TCONS_00062579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062579
Unique NameTCONS_00062579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062579 ID=TCONS_00062579|Name=TCONS_00062579|organism=Clytia hemisphaerica|type=transcript|length=468bp
CACGTctccaaaaattcaaaagagtAAAAGGATCGTCACAGTTCCATGTC
ATTGTATTTTCCCCTGGTGCCACCACTCTAAAAGCAGCAAAACGTATTTG
TGTCTGTGAAAAGTGCAAAGATTCTTTCGGGACATGTGAAAACTTTGTAG
ACTATACCTTGAATGTTGAAGAGTTAAACAAAACCCATTTGCGATCAAGT
AAAGCTCAGCCAGTTTGTCAGAAGAAGCAAGACGACAGTGATGAGAGTGG
ATCAGATAGTGACGATGAAGATGATGTTGTTGAAAAGGAGGATAAAGGTG
ACAGTCAGACTGCACGTGATTTTATCTCTCCAAACTCAATTGTAGCAGTT
GCTGCTGCTGAAAAATCTGTTGATACAATATGGTTCATAAAGGTCCTGGA
GAATGAATGTCTTGAAAGTGATGATGTGAAAGATGATTACGGAAATATAG
TTTTGAAAGGCGAATCAT
Run BLAST on NCBI

protein sequence of TCONS_00062579-protein

>TCONS_00062579-protein ID=TCONS_00062579-protein|Name=TCONS_00062579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
RLQKFKRVKGSSQFHVIVFSPGATTLKAAKRICVCEKCKDSFGTCENFVD
YTLNVEELNKTHLRSSKAQPVCQKKQDDSDESGSDSDDEDDVVEKEDKGD
SQTARDFISPNSIVAVAAAEKSVDTIWFIKVLENECLESDDVKDDYGNIV
LKGES
Run BLAST on NCBI

transcript from alignment at scaffold_369:54102..54569

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062579 ID=TCONS_00062579|Name=TCONS_00062579|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at scaffold_369:54102..54569 (Clytia hemisphaerica)
ATGATTCGCCTTTCAAAACTATATTTCCGTAATCATCTTTCACATCATCA
CTTTCAAGACATTCATTCTCCAGGACCTTTATGAACCATATTGTATCAAC
AGATTTTTCAGCAGCAGCAACTGCTACAATTGAGTTTGGAGAGATAAAAT
CACGTGCAGTCTGACTGTCACCTTTATCCTCCTTTTCAACAACATCATCT
TCATCGTCACTATCTGATCCACTCTCATCACTGTCGTCTTGCTTCTTCTG
ACAAACTGGCTGAGCTTTACTTGATCGCAAATGGGTTTTGTTTAACTCTT
CAACATTCAAGGTATAGTCTACAAAGTTTTCACATGTCCCGAAAGAATCT
TTGCACTTTTCACAGACACAAATACGTTTTGCTGCTTTTAGAGTGGTGGC
ACCAGGGGAAAATACAATGACATGGAACTGTGACGATCCTTTTactcttt
tgaatttttggagACGTG

Coding sequence (CDS) from alignment at scaffold_369:54102..54569

>TCONS_00062579 ID=TCONS_00062579|Name=TCONS_00062579|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_369:54102..54569 (Clytia hemisphaerica)
TGATTCGCCTTTCAAAACTATATTTCCGTAATCATCTTTCACATCATCAC
TTTCAAGACATTCATTCTCCAGGACCTTTATGAACCATATTGTATCAACA
GATTTTTCAGCAGCAGCAACTGCTACAATTGAGTTTGGAGAGATAAAATC
ACGTGCAGTCTGACTGTCACCTTTATCCTCCTTTTCAACAACATCATCTT
CATCGTCACTATCTGATCCACTCTCATCACTGTCGTCTTGCTTCTTCTGA
CAAACTGGCTGAGCTTTACTTGATCGCAAATGGGTTTTGTTTAACTCTTC
AACATTCAAGGTATAGTCTACAAAGTTTTCACATGTCCCGAAAGAATCTT
TGCACTTTTCACAGACACAAATACGTTTTGCTGCTTTTAGAGTGGTGGCA
CCAGGGGAAAATACAATGACATGGAACTGTGACGATCCTTTTactctttt
gaatttttggagACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039208XLOC_039208Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062579-proteinTCONS_00062579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062579-exon-scaffold_369-1491911889:54102..54569TCONS_00062579-exon-scaffold_369-1491911889:54102..54569Clytia hemisphaericaexon
TCONS_00062579-exon-scaffold_369-1510915933:54102..54569TCONS_00062579-exon-scaffold_369-1510915933:54102..54569Clytia hemisphaericaexon
TCONS_00062579-exon-scaffold_369-1575043694:54102..54569TCONS_00062579-exon-scaffold_369-1575043694:54102..54569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:54102..54569 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13698	0	0.310191	0.303473	5.54174	3.06541	3.52218	2.63794	1.73145	1.85873	0.416336	0.912277	1.27541	1.60836	0.311126	0	0.20566	0.632385	0.58245	1.06661	0.397319	0.968992	0.157058	0.285577	4.41207	3.67516	0.563479	0.60136	0.45611	0.309803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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