TCONS_00062529 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062529
Unique Name	TCONS_00062529
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4439

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_369:7365..13544+

transcript sequence

>TCONS_00062529 ID=TCONS_00062529|Name=TCONS_00062529|organism=Clytia hemisphaerica|type=transcript|length=4439bp
gaagaaataaataaaaactaaaatcaatTGATTATGGCTAAGCTGCAATA
TAACATGATCATCATTATGCAAGGTGGCATTGGTAATACCAGTCTGCAAG
CAATTTACAGTAACCAGTTGTAAAACAGTAGATGATTGGCAAAAGTTACT
AAAAAGATTGATGATTTTAAACCATTGAAGAATCCAAAGCGAACCCTCTC
AagcattgaaaaaaaacttggaaAGTATGGATAACAAGCATTCCAAGCAT
AATAGTaATGGCATCCTTTTATCTGAATCATCAAATCAATCATGCAATGA
AACTTTGTATGAAAAAGATATAACTTTACAAGATGATTCAGAACAAACTG
ATTCTTGCAATGAAGATTCAAGTTTATCTAGTGACGAAAAAAATAATCTA
GGTCATGATATACCAAGTCATTTATCCAGTCCAGATAACACATCCAATAA
ATTCAATTATATAATGACAATGGAAGAGGTAAATGAGCTTCGTGAATATG
TCATTAGTTTAAGGCAAACCGGTGATGATATTGTTAGTTTAAAAATTGAa
gatattgaaaatgaaagaatttccaAATTCAAAGGTAACAAGAATCCTCA
AAACCAAGGTATCTACCTTTTTCACCAATCTGAAATGCAACAATATCTCC
TCAATAAGTATGGATCTGTTCTgtttatcaaagaaattaaACAAAGACGA
GCAGCagaatcaaataaattaaacaatttttcattgtttttgatttGTGT
ACGGACAAATTTAGATTGTCAAGTTGTTAGCTTGATACTCACAAACCAAT
TATATGGATTTAGCAAGGCTTTGAAGCAAGGCTTGTTAGAACTGCAACTC
AATAATGGACTTTGGCAACCAAAATATCTGATGATTGATCCTTTACAACA
TGTTATTGATGCTGTGCAGGAGGTATTTCCAGgcGTAGCCTTCTTCTTCA
ATCAGAGTGGATGTTTACAGGAGACTGAAGAGTATTTGTCGTTAAATCTG
ATTGAGAATTCTGAAGAAGACACAAAAAAGCTTTTCCTGGATTTAAACCA
AATGCTTGAACGCACAACAAAGAGTGCTGCATTCCTTGACCTAGcaagat
tgaagaaaaagaaggcaACCAATCTGgaagaaaacttaaaatggtTTTCA
ACACATCCAAAGAAGTGGCTTCAAAGTTGTTTTCCAGATGATCTATCTTG
TCTTCTACAATATGATTGGTTGAGAGAAGTTGTAAACTTGTACAGAAGTG
TTTTGATGAAGTTAGGTGCGAGTAGTTATTATGGCATTGTTCCAGTGGTC
AAACAACTTACACAAGAACTTCCTAAGTATTCCTACCAAAGATATGCAAC
CAGGAATCAGAGACATTTCAAGAACAATCAACTTGTGTTAAAGTACCATC
CATCACTTGAGAAGGATTTGGGTTTGCCCCTTTTTATGATTGACCATGTT
AAACAAATTGTTGACGAAATCATCATTGAGGATCAGGTGACAATTGTTGA
GTGTTATGCCCCTCGTAAATTTGAAGTAACCAATCAATCAAATGATAATG
CAGTGCACTTGGTTAATCTTGGTACCCAAACCACTTTTCCATCATGCACT
TGTCTGCAGTGGAAAAATAAACCTTTACCTTGTCAACACATGTTTAAAGT
TTTTGCTGGTAGCCTGTTGGGTTACAAGTTATTTAAACCATACTATAGAT
TGAATTCATATTTCCAGATCGATTATTCTTGTGTAAAAATGGGGATGTTG
TCAACTAAGAGTCATTatgataacattttcaaaaccaaAGATGAGCTTAC
ATCTAAGGGTTTGCCTGAATGTTCGAAGAAGGATCTTATGAGATATGGAT
CGTTgtattttgatgttgattttttCAAGTACTTTTCATATGAACTGGAC
CAATTGCAAGCGCCATGTGTAAAAGTAGGATCTGGTCTATCTAAAGTCTC
CAGAAGTAGCCAAActgtggaaaaatattttagacatTCAAATGTAACTA
ACTCCAAAGAAAGTATACCGAGAGGGTCTGACGGAAGATTTATGAAAAGC
AAACACAAGAATCAAAATCTCTCAAAAGAATGTATCAAGGGGAGTTCCAA
GTCTACTGACAAAAAACCGAAGACAAATCCGACAAAAACTGCAGTAGATG
ATGAAAATTGTACACAAACAAAATCACttagaaatgaaagaaacaatCAA
CCATTATCACGTACTTCTAGACAATGcaaatctttttataaaagTCGAGA
GCAAAAGCAGCGAGCAGATCAAATGGTTAAAGCTCAAAGACTCAAAGAGT
ACAAAGAGTCAATGAAAAAACTTGCACTAAGCAGTGGTTTTTCATGCTAT
CAGAATTCCAATACTTCAAGTAATGAAATCAGTGATATCTCTGCAAATGA
AAaactaaatgaaaaatttccacAATCAATTATGAAGTCTACATTGCTGT
TGAATTCCAAAAATACACAAGCTTCAATTACAAGACCCTCGGCATGTACA
AAGCTAACAATTTCGCACTGTGCTCCTTCTACAGGAAAACAATGTTCAGT
TACTGTTCAAAGCATATCGACTCAAATTAAACCAGCCCAAATTCAACAAG
CTACATCTGAAAATGCAACAACAAAGCAATCACTACCAATTAGTAATAAA
ACAATACCAACTAAAGTTACAGTCTCACCGACCACAGTGCTAGATTCTAT
TCAATCGACAGTGTTGAAAATGTTTGTCCACACAGATCAATCACTTCCGA
TCATACTTCAACCAGCAATAACAAACAATGTCACCCTAACGCAGAAATCA
GTGTCAAAAGCAACTAGTAGTACGATAACACTACCTAAACCCACAGTTCT
AAACAAGATTCAACCAGGAACATCAAATATGATTGCCCGACAAAAACAGC
CAGTACCAATTAATACTCAACCGAAAGTGAGAAAATTCGTCGCACCCAGC
CAATCATTATCTTTAACAACCAAACCCAATGCAGTGCTTCCAAAACAATC
ATTACCAATCATTCAACCATCAACATCAAATAAGATTGTTTCTCCAAAGC
AGCCAGCGATTGTTAAGCCATCCAAAACAGCCAAAACAATCATTGTCCTA
CCAGAATCATTACTTCCAGGGTTTGCATCTAAGGCAAAAGGAATTCTTCC
AATACTGACATCTCCCACTTCAAAAGCAGCGCCTGTTCATACAAAACCAA
ATGAAAAGAATGTCCAGAGCTTGCTTAAGCTCTTAGCTGACAAGGATACC
CCTAAACATGTCTCAAAGAATGCCCCTCATTCGCTTAAAGCTGTTAACGA
CAGTTTCAATGTTGCTGTGAATAAGTTTCACAGTACAATCCCGCCCAAAA
AACTCCTCAATACAAATGGAAATCATTACCAAGATGCTGGATCTGTAACA
TCAAATAATGatcaaattaaagtttttcaaaaccAAGCCAAACAAGTTAT
CAATAAACCCAAATTGAACCCAGAGCAGTTTTTGGTACTACCGAGAAAGA
CAAACCCTAAAACTACAAACTCAATAAATGATAACACTTTAGATCAACTT
TCCAGCGAAGAAATTACCAGAAGATCACAGCCACTAAACCCTGCAATGAC
ATTAGATTCAAATCAAATTGGTATTTCAGCACCACTACCGTCGAAGAGGA
AATTGTTGCAACCTGATTCTAGTAATCCTACCAACAATTGTGCTGGAAAT
ATAATTGGCATGGCAACAAGTGAGATTTCAACATTACAACCTGTTACAAA
GCATCGTCGGAAATCAGAAAACCCAATACGTAGAAAAACGGATAACACGT
CAGGACCACTGTCATTGGACTCTCCTGGCTTGAGGGTTATGAATGCACAG
GCGATAGATGCGTTTATAGATTCGTTCGAGATTAAGAAAGAGGTAACATC
TGTTATGAGTGGGGTGGTATCAGACTCGCCTCATTTGCAACTAAACACTT
TGAATGGTAACCATGGTAACATTGAAGAGGTTTTAGATATTGAAATCAAA
ATCGAACCATCAGATCTTTTGATGgatcaattttagttttttgaaacttt
tggactagttttttaaaggtttctgaatttaattttgcaacttATTTGTC
TGAAATTGCTGCCGTCGAGGCAAAAGGTCTAATCTCAGTTTGCTTTCCAA
ACTTAAATTCTAAGATTTGTCCTTTCTTTTAGTGGAGAAGGATCTTATCT
ACAAGAAAAAGGGCCAGCCTCACAATTTTAagttagaaaagtaaaaaaat
aaattcgatTTTTCCCAGATATTTTGAGATTGGACTTTTTGCCTCGATGA
TAGCGAAATCTGCCCGGATTatatttataattttcattCTGCTATCTTTA
AACCTAAGCTCCTTTGGGTAGATTTCTTCCAAATTCACAGAAATTTGTTG
CTAAACTCTTCGATTCATATCTGAAAAGTTATCTGTGTT

Run BLAST on NCBI

transcript from alignment at scaffold_369:7365..13544+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062529 ID=TCONS_00062529|Name=TCONS_00062529|organism=Clytia hemisphaerica|type=transcript|length=6180bp|location=Sequence derived from alignment at scaffold_369:7365..13544+ (Clytia hemisphaerica)
gaagaaataaataaaaactaaaatcaatTGATTATGGCTAAGCTGCAATA
TAACATGATCATCATTATGCAAGGTGGCATTGGTAATACCAGTCTGCAAG
CAATTTACAGTAACCAGTTGTAAAACAGTAGATGATTGGCAAAAGTTACT
AAAAAGGCTGGTGTGGTAATTACACAACCATTTCAAAAGTTTCTcaatgt
catttttttctagCACATTGGTCAGTAAAACAAGCAGCTAGGTTTATTAA
TGCCATACCAATATTTGTCTAATTTCCAGGTACTTAAAATTACTTGGAAG
TCATATATTTGTTTAGTTCTTAAATAATTAATAAATGTGTCtacaatgaa
aatattttcattgttttactGGGGCTGTAGATTGTTCAATAGGTGCCTGC
CTGCCTGTCTGTCTATTATGATTATTGATGTTAAATTTGACTTTACTTTG
GTTATCCTTTCATTCCATTTCAAGATTGATGATTTTAAACCATTGAAGAA
TCCAAAGCGAACCCTCTCAagcattgaaaaaaaacttggaaAGTATGGAT
AACAAGCATTCCAAGCATAATAGTGTAAGGTTTTAACTAAGTTATCTTTc
tgtaatatttttaaattttgggagAGTATGTATGGCAGGAGGTAATTTAC
TGATTTTTCACCTTgaatacatttttctttttccttttagaATGGCATCC
TTTTATCTGAATCATCAAATCAATCATGCAATGAAACTTTGTATGAAAAA
GATATAACTTTACAAGATGATTCAGAACAAACTGATTCTTGCAATGAAGA
TTCAAGTTTATCTAGTGACGAAAAAAATAATCTAGGTCATGATATACCAA
GTCATTTATCCAGTCCAGATAACACATCCAATAAATTCAATTATATAATG
ACAATGGAAGAGGTAAATGAGCTTCGTGAATATGTCATTAGTTTAAGGCA
AACCGGTGATGATATTGTTAGTTTAAAAATTGAagatattgaaaatgaaa
gaatttccaAATTCAAAGGTAACAAGAATCCTCAAAACCAAGGTATCTAC
CTTTTTCACCAATCTGAAATGCAACAATATCTCCTCAATAAGTATGGATC
TGTTCTgtttatcaaagaaattaaACAAAGACGAGCAGCagaatcaaata
aattaaacaatttttcattgtttttgatttGTGTACGGACAAATTTAGAT
TGTCAAGTTGTTAGCTTGATACTCACAAACCAATTATATGGATTTAGCAA
GGCTTTGAAGCAAGGCTTGTTAGAACTGCAACTCAATAATGGACTTTGGC
AACCAAAATATCTGATGATTGATCCTTTACAACATGTTATTGATGCTGTG
CAGGAGGTATTTCCAGGTTTGTTTCTCACACAGGCTCTCTTCTTTTACCN
TATCTGATGATTGATCCTTTACAACATGTTATTGATGCTGTGCAGGAGGT
ATTTCCAGGTTTGTTTCTCACACAGGCTCTCTTCTTTTACCTATTATATA
CAAATATTAGACAGTACTTAACTATATATTGTGTAAAAGCCATAATGGCT
AAAAATAAAGTtaacatattcttcaaaaagagGTGTTAAAAGAGGACAGT
AGTAAATGTCTTCTTCTATAGGGTGTGaataattaatttattttttttaa
attcaggcGTAGCCTTCTTCTTCAATCAGAGTGGATGTTTACAGGAGACT
GAAGAGTATTTGTCGTTAAATCTGATTGAGAATTCTGAAGAAGACACAAA
AAAGCTTTTCCTGGATTTAAACCAAATGCTTGAACGCACAACAAAGAGTG
CTGCATTCCTTGACCTAGcaagattgaagaaaaagaaggcaACCAATCTG
gaagaaaacttaaaatggtTTTCAACACATCCAAAGGTTAGCTCTATTAT
GTACAAGGGTACTTATTACGAATGTGAATTACAgtatgtaaaaattaaaa
atcaccAGGACGggataaaaaacattttatattaacaaaaccgaaaaaaa
atgctttttagtTAATTTTCACCACAAGACTATCACTTAGTTAAGTCCTA
AGGCAACTACTTTTTTTTCTGGTTTAAGGAATGACTGATgctttttttac
taaaattaaaaaaaaaaaatatttttcattgtttttcaaaCCCTGTCTGA
TCTGCCATAAATggcaaattttaaagaaaacttcagTTTATAAGAGCAGG
AAATCAGGGAAACGTGTTAGTGGAgctctttttttctcaatttgctTACC
TGGTTGTCACTTCAACACAAATACTCTactgaaaaacatttttcgatttA
TTGGTATGTAATTTGTAGGTTTACTCAAACCACCtttcatattatttttt
aaacactaaattaaaaaaaaaattattttatttatttccatCCTTTCCAN
TATTTTTTAAacactaaattaaaaaaaaaattattttatttatttccatC
CTCTGGTCCAAaaaccagaaaatgaaaaaagaaatacttgcctaaagaaa
taatatttaaattacattttgaagaaaaataaggTGTTGTCCTTATTGAT
TTTTATAGAAGTGGCTTCAAAGTTGTTTTCCAGATGATCTATCTTGTCTT
CTACAATATGATTGGTTGAGAGAAGTTGTAAACTTGTACAGAAGTGTTTT
GATGAAGTTAGGTGCGAGTAGTTATTATGGCATTGTTCCAGTGGTCAAAC
AACTTACACAAGAACTTCCTAAGTATTCCTACCAAAGGTAAAATTTATTC
CCTTTTAAGCTCGCCCCATTCTTGTTCATCTTTTCAAATTCTTCTTTGCT
TTTCAGTGCAGAAAGTTATCATATTAGAATTTCAAATGTTAAGGAAAAGG
GCAAAGGCAAATAAAgcgctattcatgatatgcaccactgcgaTGACTTC
Accaaattatgcaacttttctgtttttgttccacccaatacgtcactttt
tcaattgTTTAATTGACGtactgggtggaaaattttaaacgttttcagaa
gactctccagtggtgcattgAAATTACTATTCAAAGTTAACTAGACTGTT
CGTTTTGATTATAACAACCCTGATTAATTTAGATATGCAACCAGGAATCA
GAGACATTTCAAGAACAATCAACTTGTGTTAAAGTACCATCCATCACTTG
AGAAGGATTTGGGTTTGCCCCTTTTTATGATTGACCATGTTAAACAAATT
GTTGACGAAATCATCATTGAGGATCAGGTGACAATTGTTGAGTGTTATGC
CCCTCGTAAATTTGAAGTAACCAATCAATCAAATGATAATGCAGTGCACT
TGGTTAATCTTGGTACCCAAACCACTTTTCCATCATGCACTTGTCTGCAG
TGGAAAAATAAACCTTTACCTTGTCAACACATGTTTAAAGTTTTTGCTGG
TAGCCTGTTGGGTTACAAGTTATTTAAACCATACTATAGATTGAATTCAT
ATTTCCAGATCGATTATTCTTGTGTAAAAATGGGGATGTTGTCAACTAAG
AGTCATTatgataacattttcaaaaccaaAGATGAGCTTACATCTAAGGG
TTTGCCTGAATGTTCGAAGAAGGATCTTATGAGATATGGATCGTTgtatt
ttgatgttgattttttCAAGTACTTTTCATATGAACTGGACCAATTGCAA
GCGCCATGTGTAAAAGTAGGATCTGGTCTATCTAAAGTCTCCAGAAGTAG
CCAAActgtggaaaaatattttagacatTCAAATGTAACTAACTCCAAAG
AAAGTATACCGAGAGGGTCTGACGGAAGATTTATGAAAAGCAAACACAAG
AATCAAAATCTCTCAAAAGAATGTATCAAGGGGAGTTCCAAGTCTACTGA
CAAAAAACCGAAGACAAATCCGACAAAAACTGCAGTAGATGATGAAAATT
GTACACAAACAAAATCACttagaaatgaaagaaacaatCAACCATTATCA
CGTACTTCTAGACAATGcaaatctttttataaaagTCGAGAGCAAAAGCA
GCGAGCAGATCAAATGGTTAAAGCTCAAAGACTCAAAGAGTACAAAGAGT
CAATGAAAAAACTTGCACTAAGCAGTGGTTTTTCATGCTATCAGAATTCC
AATACTTCAAGTAATGAAATCAGTGATATCTCTGCAAATGAAAaactaaa
tgaaaaatttccacAATCAATTATGAAGTCTACATTGCTGTTGAATTCCA
AAAATACACAAGCTTCAATTACAAGACCCTCGGCATGTACAAAGCTAACA
ATTTCGCACTGTGCTCCTTCTACAGGAAAACAATGTTCAGTTACTGTTCA
AAGCATATCGACTCAAATTAAACCAGCCCAAATTCAACAAGCTACATCTG
AAAATGCAACAACAAAGCAATCACTACCAATTAGTAATAAAACAATACCA
ACTAAAGTTACAGTCTCACCGACCACAGTGCTAGATTCTATTCAATCGAC
AGTGTTGAAAATGTTTGTCCACACAGATCAATCACTTCCGATCATACTTC
AACCAGCAATAACAAACAATGTCACCCTAACGCAGAAATCAGTGTCAAAA
GCAACTAGTAGTACGATAACACTACCTAAACCCACAGTTCTAAACAAGAT
TCAACCAGGAACATCAAATATGATTGCCCGACAAAAACAGCCAGTACCAA
TTAATACTCAACCGAAAGTGAGAAAATTCGTCGCACCCAGCCAATCATTA
TCTTTAACAACCAAACCCAATGCAGTGCTTCCAAAACAATCATTACCAAT
CATTCAACCATCAACATCAAATAAGATTGTTTCTCCAAAGCAGCCAGCGA
TTGTTAAGCCATCCAAAACAGCCAAAACAATCATTGTCCTACCAGAATCA
TTACTTCCAGGGTTTGCATCTAAGGCAAAAGGAATTCTTCCAATACTGAC
ATCTCCCACTTCAAAAGCAGCGCCTGTTCATACAAAACCAAATGAAAAGA
ATGTCCAGAGCTTGCTTAAGCTCTTAGCTGACAAGGATACCCCTAAACAT
GTCTCAAAGAATGCCCCTCATTCGCTTAAAGCTGTTAACGACAGTTTCAA
TGTTGCTGTGAATAAGTTTCACAGTACAATCCCGCCCAAAAAACTCCTCA
ATACAAATGGAAATCATTACCAAGATGCTGGATCTGTAACATCAAATAAT
GatcaaattaaagtttttcaaaaccAAGCCAAACAAGTTATCAATAAACC
CAAATTGAACCCAGAGCAGTTTTTGGTACTACCGAGAAAGACAAACCCTA
AAACTACAAACTCAATAAATGATAACACTTTAGATCAACTTTCCAGCGAA
GAAATTACCAGAAGATCACAGCCACTAAACCCTGCAATGACATTAGATTC
AAATCAAATTGGTATTTCAGCACCACTACCGTCGAAGAGGAAATTGTTGC
AACCTGATTCTAGTAATCCTACCAACAATTGTGCTGGAAATATAATTGGC
ATGGCAACAAGTGAGATTTCAACATTACAACCTGTTACAAAGCATCGTCG
GAAATCAGAAAACCCAATACGTAGAAAAACGGATAACACGTCAGGACCAC
TGTCATTGGACTCTCCTGGCTTGAGGGTTATGAATGCACAGGCGATAGAT
GCGTTTATAGATTCGTTCGAGATTAAGAAAGAGGTAACATCTGTTATGAG
TGGGGTGGTATCAGACTCGCCTCATTTGCAACTAAACACTTTGAATGGTA
ACCATGGTAACATTGAAGAGGTTTTAGATATTGAAATCAAAATCGAACCA
TCAGATCTTTTGATGgatcaattttagttttttgaaacttttggactagt
tttttaaaggtttctgaatttaattttgcaacttATTTGTCTGAAATTGC
TGCCGTCGAGGCAAAAGGTCTAATCTCAGTTTGCTTTCCAAACTTAAATT
CTAAGATTTGTCCTTTCTTTTAGTGGAGAAGGATCTTATCTACAAGAAAA
AGGGCCAGCCTCACAATTTTAagttagaaaagtaaaaaaataaattcgat
TTTTCCCAGATATTTTGAGATTGGACTTTTTGCCTCGATGATAGCGAAAT
CTGCCCGGATTatatttataattttcattCTGCTATCTTTAAACCTAAGC
TCCTTTGGGTAGATTTCTTCCAAATTCACAGAAATTTGTTGCTAAACTCT
TCGATTCATATCTGAAAAGTTATCTGTGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039184	XLOC_039184	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_369	supercontig	scaffold_369:7365..13544 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.68566e-10	0.357302	0.000926199	1.76135e-05	0.22322	2.71865	0.00549418	0.0210486	0.836177	2.4823e-08	0.348298	0.564243	0.000179118	1.08903	0.966091	3.99684e-08	2.20394	0.823268	0.213299	0.442859	0.00388499	1.10281e-07	4.37288e-08	4.67236e-08	0.106889	0.000128439	0.000205558	6.19584e-05	0.689902	8.05414e-09

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062529 vs. Swiss-Prot (Human)

BLAST of TCONS_00062529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00062529 (transcript) - C. hemisphaerica