TCONS_00063007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063007
Unique NameTCONS_00063007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063007 ID=TCONS_00063007|Name=TCONS_00063007|organism=Clytia hemisphaerica|type=transcript|length=258bp
ttcCTACTGTACCATCCATTCCTGCTGACCATCTAACAGACCACAATTAC
GCCATTGTCACataaaaagaacaaatcgataTTGAAATGGAGTATGCTGA
CGATATCGGGAAAGTAACTTCAGACTATCGCGCACTGCAAAAGTTTAAGC
AGACCGTCCCAACAGAACTAGAAAAACGAGATCTAGTAATAAATCAGGAC
AAAACGGAACAATTTACCATCACAAGAAATAACAACGAATGGAAAAAGTG
CAAATATC
Run BLAST on NCBI

transcript from alignment at scaffold_375:301134..301391

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063007 ID=TCONS_00063007|Name=TCONS_00063007|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_375:301134..301391 (Clytia hemisphaerica)
GATATTTGCACTTTTTCCATTCGTTGTTATTTCTTGTGATGGTAAATTGT TCCGTTTTGTCCTGATTTATTACTAGATCTCGTTTTTCTAGTTCTGTTGG GACGGTCTGCTTAAACTTTTGCAGTGCGCGATAGTCTGAAGTTACTTTCC CGATATCGTCAGCATACTCCATTTCAAtatcgatttgttctttttatGTG ACAATGGCGTAATTGTGGTCTGTTAGATGGTCAGCAGGAATGGATGGTAC AGTAGgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039467XLOC_039467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063007-exon-scaffold_375-1491911889:301134..301391TCONS_00063007-exon-scaffold_375-1491911889:301134..301391Clytia hemisphaericaexon
TCONS_00063007-exon-scaffold_375-1510915933:301134..301391TCONS_00063007-exon-scaffold_375-1510915933:301134..301391Clytia hemisphaericaexon
TCONS_00063007-exon-scaffold_375-1575043694:301134..301391TCONS_00063007-exon-scaffold_375-1575043694:301134..301391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:301134..301391 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (11.498 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03037 1.72943 7.02222 4.144 1.82538 0.72122 0.870121 0 2.57353 3.18982 3.18317 2.96302 2.94749 1.82326 1.15291 1.30529 2.03226 2.31461 2.37202 1.99251 2.41505 0 0.801307 1.10962 3.6332 11.498 3.00732 1.49398 1.05948 2.29602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
ttcCTACTGTACCATCCATTCCTGCTGACCATCTAACAGACCACAATTACGCCATTGTCACataaaaagaacaaatcgataTTGAAATGGAGTATGCTGACGATATCGGGAAAGTAACTTCAGACTATCGCGCACTGCAAAAGTTTAAGCAGACCGTCCCAACAGAACTAGAAAAACGAGATCTAGTAATAAATCAGGACAAAACGGAACAATTTACCATCACAAGAAATAACAACGAATGGAAAAAGTGCAAATATC20406080100120140160180200220240Sequence
Match NameE-valueIdentityDescription
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