Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062573 ID=TCONS_00062573|Name=TCONS_00062573|organism=Clytia hemisphaerica|type=transcript|length=1011bp AACGTATCATCCAATATGGCTCCGGTGTTGTTACTTCGCCTGACAGTGTT CTTGTTAACATACCCAGTGCTGGCTATCTCAATCAACAAAAACTGCACAA CATGGTTTACCGGGGAAAATGTTTTATCCAGTAATTTGAACACAATACCT CTGGGTTGGTACATACCACCTTTCACCCTCAAATCAGCAGATGTTTTCGA GGAAATGATACATATTTTGAACACGAAGCAGTTTAAAGAAGGTGGACAGC ACCATGACTGCATGGACTATCTGACAAATGACGTGACAACAAAAACATCT TCATTCCTTCAAAACCTTCTTAAACAAACACACTCTTCCAAGATGGCGCT TATCACCAATAACAATAAAGCTTATCACAGCACAACAGCAAACATCATCG ATAAGTTGACCAATATTGAAGTATCAGAATTCAGTGTCGGTACACTTAAT GACACCATCTTGAATAATTTCTTCAACACTATTTTACAATTGCAAGCTCA CACTGTCTTATTACTGATCGAAGAAGCCGACTGGGAAATAGTGAAGAAAT TTCTTTCagaaagtgtgaacaatgatgTCTTTTAGATTCGTCTCTCCTTT TCGAAGAATGATACTGAAGCACACAACGATGGAGTGACTTGTTCGTATGA ACTCTCCATCACAGATCTTCTTGTCGGAAGCAATATCAGTTCAGTTATAC TGAGCAACAAGAGAACGAACAGAAAATAATCGATGCCATGAAACACAAGA AAACACGATGTTCCAAGAAGTACAAATCGATCATTCGAGCCGTCAGTATC ATTGATTCACCTTACCTCGTTGAAACTCCTCATGAAGTGTCAGAGTTTGG AAATACTGTGTGCAAAGAAGGTTCATTTCCATGTCGTAAAGCTACTGACG ATGTTGGTAATTCCTGGGTGATTCGTTGCTGCGCAGGGTATGTGATTGAT GTAGCTGAAATGATGTTTGATTATTTGGGGTATGATTGGACTTTGTATTT GGTACCTGATG Run BLAST on NCBI transcript from alignment at scaffold_369:143041..145846- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062573 ID=TCONS_00062573|Name=TCONS_00062573|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_369:143041..145846- (Clytia hemisphaerica) AACGTATCATCCAATATGGCTCCGGTGTTGTTACTTCGCCTGACAGTGTT
CTTGTTAACATACCCAGTGCTGGCTATCTCAATCAACAAAAACTGCACAA
CATGGTTTACCGGGGAAAATGTTTTATCCAGTAATTTGAACACAATACCT
CTGGGTTGGTACATACCACCTTTCACCCTCAAATCAGCAGATGTTTTCGA
GGAAATGATACATATTTTGAACACGAAGCAGTTTAAAGAAGGTGGACAGG
TAGGAAAATATCTACATATTTTGAGACATGTTGAAAGAAACATGTTTGTT
GTTTGAATATAATGATTTGGGTTTTGCTACTGCGCAGAGCAAAAAGGTGT
GGTATTGACCCTTAAAAAAATTATATTCCTTCTCCTTGACAGCAATATAG
AATGTTATCATTTTCTAACGGATGACTATTTTATCCCTGCTTTACTAATT
TTTTGGACCTACCTCCGGATACCCCGGTGGAGGTCCTTTAAATTAACCAA
TGTTCGTCCGTCCGTTCGTTCGTCTGTTACCAGCTTTTCTCGGGATTGGC
TCATTACTTTTTTCTGTTTTTTGGCACAATGATGCAAAATGATGATTTCT
AAAGAGTAACGGAGCCCGATTTTCGAAATATGCCGGAAAATTTGGTATTT
TTTCGAGATTTTATCATTAGTTCTTTCTGATTTTTTGCTCAAAGATGCGT
ATTAACAATGCCCAAAACATTGCCGAGTGTGATTTTTGAGAAAATCTTTT
TCCGGCCGAAAATGCCGGAAATATAACGGAAATCGCCGTTTTTCTGGATT
TTCATTGGACCTTTTCCTTATAATATTAATAGCAATGCCCACCATCGAAG
CATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTATTCAAA
AATCGCTGGAACAACCTATTTTCGCCGGAAAGACTTGAATATTTTCGACT
TGAATTTCTCGAGCTGTACTTTGTATTTTTTTATGAAATTTTGCACACTG
ATGCAAAATGACAATACCTAAAATGTGACGGAGCCCGATATGTTTTTCAC
ACAAAAACATTATTGATAACAATGCTCACCATCAAGCATGATTCAATGGT
CAATAAAACTGATTTTTGCAACCAGAACTTTCTATTTATTTTTTCCTACA
GCCCTTCCCTCTCCCCCCATCAACAATCAATGATGAATTTATTGCGTTAT
GCATTTTCACTAAACGCTATATTTTCTTTTTCATTTTTCTCCTCGCATTG
CTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTCA
ACCTGACTTTTAGAAAGTTCTGGCTATGACAAAACTACACCCAGTATTTA
TTTTCAACTTTATTCTTTCCAAAGCACCATGACTGCATGGACTATCTGAC
AAATGACGTGACAACAAAAACATCTTCATTCCTTCAAAACCTTCTTAAAC
AAACACACTCTTCCAAGATGGCGCTTATCACCAATAACAATAAAGCTTAT
CACAGCACAACAGCAAACATCATCGATAAGTTGACCAATATTGAAGTATC
AGAATTCAGTGTCGGTACACTTAATGACACCATCTTGAATAATTTCTTCA
ACACTATTTTACAATTGCAAGCTCACACTGTCTTATTACTGATCGAAGAA
GCCGACTGGGAAATAGTGAAGAAATTTCTTTCAGAAAGTGTGAACAATGA
TGTCTTTTAGATTCGTCTCTCCTTTTCGAAGAATGATACTGAAGCACACA
ACGATGGAGTGACTTGTTCGTATGAACTCTCCATCACAGATCTTCTTGTC
GGAAGCAATATCAGGTATACATGTTTTGTTCTTTGTACTTATTTGTGATA
GGTTAACATAAATACAAAGGCTTTTCCATTGAAGACTTAATTACAGTAAT
CACTCGAGGGAAAATCAATTGAGGTCAAATCCCTCTAGTACTAACTAACT
ATCATTGTATATTCAAATCTTTCTGTGATTCGAGGTAAAATATCGGCCTC
TTAGCTCGAAAAAACTCGTTGGCTAATTTGGAGAGATTTCTTGGTCCCAC
CTACAATCAAAATTATAATATTAGGGGGATTCCCTTCAAAATTGTGGACA
CAACAACTCATTTTTAAGTGCTTTAACTAAAGCCAAACGACCTTCCGATC
TCAGGATAAAAAAGCTTAAAAAGTTCCATTAAGGCTGAGTATCAAGTCTG
GAAACCATACTAAAACCCTCCAAAATAAAGTGAAAGTACTGAAATAGGAA
CAACTGCAATTTCTTCTTCAGTTATACTGAGCAACAAGAGAACGAACAGA
AAATAATCGATGCCATGAAACACAAGAAAACACGATGTTCCAAGAAGTAC
AAATCGATCATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGA
AACTCCTCATGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTT
CATTTCCATGTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATT
CGTTGCTGCGCAGGTTAGTAGTGTTGTTCGCCTCACACATTTATTATGTA
GTTTTTTGTTTAAGGTTCAAATGTATCGCCCAGTCAACTCTTTACTCTAA
GATACCGAATAAAGGGGAAGGTACCTCCAAAATTATAAGCTAAAACCAGC
AGTGAATAAACGGGGAGGGAGGTAAGATAACCAGCCAGTCTAGTAAAATT
TTAATTCATCTCTTTCTACTTTACTTTCCAGGGTATGTGATTGATGTAGC
TGAAATGATGTTTGATTATTTGGGGTATGATTGGACTTTGTATTTGGTAC
CTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062573-exon-scaffold_369-1575043694:145598..145846 | TCONS_00062573-exon-scaffold_369-1575043694:145598..145846 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1575043694:144033..144472 | TCONS_00062573-exon-scaffold_369-1575043694:144033..144472 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1575043694:143334..143580 | TCONS_00062573-exon-scaffold_369-1575043694:143334..143580 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1575043694:143041..143115 | TCONS_00062573-exon-scaffold_369-1575043694:143041..143115 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1510915933:145598..145846 | TCONS_00062573-exon-scaffold_369-1510915933:145598..145846 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1510915933:144033..144472 | TCONS_00062573-exon-scaffold_369-1510915933:144033..144472 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1510915933:143334..143580 | TCONS_00062573-exon-scaffold_369-1510915933:143334..143580 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1510915933:143041..143115 | TCONS_00062573-exon-scaffold_369-1510915933:143041..143115 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1491911889:145598..145846 | TCONS_00062573-exon-scaffold_369-1491911889:145598..145846 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1491911889:144033..144472 | TCONS_00062573-exon-scaffold_369-1491911889:144033..144472 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1491911889:143334..143580 | TCONS_00062573-exon-scaffold_369-1491911889:143334..143580 | Clytia hemisphaerica | exon |
TCONS_00062573-exon-scaffold_369-1491911889:143041..143115 | TCONS_00062573-exon-scaffold_369-1491911889:143041..143115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_369 | supercontig | scaffold_369:143041..145846 - |
Blast
The following BLAST results are available for this feature:
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