTTAGTTAAGTCC
TAAGGCAACTACTTTTTTTTCTGGTTTAAGGAATGACTGATgcttttttt
actaaaattaaaaaaaaaaaatatttttcattgtttttcaaaCCCTGTCT
GATCTGCCATAAATggcaaattttaaagaaaacttcagTTTATAAGAGCA
GGAAATCAGGGAAACGTGTTAGTGGAgctctttttttctcaatttgctTA
CCTGGTTGTCACTTCAACACAAATACTCTactgaaaaacatttttcgatt
tATTGGTATGTAATTTGTAGGTTTACTCAAACCACCtttcatattatttt
ttaaacactaaattaaaaaaaaaattattttatttatttccatCCTTTCC
ANTATTTTTTAAacactaaattaaaaaaaaaattattttatttatttcca
tCCTCTGGTCCAAaaaccagaaaatgaaaaaagaaatacttgcctaaaga
aataatatttaaattacattttgaagaaaaataaggTGTTGTCCTTATTG
ATTTTTATAGAAGTGGCTTCAAAGTTGTTTTCCAGATGATCTATCTTGTC
TTCTACAATATGATTGGTTGAGAGAAGTTGTAAACTTGTACAGAAGTGTT
TTGATGAAGTTAGGTGCGAGTAGTTATTATGGCATTGTTCCAGTGGTCAA
ACAACTTACACAAGAACTTCCTAAGTATTCCTACCAAAGGTAAAATTTAT
TCCCTTTTAAGCTCGCCCCATTCTTGTTCATCTTTTCAAATTCTTCTTTG
CTTTTCAGTGCAGAAAGTTATCATATTAGAATTTCAAATGTTAAGGAAAA
GGGCAAAGGCAAATAAAgcgctattcatgatatgcaccactgcgaTGACT
TCAccaaattatgcaacttttctgtttttgttccacccaatacgtcactt
tttcaattgTTTAATTGACGtactgggtggaaaattttaaacgttttcag
aagactctccagtggtgcattgAAATTACTATTCAAAGTTAACTAGACTG
TTCGTTTTGATTATAACAACCCTGATTAATTTAGATATGCAACCAGGAAT
CAGAGACATTTCAAGAACAATCAACTTGTGTTAAAGTACCATCCATCACT
TGAGAAGGATTTGGGTTTGCCCCTTTTTATGATTGACCATGTTAAACAAA
TTGTTGACGAAATCATCATTGAGGATCAGGTGACAATTGTTGAGTGTTAT
GCCCCTCGTAAATTTGAAGTAACCAATCAATCAAATGATAATGCAGTGCA
CTTGGTTAATCTTGGTACCCAAACCACTTTTCCATCATGCACTTGTCTGC
AGTGGAAAAATAAACCTTTACCTTGTCAACACATGTTTAAAGTTTTTGCT
GGTAGCCTGTTGGGTTACAAGTTATTTAAACCATACTATAGATTGAATTC
ATATTTCCAGATCGATTATTCTTGTGTAAAAATGGGGATGTTGTCAACTA
AGAGTCATTatgataacattttcaaaaccaaAGATGAGCTTACATCTAAG
GGTTTGCCTGAATGTTCGAAGAAGGATCTTATGAGATATGGATCGTTgta
ttttgatgttgattttttCAAGTACTTTTCATATGAACTGGACCAATTGC
AAGCGCCATGTGTAAAAGTAGGATCTGGTCTATCTAAAGTCTCCAGAAGT
AGCCAAActgtggaaaaatattttagacatTCAAATGTAACTAACTCCAA
AGAAAGTATACCGAGAGGGTCTGACGGAAGATTTATGAAAAGCAAACACA
AGAATCAAAATCTCTCAAAAGAATGTATCAAGGGGAGTTCCAAGTCTACT
GACAAAAAACCGAAGACAAATCCGACAAAAACTGCAGTAGATGATGAAAA
TTGTACACAAACAAAATCACttagaaatgaaagaaacaatCAACCATTAT
CACGTACTTCTAGACAATGcaaatctttttataaaagTCGAGAGCAAAAG
CAGCGAGCAGATCAAATGGTTAAAGCTCAAAGACTCAAAGAGTACAAAGA
GTCAATGAAAAAACTTGCACTAAGCAGTGGTTTTTCATGCTATCAGAATT
CCAATACTTCAAGTAATGAAATCAGTGATATCTCTGCAAATGAAAaacta
aatgaaaaatttccacAATCAATTATGAAGTCTACATTGCTGTTGAATTC
CAAAAATACACAAGCTTCAATTACAAGACCCTCGGCATGTACAAAGCTAA
CAATTTCGCACTGTGCTCCTTCTACAGGAAAACAATGTTCAGTTACTGTT
CAAAGCATATCGACTCAAATTAAACCAGCCCAAATTCAACAAGCTACATC
TGAAAATGCAACAACAAAGCAATCACTACCAATTAGTAATAAAACAATAC
CAACTAAAGTTACAGTCTCACCGACCACAGTGCTAGATTCTATTCAATCG
ACAGTGTTGAAAATGTTTGTCCACACAGATCAATCACTTCCGATCATACT
TCAACCAGCAATAACAAACAATGTCACCCTAACGCAGAAATCAGTGTCAA
AAGCAACTAGTAGTACGATAACACTACCTAAACCCACAGTTCTAAACAAG
ATTCAACCAGGAACATCAAATATGATTGCCCGACAAAAACAGCCAGTACC
AATTAATACTCAACCGAAAGTGAGAAAATTCGTCGCACCCAGCCAATCAT
TATCTTTAACAACCAAACCCAATGCAGTGCTTCCAAAACAATCATTACCA
ATCATTCAACCATCAACATCAAATAAGATTGTTTCTCCAAAGCAGCCAGC
GATTGTTAAGCCATCCAAAACAGCCAAAACAATCATTGTCCTACCAGAAT
CATTACTTCCAGGGTTTGCATCTAAGGCAAAAGGAATTCTTCCAATACTG
ACATCTCCCACTTCAAAAGCAGCGCCTGTTCATACAAAACCAAATGAAAA
GAATGTCCAGAGCTTGCTTAAGCTCTTAGCTGACAAGGATACCCCTAAAC
ATGTCTCAAAGAATGCCCCTCATTCGCTTAAAGCTGTTAACGACAGTTTC
AATGTTGCTGTGAATAAGTTTCACAGTACAATCCCGCCCAAAAAACTCCT
CAATACAAATGGAAATCATTACCAAGATGCTGGATCTGTAACATCAAATA
ATGatcaaattaaagtttttcaaaaccAAGCCAAACAAGTTATCAATAAA
CCCAAATTGAACCCAGAGCAGTTTTTGGTACTACCGAGAAAGACAAACCC
TAAAACTACAAACTCAATAAATGATAACACTTTAGATCAACTTTCCAGCG
AAGAAATTACCAGAAGATCACAGCCACTAAACCCTGCAATGACATTAGAT
TCAAATCAAATTGGTATTTCAGCACCACTACCGTCGAAGAGGAAATTGTT
GCAACCTGATTCTAGTAATCCTACCAACAATTGTGCTGGAAATATAATTG
GCATGGCAACAAGTGAGATTTCAACATTACAACCTGTTACAAAGCATCGT
CGGAAATCAGAAAACCCAATACGTAGAAAAACGGATAACACGTCAGGACC
ACTGTCATTGGACTCTCCTGGCTTGAGGGTTATGAATGCACAGGCGATAG
ATGCGTTTATAGATTCGTTCGAGATTAAGAAAGAGGTAACATCTGTTATG
AGTGGGGTGGTATCAGACTCGCCTCATTTGCAACTAAACACTTTGAATGG
TAACCATGGTAACATTGAAGAGGTTTTAGATATTGAAATCAAAATCGAAC
CATCAGATCTTTTGATGgatcaattttagttttttgaaacttttggacta
gttttttaaaggtttctgaatttaattttgcaacttATTTGTCTGAAATT
GCTGCCGTCGAGGCAAAAGGTCTAATCTCAGTTTGCTTTCCAAACTTAAA
TTCTAAGATTTGTCCTTTCTTTTAGTGGAGAAGGATCTTATCTACAAGAA
AAAGGGCCAGCCTCACAATTTTAagttagaaaagtaaaaaaataaattcg
atTTTTCCCAGATATTTTGAGATTGGACTTTTTGCCTCGATGATAGCGAA
ATCTGCCCGGATTatatttataattttcattCTGCTATCTTTAAACCTAA
GCTCCTTTGGGTAGATTTCTTCCAAATTCACAGAAATTTGTTGCTAAACT
CTTCGATTCATATCTGAAAAGTTATCTGTGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039184	XLOC_039184	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_369	supercontig	scaffold_369:7363..13544 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.88282	0.126612	1.15279e-08	0.000334843	3.6868e-09	7.99991e-08	0.110464	0.0569631	0.145495	1.33511	1.1856	0.0859354	0.0181181	0.000184153	4.4792e-08	0.247002	3.14433e-08	2.11753e-08	0.0122052	3.08494e-10	0.00828051	0.133385	0.274034	0.205214	0.00374906	0.74177	2.83784e-08	0.000218735	0.0388297	0.0664867

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062527 vs. Swiss-Prot (Human)

BLAST of TCONS_00062527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00062527 (transcript) - C. hemisphaerica