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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063123 ID=TCONS_00063123|Name=TCONS_00063123|organism=Clytia hemisphaerica|type=transcript|length=1317bp
TTTCGAACAAGTTCAATTCATTTGTATGAGCTGACTGATGGTAAGATGTC
CGTCTGCAAAGTAGAAGCAAGAAATACTGGTCATTAAAGACGTGATTCTA
GACAATTATTCTGCTGGTCAGTATATTACACATCGAAGCAAGACCCAAAT
TAACAGTCAGACAAATCATTCGTAAAAACATGGAACGAATCTGGATGGAC
GGTTATGAGACtggtaaaaaatcaaaaaagaaaatgaaaatatacgAACG
CGACGTTTCACATCTAGTCACTGATGAAGATTTCAGTATTTGTAGAGCTG
GCAGACTTCTACCTGGAGTATATTGTCAACATTTAACTTACGAAAATGGC
TCCTTCATCGGAACAAATAGAGAGTTACGTGGGAATGAAGGTATATTTCA
AATTGAGAGCTACGGTACTGGTATAGTTCGAATCAAATACGTTCCAACTG
GTCTTTACCTTATCATCAACGAGTTTGGAAGAATCAATGCCACTAATGAC
AAATCAAATCTGGAGACGTTATTCTATAGCACGTTAGAAGAGATAACGTA
TTTAGAAACTTTTGCATCAGCTAAATACTACATGAGAGAAGATAATGTTG
AGGGTGCGCCGAATAAAGATTTGTTAATTGGAGTCAAAGTAAAAGGTGAC
ACGTGTAAAATCAAAAATGCTAAGAATACGAAATCGGACAGTCGTAGCGA
TCAATTTTCCTTCCTGCAAGAATCTGATCAAagtttttattgcaaaagag
ACCGGTAGTATAACTGTAGGAAATTGTAGGTATATTTATATGTTTAAAGT
TTGATTACACTCTAAGGTTCAATAAGATTTGAAAGATGATATTGATGAAA
AATTCAGGATCTTCGGATAAACCTTTGAGGTGTGCCAATTGATAGTagta
tttttagaataaaaagaTTTAATCGAAAAATTTAATTAGTCagtatttat
tttctttatatatttatgttatttacaaaaaaagcccaaatttttcaaat
tacgattaaatttacaaaaaaaacgaTAACAAAATTTTGAACCTTTAATC
TGACCATATTAATGGTATATGAGAACTGGTATATGAGAACTGTTTTCGCA
GAATTAAGCTGAAAGGACTTGAACTAGATATATGCTGCACAAGATAACGT
TTATAGAAACCAACTATTTATTATTactgaaaattgataatttttttgta
aataaagagGGACCGGGGTCAAAAtacaataaattatttttgtccTAGTT
TCCCTCACTAAATTATTagacgaaaaaagatttttaaattggaaTATAGT
ATATATTATTATGTGTA Run BLAST on NCBI transcript from alignment at scaffold_380:40679..45400+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063123 ID=TCONS_00063123|Name=TCONS_00063123|organism=Clytia hemisphaerica|type=transcript|length=4722bp|location=Sequence derived from alignment at scaffold_380:40679..45400+ (Clytia hemisphaerica)
TTTCGAACAAGTTCAATTCATTTGTATGAGCTGACTGATGGTAAGATGTC
CGTCTGCAAAGTAGAAGCAAGAAATACTGGTCATTAAAGACGTGATTCTA
GACAATTGTAAGtacaaaactttttctttggaaTTATAAATTTCAAGGTG
CTCCTCGCGTTAAACTCTACAGACACGNtttttttctttgaattataaAT
TTCAAGGTGCTCCTCGCATTAAACTCTACAGACACGTATAAAATAATGAG
CTCATCCTTTGAAATGATACTTTAAACAAAGAATTTTACAAGGAAATAAA
CGAGATAATATACATAagcaaagcaaaaaaagtaagaaaaaaatcaGCCC
CACAGGGTATCAACTAAAGAGAAAGGCCTCACCAAAACGTTTGGACAAAT
ATACAAAGTATGATGAGCTTTTATATTGAATGATCTATACAAAACAGTCG
AGTACCTGTGTCTAAACTGTTTTCCTGTCCCTCCATTCCCACGTTTAAGC
TAAGATAACGTTTTTCTCCTTTcttaaaaataagaaacaaatcAGCGCAG
AGgctacatacatacagacacaTGCTTAGCTTTTGCAAAATAGGATAAAA
TATATATCACTTGTCTTACTAGTGTCAGCTAACACGGAATAACCCGCTGT
TTTACGCGAAAAGAactttattgataaaaaaagattttcgttaTAGTTTT
GAATTATAATAAAGTAAGTAAAAATTGTTTTGTCTCTGATATTTTATATG
GTACACTCCATTATAACGATTTTTACATGCTTACGAAAAATATTAAGTAA
CTTAAATAGAATCCTGAAcgtatttttttcttcagtaaTTCTAGAAGTGT
GCTACACAGTTTATGCACGCCATTTTGGATAATAATAATGGTTATAGGCC
CTGAcattttaatgacgtcataatttgtgTGAATATATTACGAGACGTCA
TAATTTATGATAGAGTTTTAACAAAAGGGGAGGGGTGCTACAACTTAAAA
AATAGTCTTAGCAGATAGATTGTCTAAGCAAACAATATAATTGGTTAATG
CTAACGAGGCTATTATTGTCAGTAGAGGATTAACGGtacttaactttttt
tataagaaaaaaatatactaaataaTTAAcatacgttaatttgtaattat
aTCTTTCTTAAttaattagaaatattttttcttcttctaaaTATTAACAT
TAGTTCCCCTTTAATCAATTAAcagtcttttttctttattaactTCTTTT
GTTGTATTatcattctattgttttatatTCAAAGTGATTGCGCTCTATGA
GGAAATAACCTATGCTCAGTCACCATATCTCCTTCTTTTCGAATCCATTA
AATCGTCAGAGCAGcatcatcaaaatcatcaaaaaaaaaaatctaaaatg
aatagaaataccccatttttaattttgcttaTATATTACTCTATTGTCTT
TCAAAATCAGTCAAGCCACCAATTGGGCTTGTTGTAAATGAAatgtaaaa
atagaaaaaaattatcatttaatGTTAATGTCCcaaaatatatttattat
aaagaaaagaaaaaaatctctgACAGTGACAATTAATGATTATGATGTCT
TCCGCTATACAATGTCTACGTATAAAAAGCAGGCTAATCATCGAGGCCTG
GTTATTAATACCTCTGATCCTTAACGAGGACACATCAACTGGCATAGAAC
aattttgtcgttttttgtcAGAATTTTGACAGACGAAATAGATAAAGGAT
TTTGATAATCTTATATACTTTTTGAGAcaagataaaattttgaaattcta
aatTCTTTGAAGATAAAAACCATTggcattttttgttttgaaagtcatTT
TGGTTAATTAAAGAACAAATATGGACCTTCACACTATCTTTGTTGTTTTA
ATTGTAAGTATATCATTTAATGAATATTCCATTCAAATTGGGTAATCAAA
TAACCTTCCTTTTTTAGGAAAGAATTGCCCCTTTTGACCTTCTCCCTTAA
AGAATTATTTACTGGAtgtacattttatttttcatcaatAATAGATATGC
TTATTTTATGATCAACCAAGCACCAAtaagttttaattgtttttgcaaaa
tcatttttttgtaattaacaAACGAACGATAATGCGGACAATTAGATACT
AATTTCAGGCACGGACAGGATTTCCTTGAACTGCTTTCGGCAATTAAGTT
ACCAAAAGTACAAaccaaagaaaaaacaaacatatttTTAGCATGTTTTG
ATTAATTAAAGGTTAATTACTTTGGTTTTTAATTACCTCTGCTTTGTCaa
taatgttttaattttgtgTTATAGTTTTAAAACTTCGAGGCTCAAACAAG
GAAGTCTGAATTGATAGGACGCCATATTAATTGTTCAActtaaaatcact
tacaaaattttttttggaattctttTTTAAACAGATTCTGCTGGTCAGTA
TATTACACATCGAAGCAAGACCCAAATTAACAGTCAGACAAATCATTCGT
AAAAACATGGAACGAATCTGGATGGACGGTTATGAGACtggtaaaaaatc
aaaaaagaaaatgaaaatatacgAACGCGACGTTTCACATCTAGTCACTG
ATGAAGATTTCAGTATTTGTAGAGCTGGCAGACTTCTACCTGGAGTATAT
TGTCAACATTTAACTTACGAAAATGGCTCCTTCATCGGAACAAATAGAGA
GTTACGTGGGAATGAAGgtaaattttaaggattttcatAATACTCCGAGT
ACCTTTTTAGGATCAAAACCAATGTTGTTCTAACACTATTATTCAAAGAA
TTGAATATATAcagttcaaaatttttaagaGCCATTCTGATAATACCTGA
GAAAAGCGACGATAAAGGCAACACATGTTCAAGTCTGGTGACAGAAGGAA
TTCCAAGCTTTTTAATGACAGTTACACATAGATCTTATGACAAATTGTGA
TAGAATTGATGATTGAGACATTAAAATCGTTAAAATTCATCAcagttttc
agaaattttaaatgCTTAAAATACCATTTAAAAGataaaactttcatttt
gaacTAGTAGGGCTAGCCTTTAGAAAAGAAAGCAAGATATAGTGACGTAA
TAGAATACATCCTTTAGACATAATTGGAATGTCTGCCTAATAGATGATAC
CTAGTaacctttgtttactttttccgTTCTCATGCTTTTTATAAGTCTAC
ATAAGACATACAACAGGCAATGCCTCAGGGTTTCCTTCTTAAATACCAAA
TCAATAGAGTAAAGGATGTCTATCAAAATTCAATACTGCTTTCTGAATTT
GTTAATGACAAaacaaaacgcttaaaaataacTAGCAGTTTCACTTGAAA
TATGTCCCTAAAAATTCAACAGCTATGATATAATATGATTATACCATTTA
ATTTAACCCTTCAAACCCAGGAGACTTGCTTACACGTTAATCTGTCAATA
TATCAAGTCCTATAGCTCCTGATCACTTGATTTAGAAGGGCATAAACCAA
TCAAAAAATGTTACGGTCTGGAAAAGTTAAATATCATGAAGACCGCTAAA
TAAGTTGTTATTTCGTTTATTTCAGGTATATTTCAAATTGAGAGCTACGG
TACTGGTATAGTTCGAATCAAATACGTTCCAACTGGTCTTTACCTTATCA
TCAACGAGTTTGGAAGAATCAATGCCACTAATGTAAGTATCTTAGAAGAA
TTTTCACGGTGAAACCTTTTTACCTTTCCCAAGCTACTGTTTCAATAACA
TCTTAAAATGATTAATGTcagatttttgtgaaaactgAATTCTCAGTATC
TACATAATATTGAGATTGAGGAATTTTTTGCAGCATCCTAAGTTATTTGA
CCTAAGTAAGAGTCTCGAATTAACCATAGTTTGTATGTTTTACAATTTTC
AGGACAAATCAAATCTGGAGACGTTATTCTATAGCACGTTAGAAGAGATA
ACGTATTTAGAAACTTTTGCATCAGCTAAATACTACATGAGAGAAGATAA
TGTTGAGGGTGCGCCGAATAAAGATTTGTTAATTGGAGTCAAAGTAAAAG
GTGACACGTGTAAAATCAAAAATGCTAAGAATACGAAATCGGACAGTCGT
AGCGATCAATTTTCCTTCCTGCAAGAATCTGATCAAagtttttattgcaa
aagagACCGGTAGTATAACTGTAGGAAATTGTAGGTATATTTATATGTTT
AAAGTTTGATTACACTCTAAGGTTCAATAAGATTTGAAAGATGATATTGA
TGAAAAATTCAGGATCTTCGGATAAACCTTTGAGGTGTGCCAATTGATAG
TagtatttttagaataaaaagaTTTAATCGAAAAATTTAATTAGTCagta
tttattttctttatatatttatgttatttacaaaaaaagcccaaattttt
caaattacgattaaatttacaaaaaaaacgaTAACAAAATTTTGAACCTT
TAATCTGACCATATTAATGGTATATGAGAACTGGTATATGAGAACTGTTT
TCGCAGAATTAAGCTGAAAGGACTTGAACTAGATATATGCTGCACAAGAT
AACGTTTATAGAAACCAACTATTTATTATTactgaaaattgataattttt
ttgtaaataaagagGGACCGGGGTCAAAAtacaataaattatttttgtcc
TAGTTTCCCTCACTAAATTATTagacgaaaaaagatttttaaattggaaT
ATAGTATATATTATTATGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063123-exon-scaffold_380-1491911889:40679..40785 | TCONS_00063123-exon-scaffold_380-1491911889:40679..40785 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1510915933:40679..40785 | TCONS_00063123-exon-scaffold_380-1510915933:40679..40785 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1575043694:40679..40785 | TCONS_00063123-exon-scaffold_380-1575043694:40679..40785 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1491911889:43113..43395 | TCONS_00063123-exon-scaffold_380-1491911889:43113..43395 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1510915933:43113..43395 | TCONS_00063123-exon-scaffold_380-1510915933:43113..43395 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1575043694:43113..43395 | TCONS_00063123-exon-scaffold_380-1575043694:43113..43395 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1491911889:44254..44360 | TCONS_00063123-exon-scaffold_380-1491911889:44254..44360 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1510915933:44254..44360 | TCONS_00063123-exon-scaffold_380-1510915933:44254..44360 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1575043694:44254..44360 | TCONS_00063123-exon-scaffold_380-1575043694:44254..44360 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1491911889:44581..45400 | TCONS_00063123-exon-scaffold_380-1491911889:44581..45400 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1510915933:44581..45400 | TCONS_00063123-exon-scaffold_380-1510915933:44581..45400 | Clytia hemisphaerica | exon |
| TCONS_00063123-exon-scaffold_380-1575043694:44581..45400 | TCONS_00063123-exon-scaffold_380-1575043694:44581..45400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_380 | supercontig | scaffold_380:40679..45400 + |
Blast
The following BLAST results are available for this feature:
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