TCONS_00063186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063186
Unique NameTCONS_00063186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063186 ID=TCONS_00063186|Name=TCONS_00063186|organism=Clytia hemisphaerica|type=transcript|length=3300bp
gaaaaatcaaagaatttccatcaattttttaaaatcgACGAGACGATTTT
TATTGAAAGAAGGAACTTTATTATCACGTCGAAACTGAAGAGCTTTGGTT
TCTAGTTCCTTAAGTGAATTTTTGGGGATNTTATCACGTCGAAACTGAAG
AGCTTTGGTTTCTAGTTCCTTAAGTAAATTTTTGGGGATTCTAAAAACAA
TCATGCCCGAGGAACAAGATTTTACTCAAGTTTCATCCTACACGAATTGG
ATGAAAAAGATGTCCGATAAAATAAAGAAGCATAACGAATTGAAAAATAC
GCAAATGACAGCAACAATAAATAATGAtatcaagaaaaatgaaaacagta
GTAAGATGAACAATGAAAATAGAAGTAGAAGTGAGAAAAAGGGGAAAGAA
GAGATTTATGAGAAGTCTTGGGCGGTATGCCAATGTCATATTGAGGGAGA
AGAAGACTTTGCGGATGAAAAGAGAAGAAATATTACATCTTCTTTACAGG
AAGATCGACAAAAACGAATCAGAAGACATATAAATTCAACAACTTCAGTA
GAAGAAACAGAGAGTATAGCAGacgatttttcttcttctccttcgACTTC
TTTATGTTGTAACATCTGCCtcaattcttcatcaaatttaacTACAAAGA
CGACATCAACTTCAACTTCTTCTtcaaaaaaacatagaaaaagaaaagga
aggaATGCTCACCGAGTTTTACTGAATAATCATCCATCTCAAAAGCAAGT
GTACAGTAGTTATAGCACTGGTCaacaaaaaatcaacaaaaggtCCTCGG
CACCGGGAGATACAAGATTTAATGGTGGATCTAGGACCCATGAACGTATT
ATTGAGAATTCATTTGATAACGATGTTTTTGAGGATTGCTTTGTAGAAAA
TAAATTCGCTGTTAAGAAATCATTCAGTTACGATAACGCTATATTGAAAA
ATTCATTTGCTCGGGAAAAAGAAAATCTACGGAAAACATTAAGCGGCGAG
AAACCGATCCGTGACGGCGACGGGCCGTTTGTTATTGATAATTTCACAAG
CCTCAACCACctacaaaaacaacaagaaaagaGAGATTTTATAGTTTATA
AAAATGGGGCACAAAATGATAATCGAAACTCTTCAGTTCCTATAGACAGA
CGACCGCAATCAGAGTATGGAAGGCGTAAACATGTTACGTATGACGTAAA
AACGCTGTATCGCGTAAATAGTGACGCACCACCGCGAAGCTGGACGTTGG
ATATTAGTCGTAGCAGTGATTCAGACGATAATATGTTATTTCCGAAATTA
AGAAAGAATTTCAAATTTGGGACTAAACCAAATGGTAGGGCGGCGTCGGA
TGGTTGTACGACGCAAGGGAGCCGGAAGGGCTCACAACGCCGTACAACAT
CCGCAGAATTCATACAGGAGTTCTTGGGGCCAGCTGATACGCCAGTGAAC
GCAAGACTTTTTGGCGGCAAGAAAGGGGTTCAGTATGAAATTGAAAGAGC
AAAATCGTATGGTTATGTTATCCATCCTTGCAGTAAACTAAGgcAGTACT
GGGACCTACTTATAATGACAATGTTAGTTCTTAACATGATGGTACTCCCC
TTGGATATCGCTTTCTTTGATGATAACTCATTGATCAGTTTTCACGTTAT
TTCGGACACTCTATGTATGGTTGATATCATATTGAATTTTCGGACAGGGT
ATCAtttgagaaaagaaaaacatgaatTTGAGTTAGGCCATAAGAAGATT
GCAATacaTTACTTAAAGACTTGGTTTACACTTGATTTAATAAGTTCATT
GCCACTGCACTACATTTTATTAGCAGTATCAGGGCAGAATGTTACTCTTG
GATTGAAAGGCGCCTCAAGAGCATTAAAGTTCTTGAAAGTCGCCAAACTA
CTCAACCTACTAAAATTGTTACGTTTATCGCGCATCATACGTGGCATTGC
ACAATACGAAGAGGTTTATTGTGTGACCACAGGCTTTATTCGTTATATCA
AGCTTGTGTGTATGATGTTAATGGTTGCCCACTGGAATGGTTGCTTGCAT
TTCTTAGTACCCATGCTTCAAGATTTCCCAGAAAAATGCTGGGTCCAAGA
ATGTAAAATCGTGAACGAACCATGGTACGTTCAATACGGTTGGGCGTTAT
TCAAGACATTATCACATATGCTTTGTATTGGGTACGGGCGTTATATTCCC
GCCCTTCTAGATGAGGCGttaataacaattttcagtatGGTGACAGGGGC
AACATTCTACGCCCTTTTTATTGCTCATTCAATGGCGTTTATTATTCAAA
GAGATTCTTCCAAATCTACTTACCAGGAAAAGATCAAACAAATAGAAGAA
TATATGCATCACCGAAATGTTCCTCcagaaataaagaaaagaatttcaaa
ttattttgaacATAAGTATCATCAAGGGAGATTTTTCGACGAACAAGCAA
TCATGTCGGTCATTGGAAAGCCTTTGAGAGAAGAAATCGTGCACCACACC
TGCAAAGACTTGGTTGAAAGTGTCCCGTTCTTAAAAGCTGCATCACCACA
TTTTGTCACTGCTGTGCTCGACAGATATTTGTATGTTAACAGATGATACA
AAACACATCATAACAGTTGAAGCCCGAACAACATGTGATTTATTCTCACT
TTCCTACAAGACTTTAGCAACATTATTGATACAGTACCCTGAAGTGAGAC
CCATACTTGAACAAGCTGCTTTAAACCAATTGATGAATATCACACAAACG
ATTGAATTACTGAACGCTGCACGAGAGAAGCAGAAAGAAAAGAACGGGTC
GAACGGACCGTACGGAAGTAACAATAATAGTCCAGTTGTTAAAAAGCGGT
CAACATTATCTCGACAGAGCTCATTGAACCAACTCAAGGAGCTGATCAAC
GGGACGGTTGAAACACTTGctgctaaaataaaaacattcaaagaaGAAAA
CGACGTCATTGCTGAACGATTCGAAGACTCGATGACGTCACAGGAAATGA
TGCCGTCACAGGACAACACGCCTTGCAAACAGAAGAAAGATGAAAGTGCG
ATTATTGTTGAAAATGAGCTTGAAGAAGGAACGCACAAAAATAAAGACAG
TGACCCTACTACTGGCTCTGACCATGGACTCGACGACCCGACCAAAGACG
ATTTTCATGTGTCGACCTCGTTTTAAAAAGGTTACCAAGGTCACCAATGA
GAACCTATTGCAAAATACGATTCGGAGATTAGTATTATCTAACCAGTCAC
GGGACACCTGTTCCTCTATATAGCcatagtccttataaaaaacactatgg
Run BLAST on NCBI

transcript from alignment at scaffold_384:26765..40806+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063186 ID=TCONS_00063186|Name=TCONS_00063186|organism=Clytia hemisphaerica|type=transcript|length=14042bp|location=Sequence derived from alignment at scaffold_384:26765..40806+ (Clytia hemisphaerica)
gaaaaatcaaagaatttccatcaattttttaaaatcgACGAGACGATTTT
TATTGAAAGAAGGAACTTTATTATCACGTCGAAACTGAAGAGCTTTGGTT
TCTAGTTCCTTAAGTGAATTTTTGGGGATNTTATCACGTCGAAACTGAAG
AGCTTTGGTTTCTAGTTCCTTAAGTAAATTTTTGGGGATTCTAAAAACAA
TCATGCCCGAGGAACAAGATTTTACTCAAGTTTCATCCTACACGAATTGG
ATGAAAAAGATGTCCGATAAAATAAAGAAGCATAACGAATTGAAAAATAC
GCAAATGACAGCAACAATAAATAATGAtatcaagaaaaatgaaaacagta
GTAAGATGAACAATGAAAATAGAAGTAGAAGTGAGAAAAAGGGGAAAGAA
GAGATTTATGAGAAGTCTTGGGCGGTATGCCAATGTCATATTGAGGGAGA
AGAAGACTTTGCGGATGAAAAGAGAAGAAATATTACATCTTCTTTACAGG
AAGATCGACAAAAACGAATCAGAAGACATATAAATTCAACAACTTCAGTA
GAAGAAACAGAGAGTATAGCAGacgatttttcttcttctccttcgACTTC
TTTATGTTGTAACATCTGCCtcaattcttcatcaaatttaacTACAAAGA
CGACATCAACTTCAACTTCTTCTtcaaaaaaacatagaaaaagaaaagga
aggaATGCTCACCGAGTTTTACTGAATAATCATCCATCTCAAAAGCAAGT
GTACAGTAGTTATAGCACTGGTCaacaaaaaatcaacaaaaggtCCTCGG
CACCGGGAGATACAAGATTTAATGGTGGATCTAGGACCCATGAACGTATT
ATTGAGAATTCATTTGATAACGATGTTTTTGAGGATTGCTTTGTAGAAAA
TAAATTCGCTGTTAAGAAATCATTCAGTTACGATAACGCTATATTGAAAA
ATTCATTTGCTCGGGAAAAAGAAAATCTACGGAAAACATTAAGCGGCGAG
AAACCGATCCGTGACGGCGACGGGCCGTTTGTTATTGATAATTTCACAAG
CCTCAACCACctacaaaaacaacaagaaaagaGAGATTTTATAGTTTATA
AAAATGGGGCACAAAATGATAATCGAAACTCTTCAGTTCCTATAGACAGA
CGACCGCAATCAGAGTATGGAAGGCGTAAACATGTTACGTATGACGTAAA
AACGCTGTATCGCGTAAATAGTGACGCACCACCGCGAAGCTGGACGTTGG
ATATTAGTCGTAGCAGTGATTCAGACGATAATATGTTATTTCCGAAATTA
AGAAAGAATTTCAAATTTGGGACTAAACCAAATGGTAGGGCGGCGTCGGA
TGGTTGTACGACGCAAGGGAGCCGGAAGGGCTCACAACGCCGTACAACAT
CCGCAGAATTCATACAGGAGTTCTTGGGGCCAGCTGATACGCCAGTGAAC
GCAAGACTTTTTGGCGGCAAGAAAGGGGTTCAGTATGAAATTGAAAGAGC
AAAATCGTATGGTTATGTTATCCATCCTTGCAGTAAACTAAGGTAGGtgt
agtacacgtttttttataagaacaaactatataagaacataaggcttcgc
tggcgaaaatactaagaacaagttaagaacattttaaggcttcgcgcgac
tctaaaacacccgatttcttaggaaaatggacaagaatacttaaaaaaac
agtgaaaattagaacatgttaagaacattttaaagcttaaaactcaaaaa
gttaagaacatccaaaggcttcaaaaattgtgaatgttcttataaaaaaa
cgtgtacagctTTTTCATACCCACTATTATTAGCTCCTTGTTAATTATTC
ATTGATATGAATGTAATGCGCTAAAAGTCCCGTCGCTTAGAAAAGAACCT
AGCGAATCGTTTCGATCTGGCAGTGATATGATGGGGTTGAAAGACAGTTC
TAACACACATGTTTATAGTTTATATCGTTTGATACCACTCCGAAAACATG
TATTGTGCAGTGTGTctcaaaactttaaataaaaattgtgtccgcctttt
ttgggacacattGTAAACGCCAGGTTCTTTTccctatttttcaatttcac
atttttcaaagaatacgCTTATTCTGGAAAGTATAAAAAAAGCCGAAATC
AAATCTGATAATGGTGGGTATCGGCTTGAGCTTTCTTTTCTCACTaaatt
cttcttataaaaaaaggtggaCGAGCCAATTAAATTTTTACCAAGCATAA
GCTTCCTATCCGAAGTGATTGTGATTTTGAGTATTCTTTTAGCCAATTCT
GAAAATGAATCTTGGCGAGTACCGGCTTTCCAATTTGAGACCAAGTTATA
TAGTAAAGAAAGAAACACACTGGTTTAAGCTAGGGTTTTATTTTTCACTA
GCCACAACTTTCCTTATGGTACAAAACTCTGGTTTAGTTGCCTTTTGTTT
CAAGGGATAaacaaaaagtaagaataaatcaataaaaagttgagaactaa
ttttcaaaaaagggtaaaaaaatattcaaaatcgaAACCTATTACAGCAC
GGATAGGAATAGCTTATGCTCAGTGTAAATCTAAtctgttctttttataa
gaacaattataTTAGAAAAGGAGGACCTTctaagtcattaaaatcataag
AGATACTATTGAACATAAGGCTGCGATGACTggaatgttaagaacatttt
caggctttttcttaaaaaaatagcaaaaatactcaaaaatggtgaaaaca
acattttaaagcttaaaactcaaaaagtcatgaagctccgaaggcttcaa
actttttatgttcttataaaaaacgcgtaTAACCTAATCAtagttaagaa
caaattaaaaacttcCAGATAACCAAAACCTTACTGATTCTtaataaaaa
aagcgtgcattTGTAAAAAAACCGTATGGGGGAGTAAAAAACCTTAAAAG
TCAAGACACAACACAGTCAGTATGTAGAGGATGTcaagaaaacgaagaaa
aaaaatatttttattgacaAATTATACATGACATAGAAATTTGTATttca
ataaagagaaaaaaagcttcttggattttattttgaaataaaaaaagcaa
gAACCCCCTTTCTTACTTTAAAACATTTCTAAATATAGGGTGTGAGTTTC
TTGTGTCAAAATAGACTTTTCTTGGAAAGAAAGACGCAAAGAGACAACTC
TGTAATTTTAAATACCCCAGAATTTAGTCCTTGAGTTCTCATTTGGGaat
atttttagaattatttagCCTGAACATCACAAAATATACGAATAATTGAG
GCTAAGAAAGAGTTTACCTGATAAAATATACAggcaaatttcaatttcta
tAGAATGTTAAGTGGAGAAGGGGAAAAGACATGGAAAATGAATAgaatat
tttttagtaaaattttaGGCATAAAACTgcctgaaatgaaaaatataaaa
ctgaGCCTTGTCTGAAATTCACAATGTGTTTTTTGAATGGAATACtacct
aaaatttgaaaattaaaaaagtttcatttttcgttCGTAAAAAACTTCCC
TTAAAAACTGAATATAATATAGAACGCCATAGCTGCCATAAGTGCAATTT
TTATGTGCTCTTTTTTCATTATGAtgcgctcttttcattcgctcttttCT
TTCGGTTCGCTCTTTTATTCGCTCTTTCGGTTCGCTCATACGCTCTTTTC
GTTCGCTCATTTGCTCTTTTCGTTCGCTCATTTGCTCTTTTCGttcgctc
attcgctcttttgattttccaatgtttccccgattcattttctgaaaaat
cgggtaATTGTGTGAAACTCAAggaaaaatttgcgtgaatgcgtgaattt
tgaCAAGccattgcgtgattgcgtgaatcgAGGGTAAGTTGGGGGGGGGC
TCAtgaattaataaataaatacaGGATCATTAGCTAAATCATAGATCACT
ATAAACGACCCGCAGGAGCTAATATCAAAACGGATATTTCAATCTACTCA
CTTCTTTTCCTTTTCAGATTATTTAGTAGGGAAAACCTTTCGTGtggttt
ttcaagaaaaacgtcaaaaaaatgtcaatttcttCATGAAAATGTCTCCA
GATTAAATTTCTCTGCTTTCGATCTTTTGGATATTTTTAGAAGAGTTCTA
CATATTTATTGCgaaattttaggaaaaattatTAGAAAATTTCATAACTT
TTTCCCATCACGTTTCATAGGGGAGATTTTTTTAACTCATTTTAAATACA
TTAAAAAATGAGGGACCTTTCGACACCAACGAAATAATGTTGAAAAATAT
CAATGTTTTAACGCTCAGCTCAACTACATTCGATTCGCCATCTTGTAAAT
ACCTATTTTTCACCCTGTTGAAATCAAACAAATATAGGAACAAATATATT
CGAAATAAAATCTCTTGAAGGGAAAAACTTAATCGGGAAAAGGTTAcgag
atttttggaaaatctttctgGTCGACTGCAAGGCCCGGGGGgcgcactgg
gtttgcggactgacggtatgtgcgggccaaaaataggcttttaaaattgc
acccttacagtgcaggaaaataNNtagcatttttggtcaaaatatctaga
tttttcaagaattttctgaaatttctacccttacagtgcatctctagttt
ttccgacccttacagtgcatttataaacatattggaaaaggtacccttag
gacccgcacatacccgtcggtccttttgcccagctgccccccggGCTGCA
AGGGTATGATGACAGAGATTTTAAAGTAACTTAAGCCTGTCAGGCGGTCA
AGGCTAGACTGTATAGTGTATTGTCTACGCATTTGTACGCAGCAGAAAAA
TCTATTTTGCCGGTATAGACGGTAAAAAAAGCGGATAGATTCATGAAATA
CGAAAGAAATGCTTAGGCAACATTCGTTATGGGATGGGAAGTAAAGGCTG
TAACCAATTATATAATTAAGCAATGAGGGACGTGTCCCTTTTGGAccaaa
tttgaagatttttcgtCCCCTTTAGGATATGACTTTTTCGTAAATTTTAG
TAACTCCATCGGTCGCCAAGTTTATAATTTCCCAGTTTAAATGAAAGCTT
TTTTTAGTGAATTAAGAAATTATTCAAAAGTAACCAGACGAAAAACTGTT
ATTTCATCGCCCTTAATCATAAATTATGATTGAAGTGATCCCCGTAAATA
TATTTGTCTCCAAAAACGATCAAAATTCTTGACCAAAAAAGGATTAGAAT
CGTTTTTTATGATTTCTGTTTAgtaaaaaaacctgttttccaGATAATTC
CCTTGaaaagcgaaaaaataaaattttaaaatccgaCAAAGTCTGACAGA
GGGTTTCTTATGCTTTATAAGCATTCTCTTTTTACAAGAAACTGTAAATT
CTAACAAATACAATGGAGTCTTGAACTCTAACCTCTATaacttaaaaatt
tgaaattaactCGAATTTCCAtatttcgaacaaatttgtgtacCCTGTGC
ATGTCCGGGTTATCGAGTTTCCACtatattaagggctctgaccatagtga
atttttcataattgccgtgtttaaaatgtgttttctgactgatgtaacca
acaaaactatggcatgttatacattttctgttagacaaactattccaaat
ctgaaaatccaaaaattgcattgaaaaagtttgatgaagaagaaaatgaa
gacttttgcgaggaagagtatttcaactttgaagagcttagtttcggcga
agaaaaaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNcacatacccgtcggtccttttgcccagctgcccc
ccccccgggctttgcAGACActaaaacacctattttcttaggaaaattga
caaaaatgtaGCCTGTTGAAcaggaaaagtttttattagaaagttttttt
ttaatttcaggcAGTACTGGGACCTACTTATAATGACAATGTTAGTTCTT
AACATGATGGTACTCCCCTTGGATATCGCTTTCTTTGATGATAACTCATT
GATCAGTTTTCACGTTATTTCGGACACTCTATGTATGGTTGATATCATAT
TGAATTTTCGGACAGGGTATCAtttgagaaaagaaaaacatgaatTTGAG
TTAGGCCATAAGAAGATTGCAATacagtaagttttttttttcaattctta
tttctgtcaaaaatatcaaattttgaaattcttactTAACCGTGAAACAT
GAGATTCAAtatagaggcgaaactttaacctttctcaggcaagagaaatt
gaagccacttatttcccttccaaaacgcgcatagaacgcgccgtaatcat
ggcAACAGATTGTATatagtggttcctttgttttggaggactacattttt
taaaatctaacgatagattttagtttcaatccggcgtttgtgtaagaACT
ACGCACCGcctagatgggaaataagtgctttcatttcccatccaggagtc
tcgcctctagcccttcgggcttgaaactcaatgcgtGAAACACTTGAGAA
ATCGAAATATATTCTACAGCTATGTCATATGTTATACTAGAAAGGCCTTT
TACAttatagaaattaaaaaaagagtgCGAAAAACCTTCCAGaggttttc
attgaaaaattgagCTTATAAAAAGGCACAAATAGGGCAGAAAGTCGAAT
AATCGAGCGTCCTTTACGAaagctttcttgattttttcGTAATACGGAAT
CTGTGTTTGTTATTTAGCATCCTTCACTGACACTGTCACTAAGTAACTAG
AGTGTGCAATTAATTCTCTCAAGTGCAAACTATCTACAATcggtgacaaa
atacttggcacaaaaaggaaatccaccggggtgttttgaaaccacaatcg
atttgcaagtgctctaaagtaggttggaagggtagatttttaacgctaga
cttaagacgaccttaggatctgaggatccaaaagttcaaaaatggtccag
tagggatTGAAAtgtagcctagaaaccaataaatccctcccagatcgaaa
taatcgttgaaatcaagttgaaggcctgaaattgacattctcgctcgaac
ttcaattttcgaaatatggtaaattagccaaaagtgccgaTATGTTATGG
CACCGATTGTAGTATTTTTACATGATATCTGTTGAGAGAAGTCACCAAat
agatttcctttctttcTTTAGTTACTTAAAGACTTGGTTTACACTTGATT
TAATAAGTTCATTGCCACTGCACTACATTTTATTAGCAGTATCAGGGCAG
AATGTTACTCTTGGATTGAAAGGCGCCTCAAGAGCATTAAAGTTCTTGAA
AGTCGCCAAACTACTCAACCTACTAAAATTGTTACGTTTATCGCGCATCA
TACGTGGCATTGCACAATACGAAGAGGTTTGTATTCGTTCAAATATCATA
CTTTTCATACAAAACTCTTATAATTTTGATTGGCTGATAGTGATAATTTC
ATTTTACGGCTTCACTATTAGAGACTCCCCTCTAGGCCCTTTTAAAATct
agctttaaactcaatgcctTCTACTTTTAGACTGTATTCACCTTCTTTTT
TGATTCACAGGTTTATTGTGTGACCACAGGCTTTATTCGTTATATCAAGC
TTGTGTGTATGATGTTAATGGTTGCCCACTGGAATGGTTGCTTGCATTTC
TTAGTACCCATGCTTCAAGATTTCCCAGAAAAATGCTGGGTCCAAGAATG
TAAAATCGTGGTGAGTAAGTATTTTCGTGGCGATTGGGATGTTTATTTGT
CCACCCTTGTCTCACAAacccggtggaattttttcctacagcggggataa
aaatttctgtcAAAATCCAAACGGTGATGGATCTGTTGCTCCAGGCTTCT
TACATTAAATTGCGGATGtagatgaaatcaaaatcaatttaccAGTGGGG
TGGGGCTGTAGGGTAGTGTATTTTTTTTCACCGGGAACGAAATTTTGAtc
gaattttccagtgggttgagtaacccaccgggtctgtaacacaggggtgt
atttttcgttgtaaattttttgattattGATATTTTGACGTGCGAAAAGC
ATGGATTTTTAGCATCCGTGAAAGCTTTGTAAAATGCTTAACATGGTCAG
GTATAATGTCATATTTTGGTCAAGTTCGATAGTTACTAATAACATACAGG
TCGATAGTGAGAATTTTTAGGTCATAAAAATCCCCTGTCTCAATTTAAGT
TTAGATTTTTATTCCTTAGAACGAACCATGGTACGTTCAATACGGTTGGG
CGTTATTCAAGACATTATCACATATGCTTTGTATTGGGTACGGGCGTTAT
ATTCCCGCCCTTCTAGATGAGGCGttaataacaattttcagtatGGTGAC
AGGGGCAACATTCTACGCCCTTTTTATTGCTCATTCAATGGCGTTTATTA
TTCAAAGAGATTCTTCCAAATCTACTTACCAGGAAAAGGTATTTCTTTAA
GCCATGACCAGCTGATAACTTCAGATAAAATAAGCCGAAAACaagttttt
gagatttaaaCATTTTGTCTTTCTTTGAGTATCAAGGAGCCAAGATGTCG
TTTTTCGGACTTGCTTTCGTCTTATGTATTGATTTAAATTGATAACTTTA
ATGGGATAgatttttgcggggattaattttcgcggttgagctcatccgcg
aaattttaagatttcgggGAGACTTGATTTCGCAGATGACATTAaggaga
caatattttcatgattttgtgtctttttactgccaaattataccgaaata
cgcattattagcgcttcgTTGATGCCAGTTAACATTTCACAAGTAGTTAT
tcgacattttttgagttttgttcaGAATGATTTCGCgaatgacacccaaa
tccgcgaaatttaatcccagcGTAAATTTACCCAATTAAAGTTTATAGTG
TTAAAAGCAAGTTATTCCTCTCAACCGAAAAAGGACTTTAAatttaaaac
aacaaattaggCAAAGTTGTTCAAATTTGATGGACTCAGTTCGTTTAATT
ATGAAATGGAAAAGAATCTTTCGCACCTCGCTGGATTTTAAACACAGTAT
CAGGACAGGATAATAGATATCTGTTgggtaaaatttgaataaatccAATT
CAATTTTCACCTCCGAAAAATGACTTTAAAACAATAAACCAGGCAAGATT
GTTCAAAATTTGGAGAATTTCGTAGAAGTTGGAGATGAAAAAGCCTCTTT
TGGTACCTCGCTGAACTTTAAGATAATTGATCTATGTtgatttaaatttg
aataaatccAATTCAATTTCCAACCTCTTAGATCAAACAAATAGAAGAAT
ATATGCATCACCGAAATGTTCCTCcagaaataaagaaaagaatttcaaat
tattttgaacATAAGTATCATCAAGGGAGATTTTTCGACGAACAAGCAAT
CATGTCGGTCATTGGAAAGCCTTTGAGAGAAGTAAGTATAGGTGTGAAAG
ACTGGCCTAAAAACGGACGTTAATCTACAGAGGaaggtttccccgatttc
ccgattaaGCAATCAAATTAGATTGATGTATCAATAAAACTTGAAACCCT
ctaaaaatgatgaaaagtttCTCATAACTCTCATAATAACTCTCTATTAC
TTACTTAGAATATTAACTCTACTGAACTACTCTGACAAACTCAAGCCAAA
CAGTATACTGGCAGGGTAAATATTTGGCAAGAAACTCTAAAAAAACTCTC
TTTCACTTCTCATACATGATTCTTCAAGTCCCTCTTTCGCTGAAACGAAC
TTTATTCCCTAAGATTTCTATATTTGAACCCAAATCTCTCTTTAGGTTTT
GGATTATATCTAATGTAGTTTTGATATGGAATCCTTGCTTTTCattcttt
aaaatatttacatcaacaaattttcctttaaaaatacaaaaaatttgtaa
aaaacaaactttccTTTGAAGTAACACAGTAACatatttccttcaaaaat
acaaaaaaactttaattcaaaaatacaaaaagactttcgtgcgaaaaaat
agcaaaaaaaggatttccttcaaaaatacaaaacagacttctcaaaaata
caaaaagaattCTTTCAGGAAGGGAACATGAACTTCCAAAAAAGGTTTTA
TCTCCCCAAAGTAACACGATAACTTATTTCTAAATGTTATCGGTACTTTA
CGATGGGaaaaaaaaatagcaaacaAGCTAGATCATAATCTCAAAGAGCT
GTCAATCAAGTTTCTTGTATCAATCAACAGTATCAATCAACAAGCTGTAA
AGAAATTCTTTGAAAGGCATTTGCACGGTTGCTATAGAgatattcaatta
tttttaaatctaACTCTCCATATTAAAGCAAGCTgtgatggccgagtggt
taaggcgttagacttgaaatctaatgggttCTACCCGCGCAGGTTCGAAC
CCTGCTCGCAGCGATCTAATCTTAATTTTCCTAGGGATAAAATTTCCatc
ttgttttattattttaagaAAAGTTCTTAACTTTGGAATCGGTCTGTCAC
ATTCAGGCTCAAACTTTCACTTACCATCGTCCCGATTTTGCTGAAAACTg
ataatattatttttcttcaaatactTGTCGGCTATCACGGCTATACAAGT
CACAAGTCACGGTTTTgattaaaaagacaatacaaaaaAACACATTCTTT
ATAAGACTAAACTATACGTattatcaagaacaagttaagaacatttaaag
aatTTATGGCCTCTAAAAGACCTAAAACAGCCAATGTCTTAGAAAAATTA
CTATCAAAATGGTGagattaagaatattttaagaacattttcagcatttt
ttaagattaaaagccaaaaagttaagaaagctTCCAAACATTTTGAGAgt
tcttgtaaaaataaaacgttTATGTACTATTTCCTACAAACCCTTTTAAA
AGTGTAAAAGAGGACACTTTTTAACACTCCAATGGTGCCCACAAATAACA
AGTTGCACTGGATATTTAcacttttgaacaaatttctCTCTACAGGAAAT
CGTGCACCACACCTGCAAAGACTTGGTTGAAAGTGTCCCGTTCTTAAAAG
CTGCATCACCACATTTTGTCACTGCTGTGCTCGACAGGTAAAGCCTCTac
acttttcttttataaaaaaacaattttataagaacaatgagggcTCAAAA
Tccctaaaaaataagaacaatttaagaacaatgctgagccttaaattatt
caatttcaagcaattttggGGTCAACGTAGTAAATTGGGTATAAATCCTA
AAATACTTCAATTTGAGGCTCATAATgccaaacaaaataaaaacagcctc
aacaaaaatgtactggttcttataaaaaatgagtgtagttgTTTCTAAAC
GAATAACGTTATGTTATGAACCTAACATGGACCTTAAAATAACATTGACC
ACCAAAAAAAGTACGAAGacaattttccattttcttcaattaagaatatg
ataagaacaattgaaaaaaaacgaaaaaatcttGTGTTAGAGTTGAGACT
TAAAACTGTATCTACATTTTCACTTAATTCAATCTTTCTAGGTTAACATT
TGACGTTTACCTGAGTGGAGATGCAGTAATCAAAGAGGGAACAACAGGCG
ATGAGATGTTTTTCGTGCGCAAAggatgtttagatgtttcagtGAAGGGA
AGATTGATTTATCAACTTAAAGGAGGCGAATATTTCGGAGGCAAGAAGTT
ATTTTATGCGTCTGGTCCTTAATTCCtaaaaaaaatgccattttgaaATT
ACCGTGAGTTCAcagtgtacacgttttttttataagagcatccacaattt
ttgaaaccttcggatgttcttaatttttgagttttaagcctaaaatgttc
ttaacatgttccttttttcgagttttttgttcatttttctaagaaataag
GCATTTTAGAGTCCACagagcctgaaaatgttcttaacttgttcttaata
ttttagccatcgaagccttgtgttcttatatagtttgttcttatgaaaat
aaGTGTGTAGCGGTGTAATGCATTAAGAGTGGAAAGTTTTAACGTTGCAA
TGGATTCTTTGGTTTGCAGGTACCACTTTCATAAAATaattcgatcaaag
atggcggataggATATAGCTTAGTCCAGGACTTGTAAAAGTCAGAGGGCA
GTCACTGTAAtgcttctttttttaatcttttcacAGATATTTGTATGTTA
ACAGATGATACAAAACACATCATAACAGTTGAAGCCCGAACAACATGTGA
TTTATTCTCACTTTCCTACAAGACTTTAGCAACATTATTGATACAGTACC
CTGAAGTGAGACCCATACTTGAACAAGCTGCTTTAAACCAATTGATGAAT
ATCACACAAACGGTATGTTTGTTCAGTTGAGGGTATCCTGCAATAAGAAT
GTACACTCATTGAGAGTCTTGGTTATCCTGCAATCGCGGTATAAAACGAA
TAAAAATGTACACTCATTGACAGTTAAGGGTATCCTGCAATTGCGatata
aaacaaacaaaatgtacATTTTACAGTAAATTTTTTACGAGACTCGACGA
TTTGAGcctaaaattttcttattatgTTCTTATTATTAGGGCAAAACTAG
ggtattttaggctttatacacgtttttaaggctttggagCCTCCAATACC
AATTATCTAAGAAATTGCACAGATTCACCCATACACTTTTAATTTACCTC
AATTAACTTGAGGTATGATTTTCCATATAACATTTCCCATAGATTGAATT
ACTGAACGCTGCACGAGAGAAGCAGAAAGAAAAGAACGGGTCGAACGGAC
CGTACGGAAGTAACAATAATAGTCCAGTTGTTAAAAAGCGGTCAACATTA
TCTCGACAGAGCTCATTGAACCAACTCAAGGAGCTGATCAACGGGACGGT
TGAAACACTTGctgctaaaataaaaacattcaaagaaGAAAACGACGTCA
TTGCTGAACGATTCGAAGACTCGATGACGTCACAGGAAATGATGCCGTCA
CAGGACAACACGCCTTGCAAACAGAAGAAAGATGAAAGTGCGATTATTGT
TGAAAATGAGCTTGAAGAAGGAACGCACAAAAATAAAGACAGTGACCCTA
CTACTGGCTCTGACCATGGACTCGACGACCCGACCAAAGACGATTTTCAT
GTGTCGACCTCGTTTTAAAAAGGTTACCAAGGTCACCAATGAGAACCTAT
TGCAAAATACGATTCGGAGATTAGTATTATCTAACCAGTCACGGGACACC
TGTTCCTCTATATAGCcatagtccttataaaaaacactatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039592XLOC_039592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063186-exon-scaffold_384-1491911889:26765..28306TCONS_00063186-exon-scaffold_384-1491911889:26765..28306Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:26765..28306TCONS_00063186-exon-scaffold_384-1510915933:26765..28306Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:26765..28306TCONS_00063186-exon-scaffold_384-1575043694:26765..28306Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:33425..33640TCONS_00063186-exon-scaffold_384-1491911889:33425..33640Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:33425..33640TCONS_00063186-exon-scaffold_384-1510915933:33425..33640Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:33425..33640TCONS_00063186-exon-scaffold_384-1575043694:33425..33640Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:34686..34890TCONS_00063186-exon-scaffold_384-1491911889:34686..34890Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:34686..34890TCONS_00063186-exon-scaffold_384-1510915933:34686..34890Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:34686..34890TCONS_00063186-exon-scaffold_384-1575043694:34686..34890Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:35075..35224TCONS_00063186-exon-scaffold_384-1491911889:35075..35224Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:35075..35224TCONS_00063186-exon-scaffold_384-1510915933:35075..35224Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:35075..35224TCONS_00063186-exon-scaffold_384-1575043694:35075..35224Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:35734..35952TCONS_00063186-exon-scaffold_384-1491911889:35734..35952Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:35734..35952TCONS_00063186-exon-scaffold_384-1510915933:35734..35952Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:35734..35952TCONS_00063186-exon-scaffold_384-1575043694:35734..35952Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:36796..36945TCONS_00063186-exon-scaffold_384-1491911889:36796..36945Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:36796..36945TCONS_00063186-exon-scaffold_384-1510915933:36796..36945Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:36796..36945TCONS_00063186-exon-scaffold_384-1575043694:36796..36945Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:38510..38601TCONS_00063186-exon-scaffold_384-1491911889:38510..38601Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:38510..38601TCONS_00063186-exon-scaffold_384-1510915933:38510..38601Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:38510..38601TCONS_00063186-exon-scaffold_384-1575043694:38510..38601Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:39701..39876TCONS_00063186-exon-scaffold_384-1491911889:39701..39876Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:39701..39876TCONS_00063186-exon-scaffold_384-1510915933:39701..39876Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:39701..39876TCONS_00063186-exon-scaffold_384-1575043694:39701..39876Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1491911889:40257..40806TCONS_00063186-exon-scaffold_384-1491911889:40257..40806Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1510915933:40257..40806TCONS_00063186-exon-scaffold_384-1510915933:40257..40806Clytia hemisphaericaexon
TCONS_00063186-exon-scaffold_384-1575043694:40257..40806TCONS_00063186-exon-scaffold_384-1575043694:40257..40806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:26765..40806 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0187245	0.042519	0	0	0	0	0	0	0	0	0.00651745	0.0279769	0	0	5.65243e-10	0	0	0	0	0	0	0.177704	0	0	0	0
Blast
[Close]
BLAST of TCONS_00063186 vs. Swiss-Prot (Human)
Match: HCN4 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 OS=Homo sapiens GN=HCN4 PE=1 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 7.567e-98
Identity = 186/430 (43.26%), Postives = 279/430 (64.88%), Query Frame = 2 
Query: 1331 NGRAASDGCTTQGSRKGSQRRTTSAEFIQEFLG----PADTPVNARLFGGKKGVQYEIERAKSYGY-VIHPCSKLRQYWDLLIMTMLVLNMMVLPLDIAFFDDNSL---ISFHVISDTLCMVDIILNFRTGYHLRKEKHEFELGHKKIAIHYLKTWFTLDLISSLPLHYILLAVSGQNVTLGLKGASRAXXXXXXXXXXXXXXXXXXSRIIRGIAQYEEVYCVT----TGFIRYIKLVCMMLMVAHWNGCLHFLVPMLQDFPEKCWVQECKIVNEPWYVQYGWALFKTLSHMLCIGYGRYIPALLDEALITIFSMVTGATFYALFIAHSMAFIIQRDSSKSTYQEKIKQIEEYMHHRNVPPEIKKRISNYFEHKYHQGRFFDEQAIMSVIGKPLREEIVHHTCKDLVESVPFLKAASPHFVTAVLDRYLY 2584
             G AA D    +     ++ R   A F+Q   G    P     + R+FG +K V+ E ER KS G+ +IHP S  R YWDL ++ ++V N++++P+ I FF D +    I F+V+SDT  ++D++LNFRTG  + ++  E  L  ++I + YLK+WF +D ISS+P+ YI L V    +   +   +RAL+ ++  K+L+LL+LLRLSR+IR I Q+EE++ +T    +  +R + L+ MML++ HW+GCL FLVPMLQDFP+ CWV    +VN  W  QY +ALFK +SHMLCIGYGR  P  + +  +T+ SM+ GAT YA+FI H+ A I   DSS+  YQEK KQ+E+YM    +PP+ ++RI +Y+EH+Y QG+ FDE++I+  + +PLREEI++  C+ LV S+P    A P+FVT++L +  +
Sbjct:  192 GGAAAGDQILPE-----AEVRLGQAGFMQRQFGAMLQPGVNKFSLRMFGSQKAVEREQERVKSAGFWIIHPYSDFRFYWDLTMLLLMVGNLIIIPVGITFFKDENTTPWIVFNVVSDTFFLIDLVLNFRTGI-VVEDNTEIILDPQRIKMKYLKSWFMVDFISSIPVDYIFLIVE-TRIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFPDDCWVSINNMVNNSWGKQYSYALFKAMSHMLCIGYGRQAPVGMSDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLRF 613
The following BLAST results are available for this feature:
BLAST of TCONS_00063186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HCN47.567e-9843.26Potassium/sodium hyperpolarization-activated cycli... [more]
back to top