TCONS_00062807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062807
Unique NameTCONS_00062807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062807 ID=TCONS_00062807|Name=TCONS_00062807|organism=Clytia hemisphaerica|type=transcript|length=1124bp
CAATCGctcctgattttgactacaagTAATTTAAAAACAGAAGATTTTGA
TACTTAATGATCAATCTTTACAAACATTGGAAAGTGACAagaatttttct
gtttcttttgTTGGCTGGACTGACTTCATTCACATTGATTGCagttgatt
tcttttataacaagACATTTCCCTGGTGTTGCTTCAGTCATTCTTATTGT
TATTTCGGTTTGTTGATCCCTTGTCTTGCTCCTGTCAGTGTTGCATTTGT
TGTTCTCAATTGGCTTGGATTGAAGTTGTTCATTCATAACTGATTAAATC
ACTCAATTTTGATAACGGTCAACATGTCATCATCAGATCTGATTCCTAAC
CCAGAGATCCATACTTTGGAAGTTGCCACAAGCACAGAAGGAGAAGATGA
GACTTGTGTCACCTATGTTATGCATCATGAAGATCACACCATAGGAAATT
CACTTCGTTATATGATCCTCAAAAACCCTGAGGTTGAGTATTGTGGATAC
AGCGTTCCTCATCCATCAGAGGAGAAAATTAATCTGAGAATACAAACTAG
TTCAAAGCCAGCTGTGGAAGTATTGAAAACAGGACTTGTTAAtttgcaaa
aagtttctttACACGCTTTAGATACTTTTCAAGAAGCTGTGAtgaatttt
aaacaaaatcgaaaagaaaataatgaacaAGGAGATGTTGAAATGGACAG
CGATTGAATCTTTTTGGGATAAACTTCCATATGTCCTTCATTTCATTTTG
GTTAATAGAATGATACCTTTACTGTTTTGTTTCGCTAACTGTAGGAGAGT
ATGAGGTATTTATTTGGTACGGACAATGCTAAAGTAACATTTATAATTGT
GGAAAGCTTTCGTACCATGATGTTTTTAAATGTTCATTATACCGTCATCA
TGGGGAGGTTTTATTAAACAACATTTTTGACAGTATTTTGAAGGaacttt
ttaatttcaattttttgataattatGATCATTATTTGTCAACATTTGAAA
AGATGTAAAacgtttttctttgctttattgtacagtgaagtctctttaac
tcgaacctctataactcgtaTGTCTCTTTAATCCGAACAACTTTTCTAGC
CCCTTCATTTAAAAACCATACTCC
Run BLAST on NCBI

protein sequence of TCONS_00062807-protein

>TCONS_00062807-protein ID=TCONS_00062807-protein|Name=TCONS_00062807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MSSSDLIPNPEIHTLEVATSTEGEDETCVTYVMHHEDHTIGNSLRYMILK
NPEVEYCGYSVPHPSEEKINLRIQTSSKPAVEVLKTGLVNLQKVSLHALD
TFQEAVMNFKQNRKENNEQGDVEMDSD
Run BLAST on NCBI

transcript from alignment at scaffold_372:65040..78992-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062807 ID=TCONS_00062807|Name=TCONS_00062807|organism=Clytia hemisphaerica|type=transcript|length=13953bp|location=Sequence derived from alignment at scaffold_372:65040..78992- (Clytia hemisphaerica)
CAATCGCTCCTGATTTTGACTACAAGGCTGAACCTGTGTCGTGGGAGAAG
CCTCTCTTTTTTAGTGAAAATAAAAAAGAGAAACAGAAAATAAAACAAGA
AGTGGAAAAACTGGTTTGTCATTGTGGAAGTACTGTACCATTTGACAAGA
AGGATTGATTTCACAGCTTTTGACCCTGGAACAGCTACGCATGACAAGAG
AACACCTGGGTTCCCATGCGTAGCTGAGCAGGTACCAATCCTTTATTTTA
TCTGCATTATCTTGATCTACACGTTGTGCGAGCATTCTTCGGATACACCC
CTCCCTCAGTCTTGTTTGATCTTCTAAGTCTGGGATGGCAAATAATGAGT
GCAACAAAACTTCCAAACAAGAAGATGTTAACTCAGTAATTGGTGAGCTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGATTTACCAAATCTATTTTAGAAGATACCTTGTCTTTTCTACAAGTACC
TGAGCAAAAAGACTACCTGAAACCTTCAAACATACATAACCTTATATGTA
GGATCCAGAACTTGCTTCCAGAGAGATGCGTCATTTGTAATGAATCTTAT
TGTGTAAGGTTGGAGGATAATCCCCTTCTTCAATGCGTCATGTGTGGACA
GGATGTTCATAGGCAATGTTTTCTTCTTCAACTCGGTGCTGCTGACCAAA
ATATGGACAGTGATAGTCTCTTGTCTATCATTAATCCACATAACATCAAA
AACCTCTACTACCTTTGTGATCACTGTGCTAATGAGAACCTCCCAAAGAG
CGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGTAGGTCCGCGGATTGAAAAATTTCACTTACATC
CATCCTGAGTATGATAGCGTCTGCCAACCGTGTCAGAGAGGAATAATCCT
TTTTCAATCCGACGGGTACAAAATGCATAAAACATAATGCATATTGCATA
ATGCATAATAGTATTGTGTAATTTACAGAACGATTTTATATTTTCTAAAA
CTCTCCTTTGTCCAGATATTACTAATCCATAAAATCGATTAATCAATAAA
ATCGAATATCGATTAAAATCGATAGCTTATCGATCATTAATCGATTGATT
AAATATCGATTAAAAACGATAATCAATAAATAATCGGCGCCTAAAAAAAT
GTGAGTATCAATTATATCGATCAGATATAACATATCGATTATATTAATTA
TATATAATCGATTATATCAGTATCGATTATATCGATGTTNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATTCTCCTTAT
TATAGCCTCTAAAATTGACATTTTTCAGATATTATGCATTATGCATTATG
CAATATGCATTATGTTTTATGCATTATGTACCCGTCCTTTTTCAATCAGT
GATTCTAACTTTTATATTATTCCTGTCTCTAAAGAAGGGTGTTGGAATTA
AACGAGGGATGTCGATATTAGACCAACTTACGGTCTCAGCTTAGCTTACA
GTATCAGTTTTGTTCAAAGGAGATCAGTTGTTATAATAGTGGTTAAAGTT
GCTAGGGAAGCTGTGTGCTCTTCCAAAACTTTTCAAAGTCTGGAAGTTTC
TTTCTTGGCTTTCTCACTTAAGCTGTTGTTAAGATAGTTGTTTAGGACTT
AGGAGAATGCCAATATATAGTGTACCAAGGGTGGTCAGATGAAATTTCAA
ACTTACTTGCAGAATACCAAACCAAGTTTAATGGAAAGCCATAACCATCA
GAAGAAAAATGAGGGGTCATTTACCTTCCAAAGATATTCTATTTTAAGGT
TCAATTTTTCAAGCATTTTCGTGCACGCATCGCCAGCCATTTTGTACCTT
CATTACCATAATCTTCCCCTTAGCGCTTGCCTCTGGAAACAGCTTGATTC
TTACTTTTTTCACATTTGGAAAGAAAAAACATTGTTCTTTCTAAAAAATT
CACGTTCGATAAAAAAATTAGATTTTTTCAATGAAAAAAACGCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTACATAATTT
GACTTCCTGAAAAATATACGTTGCTCCAACCAACGAACGTGGTACGTCTC
AAAAGCTAAACTATTGCGGGGAACGATGCAAAAAATTCCAGTTCGATAGC
TGTTTCGGGTGGCTAGCGCTTTGGATTTTAGAACCCCCGGATAAAAAATT
TTGCCATGCCGCAAACAAGAAGTTTGAAACAACTCACCCGCGAGTACTCA
TTTTCAAATTTTGAAGGAAAATGAAGACATGATGTACTGATTTTTTCTGC
AAAAGAAAGCTGAATAAATTCTCTACACTTTGGAAAAAATACTGATGTTA
AAAGAGGTTTCCTTCCTTGAGGTATGTAAGNAGTAAGACTTAGGCTGTTG
TGTGAGATTGTAGACAAAGCAAAGTTAGTGAGTTTCTAAAACAATAGACA
GACAAGTTAGGGTTGTTGTTTTGAAGTAGCGATAAAGCAATAGATAAATG
AATGAAAAAAGTTGCGAGGTAGCGAGTTTATAAAGCAATAGATAAACGAA
TGAATGAAGCAGCGAAGTAGTGAGTTTATAAAGGAATAGATTTAAACGAG
TGAATAAAGTAGCTATGTAGCAAGTTAAAGCAATAGATACACGAATGAAT
GAAGCAGCAAAGTAGCGAGTTTATAAAGCAATTGATAAACGAGTGAATAA
AGTAGCTAAGTAGCAAATTTATAAAGCAATAGATTAACGAATGAATGAAG
TTGGGAGTTTATAAAGCAATGCATAAACGAATGAATAAAGTAGCGAAGTA
GCAAGTTGATAAAGCAGTAGATAAACGAGTGAATAAAGATGCAAGGTAGA
GAGTTTATAAAGAAATGGATAAACGAATGAATTAAGTAGCAAAATATGTG
TTTTCTTAAAGTTTTTTTAGCTTCGCATTTTTGAGTTAGGAAATCTTTTT
GGGTCGCTAAACTTAAAATTCGCTTCGCATTTTGCGAAGTGCGAAGCTAT
AATTCGAACCCTGTCCTCCCATACCAGTAAGCAAATAAAATAATTTCAAC
CTTTTCTTAATTTTTCAGCTCTAGAAAAGGGTGTCGAATTTAGAGGAGGG
ATGTTGACATTAGACCAAGTTACGGTATAGTACAATTTTTGTTTTGATTT
AATTTTGTATTTTAACGACCAGCTGGGTCATTTATTTGATGGGCTATGCA
TGTTAGCCTCCACTGATGCAAGTTACCCAATGTCACGGTATAAGAGTTGC
AAAGAGATCCAGACTCCACCTCAATTCTTAATTTGCTAGCAAAATAAAAG
ACACTCTGAAAATCTCTAGAAAGAGACAGGATTGTAAGCCTTAATGCTCA
AAATAATTAGATTGTTTTAGGTATTTTGTTCAATCACAAACATGCGTGAA
AAGCACCAAATATTTTGTTATCCAATCACCCCGATATCTTAATTGTTTTA
TTTAATTTCCAATCAAAAAATTCCCCTTTGATAAAAAGAAGTATCTTATC
GAATAAAGGTAAAGTGCTTTCATCCGATCCGATCAGAAAGAGAAAGGATT
CTCTAAAAAAAATAATGCTTGCATTAATTTACTGTTTTTGTTTATGAATT
AAAGGCAAGAAGCCTGTTGGGCGTGAAGGCCCAGCGAAAAGTAACGTGTT
GAAAACGAGCGTGCAAAACAGCAAATGTATGACCCTGTTGACATGGATCA
AAGTGGAGACAGGAAAAATCTTTTCAAAATCACCGCGGTACGTCTCATTG
GTTAGACGCTTGAAATTTTATTGGTGGTCTCCTAACCAACCGGGTCTACA
GGCGCAGGTTCACCCGGTTGAATACTCTTGGGTACCTAATAGCTGGGGGG
TTTGGAATAAACAGGGGGAGGTTGGAAAAAATCTCAAAACTTAATAAGCG
GGGGGGGGGGGGGGTGGGATAAAAATGTCCTAGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGTTGGAATAAAAATGTCCTAGGTGGAAAATGTCCATAAATT
ATGCGCGCCCATAGAAAAATATAAAAAAACCCGCAAATATATAGTGAGTG
GGCGCTTTTTAACCAATTAGGTGCACTCACATATATGCAGGGAGAAATAT
CCCTGCAGGCATGTTAGTTGGATCAGACCGTAAACTAAGAAAATAATCTT
TAAAAAACTAGACGGAAATAGTTTACCGTCTGCATATCCAGCCTAATAAA
ATTCATGTGGTTAATGTGAGTTAACAGTTAATGTGACAGATCCAGAAATG
ACCATTTTCACTGTTCATGCGTTGCAACCATGAAAAATGTTTCAATCTAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGCTGCATTTTAGTGT
CCATTAACAGATTCCAGAATCAGTTTATACTTTAAATAATTATGTGAGTC
GAGTTTGAAAAATCAAGCCACCGACCGTTTAATGCGACATCCAGAAATAT
TTGGTCCGTAAAAATGTCTTGCTATTTTTGACTGAACAAAAGCGGTATGT
TCAGGCTGCCCTTGTGCTAGGAGCAATGTCATGTTGGATAATTAATAACT
CCAGCATCAAAACAATGATGAGAAAAAAATTAATGCATAATTATGATAAT
GCATCAATGTGTCATTGTTTTGATACTGGACTTTAATAATTATCCAACAT
GACATCTGCCCAAAAATCATAGTGGGTACCCCAAATGGGGTGGGGGTGAC
CTTTTTCAGGTGGGTGGGAGTTGGAGATAAGCTGCCCACTATGGGGCCTA
GTAAAAGGTCTATTTGAATGTTATAAATTGTTGATTCACAATTTGTGTGT
CTTCAGGCAGGCTGAATTCTAATGTTTTTATTAGGGGGTTTCTTCAAAAT
CAAATCAAGCATATACCGTACGTGATGAAGGTCTGAAACTGAGCCAAAAA
ATTGCTACAGTACAACAATTTTTAACTTTTGTAGATCAGGCAAAGGTAGG
TAGGCAAAATTTGACATTTAATTCCCAAGATAGCACTATGATTTCTTACG
CCTTTAATTACAGGCTAAAGTAAAAAAGATTCCACATGAGTCAGTGGGTC
AGTGTATAAGGTTCGGCAAAATTTCTGGGAAGTAGCCATCTAGCAGTTTG
CAGCTTTGGTGATATTTAGAAGTTTTATGGAACATTCTTTGCTTATGAGT
TAAGTAAATAATAAAGTGCTTTTGTAGCATTGATCTTTGATCTGCTTTGA
TGCATATTTTGGGGGATGCACTTAGGCAAAAATGGGTACTGGGTATGTGC
AAATGGTAAGGGTTGTTTTTTTCACCTCTTCACATACCCAAATACCCCAC
ATTGGCCAACCTTAGTACCCCAAAGGTTATTGGGAGTAGTCAAAATATGT
TTTCTCAAAAGGTGATTGAAGGGATAATACATAATACCTAGCTTGAAAGT
CAATATAAAAGCTGTTACAAAAATCATTGGCAGGGTCAGCTTTTGTCAAG
TATCAGTCTCAAAGAATTTAAATGTCAAAGCTTAGAGAGACTGCACTGTT
GCTGTGTCAGGTGCAAAATGTTCAAGTCAATGTCAAAGAGCATTAGAAGT
TTAAAAAACATCTCAACAGAAAATACCTTCAATTCTGACTTGAATTATAT
ATAATCTACGCAAAATTTTATCCCACTAAAAAGTAATTTAAAAACAGAAG
ATTTTGATACTTAATGATCAATCTTTACAAACATTGGAAAGTGACAAGAA
TTTTTCTGTTTCTTTTGTTGGCTGGACTGACTTCATTCACATTGATTGCA
GTTGATTTCTTTTATAACAAGGTATTTTGATTTTTTTTTTAATTATTTTA
GATGATATATACATTGTTCTTTCATTTTAAGAGCCCCCTGATCGTGTTAA
TCCCTTTAATTTTTACGCACGTTTTGCATTCGCACAAAGTGAATATGTTC
TCAAAAATAAATGGTAGACAAAAGGTTCTTTCTTTGCCACTTGGCCTTTT
TGAAAATTTAAAGGTAGGCAAATTAATAATGGTTTTGAATGTGTATATGT
GTAAAAATCGTATCTCATCAAATAAAATGTCCCTGATTCATCTTAAATAG
GGTCGTTGTAAAACATGGAGTAGCTCCATGGAGTACTCCAATGGAGTACC
TATTGGAGTACTCTAAAAATATTGCAGACCAGATTTTAGATCGCCGCGAG
AGGAAAATAAAGACCTGTATAATTTCTCCATTTATTGTGATTGTCTTATT
ATTTTGTTAATTGAAGTGTATTTTGTCAATAAAATGACAATGAATAATTT
AATGCTCACAGACTGTCCCCAACTGCCATTACATATCCAGTCATACCTGC
ATCATATTGAGTATGATAAAAATTCCTCTTGGAAATGGGTTGATAAGCTA
TGTATTCTATGATTGTCACAATATTTTCTTTAAAAAAGTCAATCTGTTGA
CAAAAGGACAAAAGAAAAATATTGCTTAAGNNTTAGAATCAACAAAGATT
TTTAAGCAGAGAGCGTGCGCTATATGAGCTTTATTGCCAGAAATGATGGT
AGCCATTTTTTCACAAACAAATACTTGAGAAATTCTTTTGCTTGCTATAA
ATTGGAAGTTTACAGCTGTTGGAAAAGGTTGGAAAAGGTTGATTATCAAA
TTTGTGATATTCATCGCTCTGACAGGTATTTTAGGGGGTACTCCATTAGG
TACTCCATTGGAGTACTCCATGGAGCTAATCCATGTTTTACAACGACCCT
CTTAAATATGCCTCTGGAATGAAAAATTTTGCTAAGAGCTGATTATATTT
CTTTTTGCTCTTGTTGCCTTTAAGTTATATCAATAACATTAAAAAATATC
CAAGCTTTTACTCGATGCACAAAAATTAAAGGATGTATGAATGCCCTATT
CTGAAAGGCGCGTGAAAGTAAAAGGCTTAAAAATTTAAGGTGAGAAGATG
AAAGACCCCGGAAAATCAATGGGATTAAGGTATCAGCTAATCTGAAACTG
CTCAAGCATTCTTAGGTGGAATAATTGAAACAACCCCTTTTTTATGATCA
ACAGCTAGATGACCTGATCTGATTTGATATCTATTGTTTTGTGTTTGTTA
AATCTTCCTTGTTTCTATTTCAGACATTTCCCTGGTGTTGCTTCAGTCAT
TCTTATTGTTATTTCGGTTTGTTGATCCCTTGTCTTGCTCCTGTCAGTGT
TGCATTTGTTGTTCTCAATTGGCTTGGATTGAAGTTGTTCATTCATAACT
GATTAAATCACTCAATTTTGATGTGAGTTTTACTTTGTTGTGATATCAGG
ACCTTTAAAATAAAACCGTTCAAAACCTTCAGAACCTTGGCTTTAAGGGC
AGAAACTTTCGCGTTTTTCGCGAAATTGATCCTTTTTCGCGAAAGTTTCT
GCCAGGTAAAGAATTAAACCTGAAAAAGACGAAAGCTTTTTTCACGAAAA
ATAAACTTTCCTACTCAGTTTTGCACTAATTGCTAAATTTTGGTGTATTT
TATGAGTTTTTGTTACCAAAAAAGGTAAATTTTATATGAATTCGCGAAAG
TTCTATCTGTGAAATTTCGGCTAAAACCATAATTCGCGAAACTTTCTGCC
TGCGAAACTTTCTGCCCTTAAAGTAACCAACCACTGTTTTTATGAGAAAA
GTGAAATTTGCCTGAGCATTAAATTACAATGAATATACTTTTAAAATGCT
GAAATCTCAGTCTGATATTTTTCAAGGGAGTATAATTTTTAAAATAAATT
AACTATCAAACTTGACATTTTTTTAATAAGAATATCTATTTTGTGTGATA
TCCTAAGGACTGCCTTTAGAGTCCATAAAACCTTATAATGTTATTGTTCT
CAATATTTTGGTCGTCGAAACCTAATATTCTTATATGGTTTGTAACACTT
ATATATGATGTGCTCAATACTTGTTACCTTTTTTTTCCACAGAACGGTCA
ACATGTCATCATCAGATCTGATTCCTAACCCAGAGATCCATACTTTGGAA
GTTGCCACAAGCACAGAAGGAGAAGATGAGACTTGTGTCACCTATGTTAT
GCATCATGAAGATCACACCATAGGAAATTCACTTCGTTATATGATCCTCA
AAAACCCTGAGGTTGAGTATTGTGGATACAGCGTTCCTCATCCATCAGAG
GAGAAAATTAATCTGAGAATACAAACTAGTTCAAAGCCAGCTGTGGAAGT
ATTGAAAACAGGACTTGTTAATTTGCAAAAAGTTTCTTTACACGCTTTAG
ATACTTTTCAAGAAGCTGTGATGAATTTTAAACAAAATCGAAAAGAAAAT
AATGAACAAGGAGATGTTGAAATGGACAGCGATTGAATCTTTTTGGGATA
AACTTCCATATGTCCTTCATTTCATTTTGGTTAATAGAATGATACCTTTA
CTGTTTTGTTTCGCTAACTGTAGGAGAGTATGAGGTATTTATTTGGTACG
GACAATGCTAAAGTAACATTTATAATTGTGGAAAGCTTTCGTACCATGAT
GTTTTTAAATGTTCATTATACCGTCATCATGGGGAGGTTTTATTAAACAA
CATTTTTGACAGTATTTTGAAGGAACTTTTTAATTTCAATTTTTTGATAA
TTATGATCATTATTTGTCAACATTTGAAAAGATGTAAAACGTTTTTCTTT
GCTTTATTGTACAGTGAAGTCTCTTTAACTCGAACCTCTATAACTCGTAT
GTCTCTTTAATCCGAACAACTTTTCTAGCCCCTTCATTTAAAAACCATAC
TCC

Coding sequence (CDS) from alignment at scaffold_372:65040..78992-

>TCONS_00062807 ID=TCONS_00062807|Name=TCONS_00062807|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_372:65040..78992- (Clytia hemisphaerica)
ATGTCATCATCAGATCTGATTCCTAACCCAGAGATCCATACTTTGGAAGT
TGCCACAAGCACAGAAGGAGAAGATGAGACTTGTGTCACCTATGTTATGC
ATCATGAAGATCACACCATAGGAAATTCACTTCGTTATATGATCCTCAAA
AACCCTGAGGTTGAGTATTGTGGATACAGCGTTCCTCATCCATCAGAGGA
GAAAATTAATCTGAGAATACAAACTAGTTCAAAGCCAGCTGTGGAAGTAT
TGAAAACAGGACTTGTTAATTTGCAAAAAGTTTCTTTACACGCTTTAGAT
ACTTTTCAAGAAGCTGTGATGAATTTTAAACAAAATCGAAAAGAAAATAA
TGAACAAGGAGATGTTGAAATGGACAGCGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039350XLOC_039350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062807-exon-scaffold_372-1575043694:78967..78992TCONS_00062807-exon-scaffold_372-1575043694:78967..78992Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1575043694:67972..68109TCONS_00062807-exon-scaffold_372-1575043694:67972..68109Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1575043694:66521..66669TCONS_00062807-exon-scaffold_372-1575043694:66521..66669Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1575043694:65040..65850TCONS_00062807-exon-scaffold_372-1575043694:65040..65850Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1510915933:78967..78992TCONS_00062807-exon-scaffold_372-1510915933:78967..78992Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1510915933:67972..68109TCONS_00062807-exon-scaffold_372-1510915933:67972..68109Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1510915933:66521..66669TCONS_00062807-exon-scaffold_372-1510915933:66521..66669Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1510915933:65040..65850TCONS_00062807-exon-scaffold_372-1510915933:65040..65850Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1491911889:78967..78992TCONS_00062807-exon-scaffold_372-1491911889:78967..78992Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1491911889:67972..68109TCONS_00062807-exon-scaffold_372-1491911889:67972..68109Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1491911889:66521..66669TCONS_00062807-exon-scaffold_372-1491911889:66521..66669Clytia hemisphaericaexon
TCONS_00062807-exon-scaffold_372-1491911889:65040..65850TCONS_00062807-exon-scaffold_372-1491911889:65040..65850Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062807-proteinTCONS_00062807-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:65040..78992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
89.0947	81.2352	87.6908	77.9502	14.8762	11.5141	20.9683	21.8566	19.3431	14.7999	18.796	12.434	11.6989	10.859	15.9597	15.5018	23.2675	20.358	7.26856	8.93901	30.806	29.8027	43.5589	43.3365	11.4646	15.8098	19.5573	14.6248	22.3651	19.1625
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR033898RNAP_AC19
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
Blast
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BLAST of TCONS_00062807 vs. Swiss-Prot (Human)
Match: RPAC2 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.147e-32
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 3 
Query:  390 GEDETCVTYVMHHEDHTIGNSLRYMILKNPEVEYCGYSVPHPSEEKINLRIQT-SSKPAVEVLKTGLVNLQKVSLHALDTFQEAVMNFKQNRKENNE 677
            G D  CVT+V+H EDHT+GNSLRYMI+KNPEVE+CGY+  HPSE KINLRIQT  + PAVE  + GL  L  V  H LD F+ ++ ++K  +   NE
Sbjct:   34 GTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKASRNE 130
The following BLAST results are available for this feature:
BLAST of TCONS_00062807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAC21.147e-3256.70DNA-directed RNA polymerases I and III subunit RPA... [more]
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