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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063112 ID=TCONS_00063112|Name=TCONS_00063112|organism=Clytia hemisphaerica|type=transcript|length=792bp
GACAGATCTTTCACGAAGCCTTCTGGTTGcttcatgaaaatttcagcatc
taatTCACCATTCAAAAATACGGTTTTGACATCCATCTGATGTATATCGA
GATCTAATTCGTTGGAAATAGCTAAAACAGTTCTTAACGAATTGTACTTT
GCAACTGGGGCGAAGGTTTCATCATAGTCATTCCCTTTCTCTTGAGAATA
ACCTTGGGCGACGACACGAGCTTTGTATTTCGTAATCTCGCCATCTGCAC
CTCGTTTCTCTTTGAAGACCCATCGACTACCAACAACATTTTTGCCTTCA
GGTAAATCAACTAAGTCCCATGTATGGTTTTCAACTAGCGAATTCATTTC
ATCGTCAATAGCTTTCCGCCAGTATTCAGCTTTCTCACAGGTTGTCGCTT
GTGTGTAGGTCTGGGGCTCATTGGAATCAACAGCAACATTCGCCAATTCC
CACCAATTGCCAGTGATGACACCTAAACGATCAGGCGCCTTACGATCACG
TTGAGCACGTTGAGGAACCTCGACAAGTTCTCCTTGAACAGCTTGATCAG
GAACGACTTCTGGTACAGCTTCCGGTACAGCCTCTTGCACGACTACAGGA
GCGACTTCAGGAACAAAGTCATTATCGAAATAAAACTGGCATTGTTCATC
AACTATGCCCTCTTCCTTAGAATTTCCGGTAACGAGCAGAAACTCCTTTT
CGAAGAACAGGACATCATTACTACGGATCATCTTTCCGGTTTCAGAATTG
AACAATTTGTATCCTTTGCTGTCATTTGGATAACCAACAAAG Run BLAST on NCBI protein sequence of TCONS_00063112-protein >TCONS_00063112-protein ID=TCONS_00063112-protein|Name=TCONS_00063112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
FVGYPNDSKGYKLFNSETGKMIRSNDVLFFEKEFLLVTGNSKEEGIVDEQ
CQFYFDNDFVPEVAPVVVQEAVPEAVPEVVPDQAVQGELVEVPQRAQRDR
KAPDRLGVITGNWWELANVAVDSNEPQTYTQATTCEKAEYWRKAIDDEMN
SLVENHTWDLVDLPEGKNVVGSRWVFKEKRGADGEITKYKARVVAQGYSQ
EKGNDYDETFAPVAKYNSLRTVLAISNELDLDIHQMDVKTVFLNGELDAE
IFMKQPEGFVKDL Run BLAST on NCBI transcript from alignment at scaffold_38:76197..76988 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063112 ID=TCONS_00063112|Name=TCONS_00063112|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at scaffold_38:76197..76988 (Clytia hemisphaerica)
CTTTGTTGGTTATCCAAATGACAGCAAAGGATACAAATTGTTCAATTCTG
AAACCGGAAAGATGATCCGTAGTAATGATGTCCTGTTCTTCGAAAAGGAG
TTTCTGCTCGTTACCGGAAATTCTAAGGAAGAGGGCATAGTTGATGAACA
ATGCCAGTTTTATTTCGATAATGACTTTGTTCCTGAAGTCGCTCCTGTAG
TCGTGCAAGAGGCTGTACCGGAAGCTGTACCAGAAGTCGTTCCTGATCAA
GCTGTTCAAGGAGAACTTGTCGAGGTTCCTCAACGTGCTCAACGTGATCG
TAAGGCGCCTGATCGTTTAGGTGTCATCACTGGCAATTGGTGGGAATTGG
CGAATGTTGCTGTTGATTCCAATGAGCCCCAGACCTACACACAAGCGACA
ACCTGTGAGAAAGCTGAATACTGGCGGAAAGCTATTGACGATGAAATGAA
TTCGCTAGTTGAAAACCATACATGGGACTTAGTTGATTTACCTGAAGGCA
AAAATGTTGTTGGTAGTCGATGGGTCTTCAAAGAGAAACGAGGTGCAGAT
GGCGAGATTACGAAATACAAAGCTCGTGTCGTCGCCCAAGGTTATTCTCA
AGAGAAAGGGAATGACTATGATGAAACCTTCGCCCCAGTTGCAAAGTACA
ATTCGTTAAGAACTGTTTTAGCTATTTCCAACGAATTAGATCTCGATATA
CATCAGATGGATGTCAAAACCGTATTTTTGAATGGTGAattagatgctga
aattttcatgaagCAACCAGAAGGCTTCGTGAAAGATCTGTC Coding sequence (CDS) from alignment at scaffold_38:76197..76988 >TCONS_00063112 ID=TCONS_00063112|Name=TCONS_00063112|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_38:76197..76988 (Clytia hemisphaerica)
TTTGTTGGTTATCCAAATGACAGCAAAGGATACAAATTGTTCAATTCTGA
AACCGGAAAGATGATCCGTAGTAATGATGTCCTGTTCTTCGAAAAGGAGT
TTCTGCTCGTTACCGGAAATTCTAAGGAAGAGGGCATAGTTGATGAACAA
TGCCAGTTTTATTTCGATAATGACTTTGTTCCTGAAGTCGCTCCTGTAGT
CGTGCAAGAGGCTGTACCGGAAGCTGTACCAGAAGTCGTTCCTGATCAAG
CTGTTCAAGGAGAACTTGTCGAGGTTCCTCAACGTGCTCAACGTGATCGT
AAGGCGCCTGATCGTTTAGGTGTCATCACTGGCAATTGGTGGGAATTGGC
GAATGTTGCTGTTGATTCCAATGAGCCCCAGACCTACACACAAGCGACAA
CCTGTGAGAAAGCTGAATACTGGCGGAAAGCTATTGACGATGAAATGAAT
TCGCTAGTTGAAAACCATACATGGGACTTAGTTGATTTACCTGAAGGCAA
AAATGTTGTTGGTAGTCGATGGGTCTTCAAAGAGAAACGAGGTGCAGATG
GCGAGATTACGAAATACAAAGCTCGTGTCGTCGCCCAAGGTTATTCTCAA
GAGAAAGGGAATGACTATGATGAAACCTTCGCCCCAGTTGCAAAGTACAA
TTCGTTAAGAACTGTTTTAGCTATTTCCAACGAATTAGATCTCGATATAC
ATCAGATGGATGTCAAAACCGTATTTTTGAATGGTGAattagatgctgaa
attttcatgaagCAACCAGAAGGCTTCGTGAAAGATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063112-exon-scaffold_38-1491911889:76197..76988 | TCONS_00063112-exon-scaffold_38-1491911889:76197..76988 | Clytia hemisphaerica | exon |
| TCONS_00063112-exon-scaffold_38-1510915933:76197..76988 | TCONS_00063112-exon-scaffold_38-1510915933:76197..76988 | Clytia hemisphaerica | exon |
| TCONS_00063112-exon-scaffold_38-1575043694:76197..76988 | TCONS_00063112-exon-scaffold_38-1575043694:76197..76988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:76197..76988 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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