TCONS_00062586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062586
Unique NameTCONS_00062586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062586 ID=TCONS_00062586|Name=TCONS_00062586|organism=Clytia hemisphaerica|type=transcript|length=777bp
aatctGTACTTGTGGTCTGAAACACCTTGAACATTGATTGAGTGATAGCT
TTTGCGATTTACATAATCTCTCTCATCTTCATTGGGGCATGAGATTCTAA
CATGGGTACAATCAATACAACCAACCACACTAGGGAAACCAGACATCTCA
TAAAAGCCCTGTTTTATGATTCTCTTTTCCTCGTTTGTTGTCGGaaattt
tataaattgtcttttttttgcattcaaTGCTTGGCAGAATTTTGGGATCA
CTCGGCAAACTGTGGATTTGTCAACTCCTATACTGTCTCCAACCACTTGT
TGGAAGCTCCCACAGGCAAAAAACCTGAGAGCAATCAAAACTTGGGTCTC
CACCGACAATGCATGATTTCTTCTTGTTGGTCTCACTAAGTCATTTCGCA
GCAAATTAGCCAAAAAAGCAATGCCTTGTCGtgaaaatcgaaatctattT
CTTATTTCTTCGTTAGAGAAGGTGTTGTCTATCAAAATATTCCTCAGACG
ATACGTTCTTCGTCTTCTTCAATTATTTCCTCCAATGTTTCCATATAAAG
GTGTTGATTCATAACATTCGCCatctttcttgtttttattcttAATCTGC
TCTTAATCCTGCTATGGAGCAGGATTAAGGCTTGCTTGGAGCCGCTAAGG
CTCTTAATCTGGATTTAATCTTTTCTTAATCACGATTAAGTTCGTGAGTT
TCGAACAACCGCTTAATCGGCGCTAATCGCAATTTAATCCGGGATTAAGC
TAATCCGGCCTTAATCGCTTTTTGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_369:360337..361113

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062586 ID=TCONS_00062586|Name=TCONS_00062586|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_369:360337..361113 (Clytia hemisphaerica)
GTTCAAAAAGCGATTAAGGCCGGATTAGCTTAATCCCGGATTAAATTGCG
ATTAGCGCCGATTAAGCGGTTGTTCGAAACTCACGAACTTAATCGTGATT
AAGAAAAGATTAAATCCAGATTAAGAGCCTTAGCGGCTCCAAGCAAGCCT
TAATCCTGCTCCATAGCAGGATTAAGAGCAGATTaagaataaaaacaaga
aagatGGCGAATGTTATGAATCAACACCTTTATATGGAAACATTGGAGGA
AATAATTGAAGAAGACGAAGAACGTATCGTCTGAGGAATATTTTGATAGA
CAACACCTTCTCTAACGAAGAAATAAGAaatagatttcgattttcaCGAC
AAGGCATTGCTTTTTTGGCTAATTTGCTGCGAAATGACTTAGTGAGACCA
ACAAGAAGAAATCATGCATTGTCGGTGGAGACCCAAGTTTTGATTGCTCT
CAGGTTTTTTGCCTGTGGGAGCTTCCAACAAGTGGTTGGAGACAGTATAG
GAGTTGACAAATCCACAGTTTGCCGAGTGATCCCAAAATTCTGCCAAGCA
ttgaatgcaaaaaaaagacaatttataaaatttCCGACAACAAACGAGGA
AAAGAGAATCATAAAACAGGGCTTTTATGAGATGTCTGGTTTCCCTAGTG
TGGTTGGTTGTATTGATTGTACCCATGTTAGAATCTCATGCCCCAATGAA
GATGAGAGAGATTATGTAAATCGCAAAAGCTATCACTCAATCAATGTTCA
AGGTGTTTCAGACCACAAGTACagatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039215XLOC_039215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062586-exon-scaffold_369-1491911889:360337..361113TCONS_00062586-exon-scaffold_369-1491911889:360337..361113Clytia hemisphaericaexon
TCONS_00062586-exon-scaffold_369-1510915933:360337..361113TCONS_00062586-exon-scaffold_369-1510915933:360337..361113Clytia hemisphaericaexon
TCONS_00062586-exon-scaffold_369-1575043694:360337..361113TCONS_00062586-exon-scaffold_369-1575043694:360337..361113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:360337..361113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.548182	0.353607	0.207569	6.57009	5.99051	7.5485	12.4045	7.91527	8.05459	7.21195	10.476	8.97424	9.18449	0.283739	0.115289	0.187556	0.240299	0.0663972	0.20844	0	0	0.0716163	0.130219	1.14004	4.18955	0.0856462	0	0	0
Blast
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BLAST of TCONS_00062586 vs. Swiss-Prot (Human)
Match: HARB1 (Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.281e-37
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = -2 
Query:   15 SNEEIRNRFRFSRQGIAFLANLLRNDLVRPTRRNHALSVETQVLIALRFFACGSFQQVVGDSIGVDKSTVCRVIPKFCQALNAKKRQFIKFPTTNEEKRIIKQGFYEMSGFPSVVGCIDCTHVRISCPNEDERDYVNRKSYHSINVQGVSD 467
            ++E + + + F RQ I +L  LL  +L RPT+R+ A+S ETQVL AL F+  GSFQ  +GD+IG+ ++++ R +    +AL  +  QFI+FP      + +K  FY ++G P V+G +DC HV I  PN ++  YVNRK  HS+N   V D
Sbjct:   31 TDEYLMSMYGFPRQFIYYLVELLGANLSRPTQRSRAISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCD 181
The following BLAST results are available for this feature:
BLAST of TCONS_00062586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HARB14.281e-3741.72Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1... [more]
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