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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062616 ID=TCONS_00062616|Name=TCONS_00062616|organism=Clytia hemisphaerica|type=transcript|length=8826bp protein sequence of TCONS_00062616-protein >TCONS_00062616-protein ID=TCONS_00062616-protein|Name=TCONS_00062616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2226bp MSTLGKTYAEQDVVEFQLTIQGEIRPSEPTVIYSTGRKTAGEKQDPFVIIRun BLAST on NCBI transcript from alignment at scaffold_370:47651..79667+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062616 ID=TCONS_00062616|Name=TCONS_00062616|organism=Clytia hemisphaerica|type=transcript|length=32017bp|location=Sequence derived from alignment at scaffold_370:47651..79667+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_370:47651..79667+ >TCONS_00062616 ID=TCONS_00062616|Name=TCONS_00062616|organism=Clytia hemisphaerica|type=CDS|length=207111bp|location=Sequence derived from alignment at scaffold_370:47651..79667+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062616 vs. Swiss-Prot (Human)
Match: SDK1 (Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=2 SV=3) HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0 Identity = 588/2153 (27.31%), Postives = 945/2153 (43.89%), Query Frame = 1
Query: 295 VTLPCSAEGTPSPKIVAWLFDGKRVNTRSGRHFLRPNGDLYITNTQKSDSGTYQCVAQNTVGGIASTKKKLFVTYFDYYNKGNAPEQVSKSENEYYIAKVPNIQIYPRELTRHTWYKDGSILKESERAQISEHGDLYLSQLKYQDRGTYKLTVENTFMSTLGKTYAEQDVVEF-QLTIQGEIRPSE---PTVIYSTGRKT--AGEKQDPFVIIECFITGVASGAPSIAWIKEDPFGGKPKTIFNGGRYEKQLG--GRRLKITDPNNLEDNGMYKCLPEYGLSTYEKQAKMIDLVVSSIPVFSTKP-GEYEAYTDSSATLNCLVTGLPTINITWYRNGIPMTHSSD-SHAVLKNNSIELIGLNWEDNGIFQCGAENYAGLFFVNQQLKVQNISAEIIGWSPKYYIHFNLAATIPCKTIGAPKPKITWLVNSTKIEQNS----KYSFNKNGSLVIQNIQASDQGKYTCTASNYIDTDYKSADVYAVVKTRISKFPGKEFPVVKGDSPIIPCEVEHDKRVNYTREWRKVGITI-PKTDKRYVMMEDGGLRVNFVKLDDTNLEFSCHIFADDANLTAATVLVMESRPFQPSSPRVNGEPKPNS-----LDLIWDAPDDGGSPIISYLLKMKNYTQTMYYKLADIDAPQTTYTVNNLQAGSKYRFQVAAKNKFGYGEYSAEATVWLETKTTAPSGPPLEFRSVDADTDYIVLRWEPPLPEKRNGQLDGYIFRYRVV-TTSSYVTRKLNSLDTEYKM-DGLPLFTKFEVQIAASNEIGIGPYTDSVFIETLQGKPVAPPTDVKVSIVNSTTVLVSFKSPRQALWNGKLTRIVALYWPPDVPEDQQTYETNYDTSNIHSQQFYLPRLEADKEYVLAVQVKTTGGPSPGSEKVQFKTTEGRPDSVRDLTVLKTYSDAFSVTWKPPLKPGGTLQGYKCEYRIASGKWVEVKEIIKGTEIGVVVKNLEPLTKYEVRVLAYTNAGDGSWEVRSATTIEKPELPHAPSSLKAYNVWGTVIALGWTPGYSGRAVILQYQIQYNNDTDYHQNPSRALWREMKNL-TKILENPANLTYLQPNAVYRFRMRAYNRLGASGWSNISVDISTGEGVPSSKPRGLIVTAPARQTLEIKWIPPPRDTWNSDSVKYQFLIHPKAQDLKKISRDQYHVLTDNEATSYAASGLQRFTMYNVTMRLFNNKGYGPWSKHIFFRTSEDYPSGYPMNVRADVQSASSVLVKWGPVPEDQRNGFIIGYKVFYELKGFPTTEMFEDFPGNTTFSGTITKLNGYTDYEFRVMAYTKVG-GLLKSPPVTRKTFEGKPGKPTNVRFIDVNYQYVQLEWDPPLNPNGRLSRYRVNYRQKGSS-GDWTQVPVSTFNPRSARVNGMVFNRVYEFKIEATNSIGWGEPAIEEVLVTTERSVAQSPVILAIPSTSIRHTSVIVEWRARFDGNAPIRGYNLQFNKDLTG-WQNYKHGIPPVENIGRDINKLEVLYLKPGMKYQFRVRAINDLGYSDWSESSRSVRTIQNEQKGAPRNVRVTKKTPTTLTIAWERPEELDLSSPIAGYRIQYQWLQ----------SIASPLL-------------VNTDDQTFEYTLKGLKVFSLYEVSVVVFTQLGAGTQTQPYKWRTGESKPTAEPTNVDVVMQGKSSVRVTWKPPDEESVRGYIRGYKIESRLIAAGSRRKRRDTSPNSKLQTYIRSHHRSRRALNPTCTAFPKVSEHLAGPYSTFATLKNLKKYTRYDITVRVYNSYADGPKSNPPVGFVTPEDVPGPPYILSDRQYTD-LIDVDFAEPCEPNGQIYGYRAKYQEFG--QKFSDPIDYPAS---QRRIRITGLVQTTRYILELTARTASGFGQKATIEFYTKGAPVRPDSPGAPE--IHDNKPGFLILQWDEGANGHAPVNNFELQYRKGSKGGLVPFRDIKATDI-RYDGSIVVSIPFSLKSDDVYRFRVRSTTKMGTSPWSDWSKPIKPVSAVAS--SKPMYEEIWXXXXXXXXXXXXXXXXXXCCWRCQRGKDGYKPKKNGYQMSSFEMAMVNNEGGRGANSDTASQHKRLLP--AATNGSLAP-------------SIAN-----------SSMRKSIAKSASSGTLSDEALLPGGASPLHGRADGSIANHYSNDP-FHKNWR 6492
+ L C AEG+ P W+ D + T S + I + QK D+G Y+CV +N +G + K ++ V Y + + + VS+ I + I YPR + TW+++G + S R I+ L + D G Y ++ + + E F L+I ++ E PT++ G ++ AG + +EC + S+ W + NG R L GRRL I++P + D G Y C S +E L + P F+ +P A + + + C G+P + WY++ I ++ + + VL + + + L ED+GIFQC A N G + L V NI+ + + A + C+ GAPKP ITW + + S ++ ++G L I + D G YTC A+N + SA + +T I P ++ V+KG + + C HD RV+ W+K + + P + R V+ +DG L ++ D ++SC I ++ N + L + P P + V+ PNS + L W P DG SPI+ Y++++ L+++ T TV+ L Y+F+V A N+ G G+YSAE T L PS PP + I+++W+PP + NG L GYI RYR+ Y R + S + Y + L ++T++E+Q+AA N G+G ++ +V TLQG P APP +V+ VNSTT+ + P Q NG L WP D PE D +H ++ L+ Y +V TT G P S T E +P +V L+ + + V+W+ PL+ G + GY+ + + + + T ++ L LT Y + V A T G G + ++ P+LP APS+L N+ L + PGY G+ I ++ ++ + L+ E ++LE P NLT P YRFRM+ N +G S +S S I T + P P + V + +L ++W+P P +N + + I DL+ + Q V++D + L+ + Y + M+ FN G GPWS+ + RT E PS P NV A+ S++ +L+ W VPE +NG I+GYK+ + K GN T S + L + YE +V+A+T++G G+ +P + +T + PG P + F +V V++ W PP PNG + Y++ YR SS +T V V R + Y F++ A GWGEP V+ T +R P L +P + S+ ++W DG +PIR + +Q + G WQ Y +I + V L+P Y+ R++A ND+G SD+S + +V T+Q+ P +V T T +++ I W+ P + L+ + GYRI Y+ L+ ++ +P+ VN+ + L LK + YEV + + +G + P + GE+ P P NV V S + VTW PP ES G I+GYKI A S+ + K++ R LKNL +T+Y +++ +N+ DGPKS+P G T + PG P L+ + T ++V + EP NG + GYR Y+ Q S + QR +++ L + Y + ART + +G + ++ P SPG+P + L LQW EG +G P + ++ R +G D+ DI R S +S+ L+ Y FRV + + G + +P P +AV++ P YEE WF+ V+ + LI+I++++ + K YK G +S+ E ++ + GG A + +S+H + + NG+ +P I N S KS S S T SD A P H S NHY +DP ++ +W+
Sbjct: 122 LVLTCLAEGS-WPLEFKWMRDDSELTTYSSEY------KYIIPSLQKLDAGFYRCVVRNRMGALLQRKSEVQVAYMGSFMDTDQRKTVSQGRAA--ILNLLPITSYPRP--QVTWFREGHKIIPSNRIAITLENQLVILATTTSDAGAY-------YVQAVNEKNGENKTSPFIHLSIARDVGTPETMAPTIVVPPGNRSVVAGSSE---TTLECIASARPVEDLSVTWKR------------NGVRITSGLHSFGRRLTISNPTS-ADTGPYVCEAALPGSAFEPARATAFLFIIEPPYFTAEPESRISAEVEETVDIGCQAMGVPLPTLQWYKDAISISRLQNPRYKVLASGGLRIQKLRPEDSGIFQCFASNEGGEIQTHTYLDVTNIAPVFTQRPVDTTVTDGMTAILRCEVSGAPKPAITWKRENHILASGSVRIPRFMLLESGGLQIAPVFIQDAGNYTCYAANTEGSLNASATLTVWNRTSIVH-PPEDHVVIKGTTATLHCGATHDPRVSLRYVWKKDNVALTPSSTSRIVVEKDGSLLISQTWSGDIG-DYSCEIVSEGGNDSRMARLEVIELPHSPQNLLVS----PNSSHSHAVVLSWVRPFDGNSPILYYIVELSENNSPWKVHLSNVGPEMTGVTVSGLTPARTYQFRVCAVNEVGRGQYSAE-TSRLMLPEEPPSAPPKNIVASGRTNQSIMVQWQPPPETEHNGVLRGYILRYRLAGLPGEYQQRNITSPEVNYCLVTDLIIWTQYEIQVAAYNGAGLGVFSRAVTEYTLQGVPTAPPQNVQTEAVNSTTIQFLWNPPPQQFINGINQGYKLLAWPADAPEAVTVVTIAPDFHGVH--HGHITNLKKFTAYFTSVLCFTTPGDGPPSTPQLVWTQEDKPGAVGHLSFTEILDTSLKVSWQEPLEKNGIITGYQISWEVYGRNDSRLTHTLNSTTHEYKIQGLSSLTTYTIDVAAVTAVGTGLVTSSTISSGVPPDLPGAPSNLVISNISPRSATLQFRPGYDGKTSISRWIVEGQVGAIGDEEEWVTLYEEENEPDAQMLEIP-NLT---PYTHYRFRMKQVNIVGPSPYSPSSRVIQTLQAPPDVAPTSVTVRTASETSLRLRWVPLPDSQYNGNPESVGYRIKYWRSDLQSSAVAQ--VVSDRLEREFTIEELEEWMEYELQMQAFNAVGAGPWSEVVRGRTRESVPSAAPENVSAEAVSSTQILLTWTSVPEQDQNGLILGYKILFRAKDLDPEPRSHIVRGNHTQSALLAGLRKFVLYELQVLAFTRIGNGVPSTPLILERTKDDAPGPPVRLVFPEVRLTSVRIVWQPPEEPNGIILGYQIAYRLASSSPHTFTTVEVGA-TVRQFTATDLAPESAYIFRLSAKTRQGWGEPLEATVITTEKRERPAPPRELLVPQAEVTARSLRLQWVPGSDGASPIRYFTMQVRELPRGEWQTYS------SSISHEATACVVDRLRPFTSYKLRLKATNDIGDSDFSSETEAVTTLQDVPGEPPGSVSATPHTTSSVLIQWQPPRDESLNGLLQGYRIYYRELEYEAGSGTEAKTLKNPIALHAELTAQSSFKTVNSSSTSTMCELTHLKKYRRYEVIMTAYNIIGESPASAPVEVFVGEAAPAMAPQNVQVTPLTASQLEVTWDPPPPESQNGNIQGYKI--YYWEADSQNE------TEKMKVLFLPEPVVR--------------------------LKNLTSHTKYLVSISAFNAAGDGPKSDPQQGR-THQAAPGAPSFLAFSEITSTTLNVSWGEPAAANGILQGYRVVYEPLAPVQGVSKVVTVEVRGNWQRWLKVRDLTKGVTYFFRVQARTIT-YGPE--LQANITAGPAE-GSPGSPRDVLVTKSASELTLQWTEGHSGDTPTTGYVIEARPSDEG----LWDMFVKDIPRSATSYTLSLD-KLRQGVTYEFRVVAVNEAG------YGEPSNPSTAVSAQVEAPFYEEWWFLLVMALSSLIVILLVVFALVLHGQNKK-YKNCSTGKGISTMEESVTLDNGGFAA-LELSSRHLNVKSTFSKKNGTRSPPRPSPGGLHYSDEDICNKYNGAVLTESVSLKEKSADASESEATDSDYE----DALPKH-----SFVNHYMSDPTYYNSWK 2157 The following BLAST results are available for this feature:
BLAST of TCONS_00062616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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