Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062636 ID=TCONS_00062636|Name=TCONS_00062636|organism=Clytia hemisphaerica|type=transcript|length=715bp CTTTGCtctattctcttttttttattattattatttttattattgttatt atttgatttgattttttttgttaaacCCACAACCTTTCTATAACTTATAA GAACTTTTTGTCCAATCCCCCTACTCTGACCTATCTATTTACAACCCATG CCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCCAGTAGCTAAGAACCA CCGTGCGATCCAGTGTGACAACTGCTCCTATTGGGTACACATTAAATGCA ACAATACCACAGACAATGACTATACCAAACTCATATCATCAGATGAAACA TGGTCATGCCTCAAATGCATCCAGACAGCAATACCATTTCTTCAGTCCTC TGATGAAGAACTCAAGCTACTCACCCAAGGTAATAATGCTCCCCATGTCA CAAGAAACAAGCAACTGTCAATCACCAGAACAAAGACGGTAATGTATGGA TCGCACAACATAGCTAATCTTATCACCAAAGACTGGAATGAAATCCACCC CCATCTACCTTCCCTTGACCAAATTACCAGCAAATCCACTTTCAAGGCCC ACCTTCATGCTTACCTTCTCACTAAACTTGCCTCAAGTTAAATCCCTTCC CTGACTCCCAAGGTTTCTTTGTAGATgtatatattattatttttattatc attGTTATTATCACTATTACCtttttttcctttgtttcttATTTTGAATT ATTCCCCAATTATAT Run BLAST on NCBI protein sequence of TCONS_00062636-protein >TCONS_00062636-protein ID=TCONS_00062636-protein|Name=TCONS_00062636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MPVKFPCGICKKPVAKNHRAIQCDNCSYWVHIKCNNTTDNDYTKLISSDE TWSCLKCIQTAIPFLQSSDEELKLLTQGNNAPHVTRNKQLSITRTKTVMY GSHNIANLITKDWNEIHPHLPSLDQITSKSTFKAHLHAYLLTKLASS Run BLAST on NCBI transcript from alignment at scaffold_370:22926..26124- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062636 ID=TCONS_00062636|Name=TCONS_00062636|organism=Clytia hemisphaerica|type=transcript|length=3199bp|location=Sequence derived from alignment at scaffold_370:22926..26124- (Clytia hemisphaerica) CTTTGCTCTATTCTCTTTTTTTTATTATTATTATTTTTATTATTGTTATT
ATTTGATTTGATTTTTTTTGTTAAACCCACAACCTTTCTATAACTTATAA
GAACTTTTTGTCCAATCCCCCTACTCTGACCTATCTATTTACAACCCATG
CCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCCAGTAGCTAAGAACCA
CCGTGCGATCCAGTGTGACAACTGCTCCTATTGGGTACACATTAAATGCA
ACAATACCACAGACAATGACTATACCAAACTCATATCATCAGATGAAACA
TGGTCATGCCTCAAATGCATCCAGACAGCAATACCATTTCTTCAGTCCTC
TGATGAAGAACTCAAGCTACTCACCCAAGGTAAGTCTGCTTCTGATCTTG
ACCTATTTGACCCTGATGTGAATATTAATGTCCAATTCTTTAAAGACATT
GATAAGGTCCTTGAAAATGAAGAGTTTAGTGACACTCAAATATCCTCTTT
TTATCGTACACTCAGTGAACTGAATGAACTCAACATAGACAACTCCCAAT
CTCTTTCTTTATTGCATTTGAACATTGCTTCTCTCAATTTACACCAGGAC
GAGCTTAGAACTCTTATCAAAAATTGTGATACAAAATTTAACTTTATAGG
AATTTCTGAAACTGGATTCTCAAAATCTACCCCCAAATCTATTAATCTTG
AGGATTACATACCACTGGACACCCCAACTAAATCAAAAAAGGGAGGCACT
CGTCTCTACATCAAAAATAACTTTCATTACATCCCCAGACCTGATTTAGA
ATTAATCAAAGACATGGAGCTTGAGTCTACAGCTGTTGAAGTAATAAATG
AAAACAAAAATTTCATTGTTATGGTCATCTACCGACATCCCAATATGGAT
ATTTCAGAATTCAATGTTTTGTACTCCAACCTCTTAGACAAAATCTCAAA
AGAAAATAAACAAGCCTTTATCATGGGTGATTTTAACATAGATCTACTAA
AACATGAATCCCATGAAGAAACAAGCAAATTTCTAAACTCTAACTTTTCT
AACTGCTTTAAACCTCTTATTTCTGGACCAACAAGAATCACTCCCCACAG
CAAAACACTTATCGACAACATTTTTACCAATAGTCTCAAAGAAGTTGTTC
AGGCTGGAAACTTGATTACCTCAATTTCGGACCATCTACCTCAGTATGCT
ATTCTTAACTGGAATGTCAAAACCAAACAAAATCAAAAAGCTAAAATCTT
TAAAAGAGATTTCAGAAAATTTGATCGAAACAATTTTTTTCATGAGTTCT
CAGTTATCTCTTGGGAAAACCTTTTTGCTGAAAAAACACCTGGTGAGAAA
CTCAACATCTTTATCAATCAAACAACCGAAGTAATTGACAGCCATGCACC
AATGAAATCTTTTAAAAACAAATATACAAAAGCTCGAAAACCTTGGATAA
CAGCAGGCATACTGAAGTCTATTAACACAAGAGATATCCTCCAAAAAAAA
TACTTTAGATCCAAAACACCTGCCTTAAAGCAAGAAAAACACAAGGCTTA
TAAAAAATACAAAAATCTTCTTCTGAAAATAATGAGACAAAGTAAAGCTG
AATATTACAAAAAATATTTCAATGACCATAAAACCAATTTGAAACTTGTC
TGGGGTGCCATCCATGAAGTGACCAACAGCAAATCTAAATCTGACTTGAG
TCCAAAACTTATCATCCAAAACCAAAAAAAATTATGCAAAAATGAAGAAA
TTGCTGAAGCTTTCAATGAGTACTATGGTTCTATTGCTGACAAGACCAAA
GCTGAAATTCCACCTACGGATAAAGTCTTCAATGACTATCTTGGTGCGCC
TAACCCTGATTCTGTGTTTTTTCACCCCACATCTCCTGATGTCATCAATA
AATTAATCAATGAACTCGACGAGAAAAAGGCAAACGGTCCATCGAGTATT
CCCACGTTTTTCCTAAAACTCATTAGTCCTAGGGCATCCATCATTCTTGC
TGACATCTTCAATGAATGCCTCCAGTCTGGAACTTATCCTGACTGTTTGA
AAAAAGCCTCTATCAAACCTCTGCACAAGAAAGCCTCTAAATTAGAGATC
GGTAACTACCGACCCATTTCTCTGTTATCCAATATCAACAAAATTTTTGA
GAAACTTATTCACTTCAGACTCTCTGAATTTTTTACCCAACACGACATTA
TCTTCAAAAACCAATTTGGATTCAGAGAGCGTCACAGCACAAACCATGCA
ATAATTGCTCTCACTGAACTAGCGAGAGAAGCCCTTGATAACAAAGAATT
TGCTGCAGGAATTTTTATTGATCTTAAAAAAGCGTTTGATACTGTGGAAC
ACAGTATCCTTCTTCACAAACTTCGTCACTATGGTGTCAGAGGCAAACCT
TTTGAATTAATTTCGTCCTATCTCAGTAATAGAACTCGTGGTACTTTCAT
CCAAAACACTCTCTCAAGTCAAATTGAACAAAAACATGGTGTCCCACAAG
GATCAGTGCTTGGTCCACTTTTCTTCATTATTTACATTAACGATTTGAAC
AAAGCTATAGATCACTGCTCAACTATACACTTTTCTGATGACACTAGCCT
GGNTTTTGAATCTCATATCAGCTACTTTATCCAATCTCTTGGTCATGTCA
AGGTTGCCTCATTAGACAAGCTGGAAAAACTCCAAAATAAGGCACTCAGG
ATTATCCATTTTAAAGGCCCTCAGGATTCTGCCAAGCCTTTATATGTAAA
TAGCAGAATCTTGCCCATTAGGTACATCATGAAAGAAAAAAACTGTCTAT
TTGCATATGATTTTCACAAAAACAGAGCCCCAAAGTACTTTTCCACCTTC
CTCTCTCCCATAGGTAATAATGCTCCCCATGTCACAAGAAACAAGCAACT
GTCAATCACCAGAACAAAGACGGTAATGTATGGATCGCACAACATAGCTA
ATCTTATCACCAAAGACTGGAATGAAATCCACCCCCATCTACCTTCCCTT
GACCAAATTACCAGCAAATCCACTTTCAAGGCCCACCTTCATGCTTACCT
TCTCACTAAACTTGCCTCAAGTTAAATCCCTTCCCTGACTCCCAAGGTTT
CTTTGTAGATGTATATATTATTATTTTTATTATCATTGTTATTATCACTA
TTACCTTTTTTTCCTTTGTTTCTTATTTTGAATTATTCCCCAATTATAT Coding sequence (CDS) from alignment at scaffold_370:22926..26124- >TCONS_00062636 ID=TCONS_00062636|Name=TCONS_00062636|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_370:22926..26124- (Clytia hemisphaerica) GTAATAATGCTCCCCATGTCACAAGAAACAAGCAACTGTCAATCACCAGA ACAAAGACGGTAATGTATGGATCGCACAACATAGCTAATCTTATCACCAA AGACTGGAATGAAATCCACCCCCATCTACCTTCCCTTGACCAAATTACCA GCAAATCCACTTTCAAGGCCCACCTTCATGCTTACCTTCTCACTAAACTT GCCTCAAGTTAAATGCCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCC AGTAGCTAAGAACCACCGTGCGATCCAGTGTGACAACTGCTCCTATTGGG TACACATTAAATGCAACAATACCACAGACAATGACTATACCAAACTCATA TCATCAGATGAAACATGGTCATGCCTCAAATGCATCCAGACAGCAATACC ATTTCTTCAGTCCTCTGATGAAGAACTCAAGCTACTCACCCAAGGTAATA ATGCTCCCCATGTCACAAGAAACAAGCAACTGTCAATCACCAGAACAAAG ACGGTAATGTATGGATCGCACAACATAGCTAATCTTATCACCAAAGACTG GAATGAAATCCACCCCCATCTACCTTCCCTTGACCAAATTACCAGCAAAT CCACTTTCAAGGCCCACCTTCATGCTTACCTTCTCACTAAACTTGCCTCA AGTTAAATGCCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCCAGTAGC TAAGAACCACCGTGCGATCCAGTGTGACAACTGCTCCTATTGGGTACACA TTAAATGCAACAATACCACAGACAATGACTATACCAAACTCATATCATCA GATGAAACATGGTCATGCCTCAAATGCATCCAGACAGCAATACCATTTCT TCAGTCCTCTGATGAAGAACTCAAGCTACTCACCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062636-exon-scaffold_370-1575043694:25746..26124 | TCONS_00062636-exon-scaffold_370-1575043694:25746..26124 | Clytia hemisphaerica | exon |
TCONS_00062636-exon-scaffold_370-1575043694:22926..23261 | TCONS_00062636-exon-scaffold_370-1575043694:22926..23261 | Clytia hemisphaerica | exon |
TCONS_00062636-exon-scaffold_370-1510915933:25746..26124 | TCONS_00062636-exon-scaffold_370-1510915933:25746..26124 | Clytia hemisphaerica | exon |
TCONS_00062636-exon-scaffold_370-1510915933:22926..23261 | TCONS_00062636-exon-scaffold_370-1510915933:22926..23261 | Clytia hemisphaerica | exon |
TCONS_00062636-exon-scaffold_370-1491911889:25746..26124 | TCONS_00062636-exon-scaffold_370-1491911889:25746..26124 | Clytia hemisphaerica | exon |
TCONS_00062636-exon-scaffold_370-1491911889:22926..23261 | TCONS_00062636-exon-scaffold_370-1491911889:22926..23261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_370 | supercontig | scaffold_370:22926..26124 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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