TCONS_00062732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062732
Unique NameTCONS_00062732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062732 ID=TCONS_00062732|Name=TCONS_00062732|organism=Clytia hemisphaerica|type=transcript|length=2836bp
ATAGACCCTTGTCAACAAGAAAGACCAACTGATGCATGAGAATCGAATAC
TGAAGAACAAAGAAGCTCGTTTCAATGAAGAATACAATACATTGGAGGAA
GAAAATACTTCTTTACAGAAAAACTTGTCACGTGCTAAACAAACCATGGT
CGAATTCGAAGGATTGAAAGTAGAAAATCAAAGTCTTTTAGACGagATTG
ACAGCTTACGATTACAATTACAAATGGCATCCAGCGCACGTGATCAATTC
GAAAAACAGTTGCACGAAAGTCTTGAATCACTAAAAGAACAGCGCGAAAA
AATCACTCACAATCAGAGAGAAATTAATGAGCTTAAACAACAAGCTATTG
CACAGAAATGCGGCATGGTTTACGGAAAAGGTGACTTCAATGGGCGTATT
GACATGGATGGTGGCGGTGAACATCCTTTGGTGAGACAAATTGAACAAGA
ATACAAGACAACGCATCCTTCGCCAAGCCCAgCCGTGGTAGATGACATCC
TTAAAGAATTACAGGGTGGAGAAGTTCGCGATCTAGAAGAACAGTTACGG
GTAGTTCAAGAAGAAAAAGAGCACTTGGAAAAAGAGCTAACAAGACAAGC
CTCTAACGCCGATATAGTTGCTGATGCTACGTCCCTTCTCCGTAGAGGCT
CTAGTGGGAATGTATCTGAAGAAGGAGATGAGTATACCTTGAATAATCAG
TTGCAGGAATTATCGGACGTCCGTAGTCGCGAATCTGCTTACCAGTTGGA
AATTAAGAGGTTGTGCGAAGAGACCGATGAACTTAAGGAACTTTTGGTTG
ATGTCGAGAATGAGAAGAATGCTTTGGAGGAGAGTGCTAAGGGTGAGAGT
AAACAACTATCGGATGATTTATTACAAACGAAATCGAAGCTGAGAGAATC
TGAGGGGAAAGTGAAAGACCTGAAGGAGAGAGTTTCGGTTTTGAAAGAAA
CTGCTTCAGAGGGTGACGGACTTTTCAAGAATCTTTATGATGGCTTGGTT
GAGATTTTGAACCAATTGTTGAGCGTACAATGTAAAGTTGTTATCATCAA
CGGGGAAGAGCAGACGGATTCGAAAATTGCCAAACCTGGTGAAATGAGCT
CTCCTTCGGACTGCTTGAAATTAACGACGCAAGTGAAACGACAAGTGCAA
ACGTTGAACGTTGCAGTTGAAAAAACGATGAATAAACAGAAAACATCATC
AGCGAAGGAGGGTGACACAAACGGAGAGCAAAACAATGATATCATAGCAG
AGAATGCGTTGTTAAAAGAACAAATCTTGAAACTGAAATCTTTGGTTACT
ACCAAACGTGAGCAGATTAGTACACTGCGAACTGTTTTAAAAGCGAATAA
ATCAACTTATGAGGTTGCattggccaatttaaaaagccGCTATGAGAATG
ATAAACAGATTCAAAGTGAAGCGAACGGACAGCTCAAGAAACAGATCAAA
TCATTGAAATCTGAGTGTCAGACTTTTGCGTCTTTACGTAGTATGTTTGC
GTCACGTTGCGAAGAATACTTGAAGGAGCTACACGAGAAACAAAAAGCTA
TTCTAGCAGCTGAGGAAGAGAAACGAACCTTAAATCAACTTCTTAAACAG
GCTATACACCAAAAGGTTGCCTTAACTCAGCGTGTTGAGGAGTTCGAAAT
CGCTCGTGAGCGTTTGAGACAGTTTACTAAAAAGAACGCTAAATCAGTTC
CGAGTGGGGCCTCTGCAACCGGCGCTACTGGACCAGCAAATGGTGCTGGA
CCCAAAGGGCCAAATAAGGGTCAGAGACCAGGTAATGGTCCTAGAGGACC
CCCTAGACCTGTTACAAGACTGTAAGGAATATATATTTCTGTCTTGAATT
ACTAAGTTTGATCAGGTGGATATATGTTTGGGTTTTTTACAGCGAGGTTT
TAACTTGTTTTAGATATACATAATTATTCTTTATTGATTTTAGATTATAT
ATTAGATTGTTTATATTTTATGTCACTCTCAGCTAGCGAATGAACTGTTG
TCTTCTAAATCATAGTTTATATTgtgctgttccattaaaaaacaatACAG
GGGAGGGGGgctggacgaaccttttcaagtcaaaaaataattattgaatT
ATGTGtcgataccccctggaaaaaatgCCCTTTGaaagattcttttcata
ccttaaagtgagggtggacgaactgaaatcagtcttttaccccgtGGAAA
tcttagaataactttttagccccttggaaaaaagataaaagatcccctgg
aaatttttctcgggtTACACTTAGGAAATGttcccccctgtatggatata
aattGGAATGGCCCATTTCACTAAGGCAAGCACTCTTTAGACTATATTTT
CATTGATCGCAGTACACAAAGTACAACCCTTATGTTGTATAATATAGTCA
TTTACTTAAAGCATAAAGACCTTTGAAATTTTCCGGCCCTTTTTGCAAAA
GTTAATATCTTTGTAAATTCATAACAGGCAAATTCGAGAAAGTCGATGAT
CGtgtaaaaTCCTTTAAATTAGAATATCTATAAATCTTCGAAATCACAAT
ATAAACTCTAAAACCTGTAGCATTTTTAACCGTAAAATTTCCTGTAAATC
GTAAAACATCAGTTTTGATTGAATTCCAGTATTGATTcacttttaaatta
tttttcctaaaaataatTGTTGGCCGAGAACGAATAGGTTACGCAATTAA
ATCTTTATTTAGCCAAGCATTTCGATCTGTATGTTTACCTCAGTTTATTG
GTTAGCTGACAGCAGCTTTTAGAATTTTAAGTGCATTTTTCcacttgact
tacgcatatctgTCATAATAAtttaacaaattttat
Run BLAST on NCBI

protein sequence of TCONS_00062732-protein

>TCONS_00062732-protein ID=TCONS_00062732-protein|Name=TCONS_00062732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp
MHENRILKNKEARFNEEYNTLEEENTSLQKNLSRAKQTMVEFEGLKVENQ
SLLDEIDSLRLQLQMASSARDQFEKQLHESLESLKEQREKITHNQREINE
LKQQAIAQKCGMVYGKGDFNGRIDMDGGGEHPLVRQIEQEYKTTHPSPSP
AVVDDILKELQGGEVRDLEEQLRVVQEEKEHLEKELTRQASNADIVADAT
SLLRRGSSGNVSEEGDEYTLNNQLQELSDVRSRESAYQLEIKRLCEETDE
LKELLVDVENEKNALEESAKGESKQLSDDLLQTKSKLRESEGKVKDLKER
VSVLKETASEGDGLFKNLYDGLVEILNQLLSVQCKVVIINGEEQTDSKIA
KPGEMSSPSDCLKLTTQVKRQVQTLNVAVEKTMNKQKTSSAKEGDTNGEQ
NNDIIAENALLKEQILKLKSLVTTKREQISTLRTVLKANKSTYEVALANL
KSRYENDKQIQSEANGQLKKQIKSLKSECQTFASLRSMFASRCEEYLKEL
HEKQKAILAAEEEKRTLNQLLKQAIHQKVALTQRVEEFEIARERLRQFTK
KNAKSVPSGASATGATGPANGAGPKGPNKGQRPGNGPRGPPRPVTRL
Run BLAST on NCBI

transcript from alignment at scaffold_371:341820..345996-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062732 ID=TCONS_00062732|Name=TCONS_00062732|organism=Clytia hemisphaerica|type=transcript|length=4177bp|location=Sequence derived from alignment at scaffold_371:341820..345996- (Clytia hemisphaerica)
ATAGACCCTTGTCAACAAGAAAGACCAACTGATGCATGAGAATCGAATAC
TGAAGAACAAAGAAGCTCGTTTCAATGAAGAATACAATACATTGGAGGAA
GAAAATACTTCTTTACAGAAAAACTTGTCACGTGCTAAACAAACCATGGT
CGAATTCGAAGGATTGAAAGTAGAAAATCAAAGTCTTTTAGACGAGGTTT
GTGTTTTTTTTCATCTAGCAGCCTATGGCGACTGTTTGTTGTCCTTTTTC
AAGATTTAAACATTAGAAAACCTTTGAGTTTAAAGCCTTGAAAGTAGCTA
AAAAGTTATCTAAAACCTTTCTCAAGCAAGAAACAGTATGACCTCTAATA
TTTGCGCCGTATTAAGATTGACAGATTTAATCTTTTCTTTATTTTTAAGC
GCCATTTTTCGAAATCTGGCGATGGGTATTACTTTCAATCCAGTTCAATC
TGGTGTTTGAGTGAAAACCATGCAGGTCACGCGTTTGGCTGGGAGATTCC
CATTCATGAGTTTCAAATCTAGCCCCTTCCAAGCTTTGAAATCAATATGA
TATGATTTAGGCTATTTTATAGACAGGTAGTTGTTGTAGCTACTACATTA
CTTATGGATTTAAGTGAGCCGCAATTCGGATCAATTATTAGATATACACT
GAAGAATTTTTATCGAAGTTTGATCACCGGTCTTTCCGCCAACTCAGCGA
ATGGGTAGTTAAGATTGGATAGTAACCTGATCTAGGCGGTAAGTTACTTA
GAGCTGAGAGTAGGTGTTGCGATCCACCTCAGCATTGAACCTCCCAGGCA
AATAGAAAAGGGGGTAGACTCTCGGCTTGGTTTGCAGCAACCAGATAAAC
ATTTTGCTCACTTACAGTATATTATTATTCTCAGATTGACAGCTTACGAT
TACAATTACAAATGGCATCCAGCGCACGTGATCAATTCGAAAAACAGTTG
CACGAAAGTCTTGAATCACTAAAAGAACAGCGCGAAAAAATCACTCACAA
TCAGAGAGAAATTAATGAGCTTAAACAACAAGCTATTGCACAGAAATGCG
GCATGGTTTACGGAAAAGGTAATGGAAATTTTCTTCCGTTAAGGTACTTG
TGTTTGAATCGAGAGTCATAATAATAAGTCTCAAAACGTGTTTTTTCTTT
TTGTTACTTCTGACGTTTTTAACCCCTTACTTTTTTTTATTTACATACAG
AAAAGGGTCTTTATTCTTGTTCACGATCGGAAATTGCCTGGTTAGAATTT
GAAGAAAGATAATTACATTTCAGGTGACTTCAATGGGCGTATTGACATGG
ATGGTGGCGGTGAACATCCTTTGGTGAGACAAATTGAACAAGAATACAAG
ACAACGCATCCTTCGCCAAGCCCAGGTATTGAAGAAAAAATCATTCTTCT
TTCTGTTACTGTAGAATGAGTTGTTAAAAAAGTGTTCTAAAAATATCTGT
TGTTTGTCATAAATAAAGCCTTGCAGGTTTTGCAGCTCCAGCGTTAAAAA
AATGCATTCATTTTTGGGTGTAAGGCCGCCAGCCTTTTTATCAAAATATA
AAGATTTTTGTTAACTCTGATTCGGATTGTCAAGGGTAACGTAAAGTCTA
CACGCGCATTGTAAGCTGAAGGAGCCACTATTTTCGTTCGAATTACAAAA
AGATTCGAATAATGGATTTAAGTAAAGAAGACTACGTATTCATTTTTTGA
CTGTATGGTGGGGTCAACCCGTTAATATGCCACGATCTCCTTAAGATGAT
ATTTCACTATTTCTATATGATTGGACCATTAATGTTACTTTACTGATAAT
TGATGTCTTTATTTTTACTTCAGCCGTGGTAGATGACATCCTTAAAGAAT
TACAGGGTGGAGAAGTTCGCGATCTAGAAGAACAGTTACGGGTAGTTCAA
GAAGAAAAAGAGCACTTGGAAAAAGAGCTAACAAGACAAGCCTCTAACGC
CGATATAGTTGCTGATGCTACGTCCCTTCTCCGTAGAGGCTCTAGTGGGA
ATGTATCTGAAGAAGGAGATGAGTATACCTTGAATAATCAGTTGCAGGAA
TTATCGGACGTCCGTAGTCGCGAATCTGCTTACCAGTTGGAAATTAAGAG
GTTGTGCGAAGAGACCGATGAACTTAAGGAACTTTTGGTTGATGTCGAGA
ATGAGAAGAATGCTTTGGAGGAGAGTGCTAAGGGTGAGAGTAAACAACTA
TCGGATGATTTATTACAAACGAAATCGAAGCTGAGAGAATCTGAGGGGAA
AGTGAAAGACCTGAAGGAGAGAGTTTCGGTTTTGAAAGAAACTGCTTCAG
AGGGTGACGGACTTTTCAAGAATCTTTATGATGGCTTGGTTGAGATTTTG
AACCAATTGTTGAGCGTACAATGTAAAGTTGTTATCATCAACGGGGAAGA
GCAGACGGATTCGAAAATTGCCAAACCTGGTGAAATGAGCTCTCCTTCGG
ACTGCTTGAAATTAACGACGCAAGTGAAACGACAAGTGCAAACGTTGAAC
GTTGCAGTTGAAAAAACGATGAATAAACAGAAAACATCATCAGCGAAGGA
GGGTGACACAAACGGAGAGCAAAACAATGATATCATAGCAGAGAATGCGT
TGTTAAAAGAACAAATCTTGAAACTGAAATCTTTGGTTACTACCAAACGT
GAGCAGATTAGTACACTGCGAACTGTTTTAAAAGCGAATAAATCAACTTA
TGAGGTTGCATTGGCCAATTTAAAAAGCCGCTATGAGAATGATAAACAGA
TTCAAAGTGAAGCGAACGGACAGCTCAAGAAACAGATCAAATCATTGAAA
TCTGAGTGTCAGACTTTTGCGTCTTTACGTAGTATGTTTGCGTCACGTTG
CGAAGAATACTTGAAGGAGCTACACGAGAAACAAAAAGCTATTCTAGCAG
CTGAGGAAGAGAAACGAACCTTAAATCAACTTCTTAAACAGGCTATACAC
CAAAAGGTTGCCTTAACTCAGCGTGTTGAGGAGTTCGAAATCGCTCGTGA
GCGTTTGAGACAGTTTACTAAAAAGAACGCTAAATCAGTTCCGAGTGGGG
CCTCTGCAACCGGCGCTACTGGACCAGCAAATGGTGCTGGACCCAAAGGG
CCAAATAAGGGTCAGAGACCAGGTAATGGTCCTAGAGGACCCCCTAGACC
TGTTACAAGACTGTAAGGAATATATATTTCTGTCTTGAATTACTAAGTTT
GATCAGGTGGATATATGTTTGGGTTTTTTACAGCGAGGTTTTAACTTGTT
TTAGATATACATAATTATTCTTTATTGATTTTAGATTATATATTAGATTG
TTTATATTTTATGTCACTCTCAGCTAGCGAATGAACTGTTGTCTTCTAAA
TCATAGTTTATATTGTGCTGTTCCATTAAAAAACAATACAGGGGAGGGGG
GCTGGACGAACCTTTTCAAGTCAAAAAATAATTATTGAATTATGTGTCGA
TACCCCCTGGAAAAAATGCCCTTTGAAAGATTCTTTTCATACCTTAAAGT
GAGGGTGGACGAACTGAAATCAGTCTTTTACCCCGTGGAAATCTTAGAAT
AACTTTTTAGCCCCTTGGAAAAAAGATAAAAGATCCCCTGGAAATTTTTC
TCGGGTTACACTTAGGAAATGTTCCCCCCTGTATGGATATAAATTGGAAT
GGCCCATTTCACTAAGGCAAGCACTCTTTAGACTATATTTTCATTGATCG
CAGTACACAAAGTACAACCCTTATGTTGTATAATATAGTCATTTACTTAA
AGCATAAAGACCTTTGAAATTTTCCGGCCCTTTTTGCAAAAGTTAATATC
TTTGTAAATTCATAACAGGCAAATTCGAGAAAGTCGATGATCGTGTAAAA
TCCTTTAAATTAGAATATCTATAAATCTTCGAAATCACAATATAAACTCT
AAAACCTGTAGCATTTTTAACCGTAAAATTTCCTGTAAATCGTAAAACAT
CAGTTTTGATTGAATTCCAGTATTGATTCACTTTTAAATTATTTTTCCTA
AAAATAATTGTTGGCCGAGAACGAATAGGTTACGCAATTAAATCTTTATT
TAGCCAAGCATTTCGATCTGTATGTTTACCTCAGTTTATTGGTTAGCTGA
CAGCAGCTTTTAGAATTTTAAGTGCATTTTTCCACTTGACTTACGCATAT
CTGTCATAATAATTTAACAAATTTTAT

Coding sequence (CDS) from alignment at scaffold_371:341820..345996-

>TCONS_00062732 ID=TCONS_00062732|Name=TCONS_00062732|organism=Clytia hemisphaerica|type=CDS|length=7176bp|location=Sequence derived from alignment at scaffold_371:341820..345996- (Clytia hemisphaerica)
CCGTGGTAGATGACATCCTTAAAGAATTACAGGGTGGAGAAGTTCGCGAT
CTAGAAGAACAGTTACGGGTAGTTCAAGAAGAAAAAGAGCACTTGGAAAA
AGAGCTAACAAGACAAGCCTCTAACGCCGATATAGTTGCTGATGCTACGT
CCCTTCTCCGTAGAGGCTCTAGTGGGAATGTATCTGAAGAAGGAGATGAG
TATACCTTGAATAATCAGTTGCAGGAATTATCGGACGTCCGTAGTCGCGA
ATCTGCTTACCAGTTGGAAATTAAGAGGTTGTGCGAAGAGACCGATGAAC
TTAAGGAACTTTTGGTTGATGTCGAGAATGAGAAGAATGCTTTGGAGGAG
AGTGCTAAGGGTGAGAGTAAACAACTATCGGATGATTTATTACAAACGAA
ATCGAAGCTGAGAGAATCTGAGGGGAAAGTGAAAGACCTGAAGGAGAGAG
TTTCGGTTTTGAAAGAAACTGCTTCAGAGGGTGACGGACTTTTCAAGAAT
CTTTATGATGGCTTGGTTGAGATTTTGAACCAATTGTTGAGCGTACAATG
TAAAGTTGTTATCATCAACGGGGAAGAGCAGACGGATTCGAAAATTGCCA
AACCTGGTGAAATGAGCTCTCCTTCGGACTGCTTGAAATTAACGACGCAA
GTGAAACGACAAGTGCAAACGTTGAACGTTGCAGTTGAAAAAACGATGAA
TAAACAGAAAACATCATCAGCGAAGGAGGGTGACACAAACGGAGAGCAAA
ACAATGATATCATAGCAGAGAATGCGTTGTTAAAAGAACAAATCTTGAAA
CTGAAATCTTTGGTTACTACCAAACGTGAGCAGATTAGTACACTGCGAAC
TGTTTTAAAAGCGAATAAATCAACTTATGAGGTTGCATTGGCCAATTTAA
AAAGCCGCTATGAGAATGATAAACAGATTCAAAGTGAAGCGAACGGACAG
CTCAAGAAACAGATCAAATCATTGAAATCTGAGTGTCAGACTTTTGCGTC
TTTACGTAGTATGTTTGCGTCACGTTGCGAAGAATACTTGAAGGAGCTAC
ACGAGAAACAAAAAGCTATTCTAGCAGCTGAGGAAGAGAAACGAACCTTA
AATCAACTTCTTAAACAGGCTATACACCAAAAGGTTGCCTTAACTCAGCG
TGTTGAGGAGTTCGAAATCGCTCGTGAGCGTTTGAGACAGTTTACTAAAA
AGAACGCTAAATCAGTTCCGAGTGGGGCCTCTGCAACCGGCGCTACTGGA
CCAGCAAATGGTGCTGGACCCAAAGGGCCAAATAAGGGTCAGAGACCAGG
TAATGGTCCTAGAGGACCCCCTAGACCTGTTACAAGACTGTAAGTGACTT
CAATGGGCGTATTGACATGGATGGTGGCGGTGAACATCCTTTGGTGAGAC
AAATTGAACAAGAATACAAGACAACGCATCCTTCGCCAAGCCCAGATTGA
CAGCTTACGATTACAATTACAAATGGCATCCAGCGCACGTGATCAATTCG
AAAAACAGTTGCACGAAAGTCTTGAATCACTAAAAGAACAGCGCGAAAAA
ATCACTCACAATCAGAGAGAAATTAATGAGCTTAAACAACAAGCTATTGC
ACAGAAATGCGGCATGGTTTACGGAAAAGATGCATGAGAATCGAATACTG
AAGAACAAAGAAGCTCGTTTCAATGAAGAATACAATACATTGGAGGAAGA
AAATACTTCTTTACAGAAAAACTTGTCACGTGCTAAACAAACCATGGTCG
AATTCGAAGGATTGAAAGTAGAAAATCAAAGTCTTTTAGACGAGCCGTGG
TAGATGACATCCTTAAAGAATTACAGGGTGGAGAAGTTCGCGATCTAGAA
GAACAGTTACGGGTAGTTCAAGAAGAAAAAGAGCACTTGGAAAAAGAGCT
AACAAGACAAGCCTCTAACGCCGATATAGTTGCTGATGCTACGTCCCTTC
TCCGTAGAGGCTCTAGTGGGAATGTATCTGAAGAAGGAGATGAGTATACC
TTGAATAATCAGTTGCAGGAATTATCGGACGTCCGTAGTCGCGAATCTGC
TTACCAGTTGGAAATTAAGAGGTTGTGCGAAGAGACCGATGAACTTAAGG
AACTTTTGGTTGATGTCGAGAATGAGAAGAATGCTTTGGAGGAGAGTGCT
AAGGGTGAGAGTAAACAACTATCGGATGATTTATTACAAACGAAATCGAA
GCTGAGAGAATCTGAGGGGAAAGTGAAAGACCTGAAGGAGAGAGTTTCGG
TTTTGAAAGAAACTGCTTCAGAGGGTGACGGACTTTTCAAGAATCTTTAT
GATGGCTTGGTTGAGATTTTGAACCAATTGTTGAGCGTACAATGTAAAGT
TGTTATCATCAACGGGGAAGAGCAGACGGATTCGAAAATTGCCAAACCTG
GTGAAATGAGCTCTCCTTCGGACTGCTTGAAATTAACGACGCAAGTGAAA
CGACAAGTGCAAACGTTGAACGTTGCAGTTGAAAAAACGATGAATAAACA
GAAAACATCATCAGCGAAGGAGGGTGACACAAACGGAGAGCAAAACAATG
ATATCATAGCAGAGAATGCGTTGTTAAAAGAACAAATCTTGAAACTGAAA
TCTTTGGTTACTACCAAACGTGAGCAGATTAGTACACTGCGAACTGTTTT
AAAAGCGAATAAATCAACTTATGAGGTTGCATTGGCCAATTTAAAAAGCC
GCTATGAGAATGATAAACAGATTCAAAGTGAAGCGAACGGACAGCTCAAG
AAACAGATCAAATCATTGAAATCTGAGTGTCAGACTTTTGCGTCTTTACG
TAGTATGTTTGCGTCACGTTGCGAAGAATACTTGAAGGAGCTACACGAGA
AACAAAAAGCTATTCTAGCAGCTGAGGAAGAGAAACGAACCTTAAATCAA
CTTCTTAAACAGGCTATACACCAAAAGGTTGCCTTAACTCAGCGTGTTGA
GGAGTTCGAAATCGCTCGTGAGCGTTTGAGACAGTTTACTAAAAAGAACG
CTAAATCAGTTCCGAGTGGGGCCTCTGCAACCGGCGCTACTGGACCAGCA
AATGGTGCTGGACCCAAAGGGCCAAATAAGGGTCAGAGACCAGGTAATGG
TCCTAGAGGACCCCCTAGACCTGTTACAAGACTGTAAGTGACTTCAATGG
GCGTATTGACATGGATGGTGGCGGTGAACATCCTTTGGTGAGACAAATTG
AACAAGAATACAAGACAACGCATCCTTCGCCAAGCCCAGATTGACAGCTT
ACGATTACAATTACAAATGGCATCCAGCGCACGTGATCAATTCGAAAAAC
AGTTGCACGAAAGTCTTGAATCACTAAAAGAACAGCGCGAAAAAATCACT
CACAATCAGAGAGAAATTAATGAGCTTAAACAACAAGCTATTGCACAGAA
ATGCGGCATGGTTTACGGAAAAGATGCATGAGAATCGAATACTGAAGAAC
AAAGAAGCTCGTTTCAATGAAGAATACAATACATTGGAGGAAGAAAATAC
TTCTTTACAGAAAAACTTGTCACGTGCTAAACAAACCATGGTCGAATTCG
AAGGATTGAAAGTAGAAAATCAAAGTCTTTTAGACGAGCCGTGGTAGATG
ACATCCTTAAAGAATTACAGGGTGGAGAAGTTCGCGATCTAGAAGAACAG
TTACGGGTAGTTCAAGAAGAAAAAGAGCACTTGGAAAAAGAGCTAACAAG
ACAAGCCTCTAACGCCGATATAGTTGCTGATGCTACGTCCCTTCTCCGTA
GAGGCTCTAGTGGGAATGTATCTGAAGAAGGAGATGAGTATACCTTGAAT
AATCAGTTGCAGGAATTATCGGACGTCCGTAGTCGCGAATCTGCTTACCA
GTTGGAAATTAAGAGGTTGTGCGAAGAGACCGATGAACTTAAGGAACTTT
TGGTTGATGTCGAGAATGAGAAGAATGCTTTGGAGGAGAGTGCTAAGGGT
GAGAGTAAACAACTATCGGATGATTTATTACAAACGAAATCGAAGCTGAG
AGAATCTGAGGGGAAAGTGAAAGACCTGAAGGAGAGAGTTTCGGTTTTGA
AAGAAACTGCTTCAGAGGGTGACGGACTTTTCAAGAATCTTTATGATGGC
TTGGTTGAGATTTTGAACCAATTGTTGAGCGTACAATGTAAAGTTGTTAT
CATCAACGGGGAAGAGCAGACGGATTCGAAAATTGCCAAACCTGGTGAAA
TGAGCTCTCCTTCGGACTGCTTGAAATTAACGACGCAAGTGAAACGACAA
GTGCAAACGTTGAACGTTGCAGTTGAAAAAACGATGAATAAACAGAAAAC
ATCATCAGCGAAGGAGGGTGACACAAACGGAGAGCAAAACAATGATATCA
TAGCAGAGAATGCGTTGTTAAAAGAACAAATCTTGAAACTGAAATCTTTG
GTTACTACCAAACGTGAGCAGATTAGTACACTGCGAACTGTTTTAAAAGC
GAATAAATCAACTTATGAGGTTGCATTGGCCAATTTAAAAAGCCGCTATG
AGAATGATAAACAGATTCAAAGTGAAGCGAACGGACAGCTCAAGAAACAG
ATCAAATCATTGAAATCTGAGTGTCAGACTTTTGCGTCTTTACGTAGTAT
GTTTGCGTCACGTTGCGAAGAATACTTGAAGGAGCTACACGAGAAACAAA
AAGCTATTCTAGCAGCTGAGGAAGAGAAACGAACCTTAAATCAACTTCTT
AAACAGGCTATACACCAAAAGGTTGCCTTAACTCAGCGTGTTGAGGAGTT
CGAAATCGCTCGTGAGCGTTTGAGACAGTTTACTAAAAAGAACGCTAAAT
CAGTTCCGAGTGGGGCCTCTGCAACCGGCGCTACTGGACCAGCAAATGGT
GCTGGACCCAAAGGGCCAAATAAGGGTCAGAGACCAGGTAATGGTCCTAG
AGGACCCCCTAGACCTGTTACAAGACTGTAAGTGACTTCAATGGGCGTAT
TGACATGGATGGTGGCGGTGAACATCCTTTGGTGAGACAAATTGAACAAG
AATACAAGACAACGCATCCTTCGCCAAGCCCAGATTGACAGCTTACGATT
ACAATTACAAATGGCATCCAGCGCACGTGATCAATTCGAAAAACAGTTGC
ACGAAAGTCTTGAATCACTAAAAGAACAGCGCGAAAAAATCACTCACAAT
CAGAGAGAAATTAATGAGCTTAAACAACAAGCTATTGCACAGAAATGCGG
CATGGTTTACGGAAAAGATGCATGAGAATCGAATACTGAAGAACAAAGAA
GCTCGTTTCAATGAAGAATACAATACATTGGAGGAAGAAAATACTTCTTT
ACAGAAAAACTTGTCACGTGCTAAACAAACCATGGTCGAATTCGAAGGAT
TGAAAGTAGAAAATCAAAGTCTTTTAGACGAGCCGTGGTAGATGACATCC
TTAAAGAATTACAGGGTGGAGAAGTTCGCGATCTAGAAGAACAGTTACGG
GTAGTTCAAGAAGAAAAAGAGCACTTGGAAAAAGAGCTAACAAGACAAGC
CTCTAACGCCGATATAGTTGCTGATGCTACGTCCCTTCTCCGTAGAGGCT
CTAGTGGGAATGTATCTGAAGAAGGAGATGAGTATACCTTGAATAATCAG
TTGCAGGAATTATCGGACGTCCGTAGTCGCGAATCTGCTTACCAGTTGGA
AATTAAGAGGTTGTGCGAAGAGACCGATGAACTTAAGGAACTTTTGGTTG
ATGTCGAGAATGAGAAGAATGCTTTGGAGGAGAGTGCTAAGGGTGAGAGT
AAACAACTATCGGATGATTTATTACAAACGAAATCGAAGCTGAGAGAATC
TGAGGGGAAAGTGAAAGACCTGAAGGAGAGAGTTTCGGTTTTGAAAGAAA
CTGCTTCAGAGGGTGACGGACTTTTCAAGAATCTTTATGATGGCTTGGTT
GAGATTTTGAACCAATTGTTGAGCGTACAATGTAAAGTTGTTATCATCAA
CGGGGAAGAGCAGACGGATTCGAAAATTGCCAAACCTGGTGAAATGAGCT
CTCCTTCGGACTGCTTGAAATTAACGACGCAAGTGAAACGACAAGTGCAA
ACGTTGAACGTTGCAGTTGAAAAAACGATGAATAAACAGAAAACATCATC
AGCGAAGGAGGGTGACACAAACGGAGAGCAAAACAATGATATCATAGCAG
AGAATGCGTTGTTAAAAGAACAAATCTTGAAACTGAAATCTTTGGTTACT
ACCAAACGTGAGCAGATTAGTACACTGCGAACTGTTTTAAAAGCGAATAA
ATCAACTTATGAGGTTGCATTGGCCAATTTAAAAAGCCGCTATGAGAATG
ATAAACAGATTCAAAGTGAAGCGAACGGACAGCTCAAGAAACAGATCAAA
TCATTGAAATCTGAGTGTCAGACTTTTGCGTCTTTACGTAGTATGTTTGC
GTCACGTTGCGAAGAATACTTGAAGGAGCTACACGAGAAACAAAAAGCTA
TTCTAGCAGCTGAGGAAGAGAAACGAACCTTAAATCAACTTCTTAAACAG
GCTATACACCAAAAGGTTGCCTTAACTCAGCGTGTTGAGGAGTTCGAAAT
CGCTCGTGAGCGTTTGAGACAGTTTACTAAAAAGAACGCTAAATCAGTTC
CGAGTGGGGCCTCTGCAACCGGCGCTACTGGACCAGCAAATGGTGCTGGA
CCCAAAGGGCCAAATAAGGGTCAGAGACCAGGTAATGGTCCTAGAGGACC
CCCTAGACCTGTTACAAGACTGTAAGTGACTTCAATGGGCGTATTGACAT
GGATGGTGGCGGTGAACATCCTTTGGTGAGACAAATTGAACAAGAATACA
AGACAACGCATCCTTCGCCAAGCCCAGATTGACAGCTTACGATTACAATT
ACAAATGGCATCCAGCGCACGTGATCAATTCGAAAAACAGTTGCACGAAA
GTCTTGAATCACTAAAAGAACAGCGCGAAAAAATCACTCACAATCAGAGA
GAAATTAATGAGCTTAAACAACAAGCTATTGCACAGAAATGCGGCATGGT
TTACGGAAAAGATGCATGAGAATCGAATACTGAAGAACAAAGAAGCTCGT
TTCAATGAAGAATACAATACATTGGAGGAAGAAAATACTTCTTTACAGAA
AAACTTGTCACGTGCTAAACAAACCATGGTCGAATTCGAAGGATTGAAAG
TAGAAAATCAAAGTCTTTTAGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039305XLOC_039305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062732-exon-scaffold_371-1575043694:345801..345996TCONS_00062732-exon-scaffold_371-1575043694:345801..345996Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1575043694:344929..345112TCONS_00062732-exon-scaffold_371-1575043694:344929..345112Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1575043694:344622..344723TCONS_00062732-exon-scaffold_371-1575043694:344622..344723Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1575043694:341820..344173TCONS_00062732-exon-scaffold_371-1575043694:341820..344173Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1510915933:345801..345996TCONS_00062732-exon-scaffold_371-1510915933:345801..345996Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1510915933:344929..345112TCONS_00062732-exon-scaffold_371-1510915933:344929..345112Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1510915933:344622..344723TCONS_00062732-exon-scaffold_371-1510915933:344622..344723Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1510915933:341820..344173TCONS_00062732-exon-scaffold_371-1510915933:341820..344173Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1491911889:345801..345996TCONS_00062732-exon-scaffold_371-1491911889:345801..345996Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1491911889:344929..345112TCONS_00062732-exon-scaffold_371-1491911889:344929..345112Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1491911889:344622..344723TCONS_00062732-exon-scaffold_371-1491911889:344622..344723Clytia hemisphaericaexon
TCONS_00062732-exon-scaffold_371-1491911889:341820..344173TCONS_00062732-exon-scaffold_371-1491911889:341820..344173Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062732-proteinTCONS_00062732-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:341820..345996 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1338	2.12487	1.20857	1.20589	36.9959	29.496	25.533	27.5214	17.0688	17.4938	15.834	14.2434	11.2634	11.1081	12.9317	16.6642	15.7497	15.1389	10.5024	10.3198	11.8511	11.5346	9.84247	9.80635	26.4189	24.9422	13.296	11.6334	15.5292	14.2142
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018477Bicaudal-D_microtubule-assoc
IPR013321Arc_rbn_hlx_hlx
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006810 transport
cellular_component GO:0005794 Golgi apparatus
Blast
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BLAST of TCONS_00062732 vs. Swiss-Prot (Human)
Match: BICD2 (Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.491e-43
Identity = 94/198 (47.47%), Postives = 139/198 (70.20%), Query Frame = 2 
Query: 1103 PSDCLKLTTQVKRQVQTLNVAVEKT--MNKQKTSSAKEGDTNGEQNNDIIAENALLKEQILKLKSLVTTKREQISTLRTVLKANKSTYEVALANLKSRYENDKQIQSEANGQLKKQIKSLKSECQTFASLRSMFASRCEEYLKELHEKQKAILAAEEEKRTLNQLLKQAIHQKVALTQRVEEFEIARERLRQFTKKNA 1690
            P +   L   ++ Q++ L  AV++T  +++Q+ +S + G         +  +   L E+ILKLKSL++TKREQI+TLRTVLKANK T EVALANLKS+YEN+K + +E   +L+ ++K+LK +  TF+SLR+MFA+RC+EY+ +L E Q+ + AAE+EK+TLN LL+ AI QK+ALTQR+E  E+  E+ R+   K A
Sbjct:  624 PMNIYNLIAIIRDQIKHLQAAVDRTTELSRQRIASQELGPA-------VDKDKEALMEEILKLKSLLSTKREQITTLRTVLKANKQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALTQRLELLELDHEQTRRGRAKAA 814
The following BLAST results are available for this feature:
BLAST of TCONS_00062732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BICD21.491e-4347.47Protein bicaudal D homolog 2 OS=Homo sapiens GN=BI... [more]
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