TCONS_00063280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063280
Unique NameTCONS_00063280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063280 ID=TCONS_00063280|Name=TCONS_00063280|organism=Clytia hemisphaerica|type=transcript|length=1010bp
ataaataaaaacagaaaataatATCCAGCATCTATCAACAACAATTGTTA
TGGATCCTTTCGAGACGTCaagtttttcatcattgattgaacGCGAAGAG
AGAGAAGAAGTCATCCAATTAGATCTTCACACAGCTGCTCTCATCGGTGA
TTATGATATGGTGAGAGACTGCATCCACAAGAAGAGTGATTTGGACCACA
CCAACCGTGGTGGTTGGACTCCTCTCATGTATGCTGCATACGTTGGTCGT
GATAACATTCTCAACATGTTACTCGATGCTGGAGCTCGTATTGACATCCA
ATCAAAAAGTGTGAAATTGGGTAGCACTGCTCTTATGTTGGCTTCCTATT
GTGCTACAGAATCAATCATGTATTTCTTACTACAGCACGGTGCATCGATC
AATCTTCGAGATGGCGAAGGAATGACTAGTTTGTTTCATGCAGTGCGTCA
AGGTCACCAATCTGCTGTCAAATTACTGGCATCCAAAGGAGCTGATCTAG
ACCTTGGGCAATACTTGACTGGGATCACACCAATCATGGAAGCAGCTATA
TCCGGACACGAACTCATCTTCAATATTTTACTAGACCATGGTGCAGACAT
AACAAGGAGAACGAAAAAAGGAGAAACAGTCAAGAGTTTGGCCATGCGTC
ATAAGAATACATCTATAGTTGCACTGATTGATAAACACATTTCACCTCAA
GAACCTACCAGAAAGGAACCAACATTGGAGTTACACGACCAATTCGGTGC
ATCCATCTCATCCTCTGGTGTCATAGAAGGGAGCATCCAAGATGGACCTG
CCATTATTGATTCACTTATGAGAAATGCTGCCAATTCGGCGAGAAATCCA
GATTTTTCTGAAGGAGCACCCGTGGCATCACTTTGTCCAGAAATACAAAA
CAAACTCTCCATCCAAGGTCAAGGAGGTCCTCCACCGCAAATTAATAACC
CCGTATTTCAAAAtggtatttaattttttctttcttgtctttCTAATTCC
GAGACCAATA
Run BLAST on NCBI

protein sequence of TCONS_00063280-protein

>TCONS_00063280-protein ID=TCONS_00063280-protein|Name=TCONS_00063280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MDPFETSSFSSLIEREEREEVIQLDLHTAALIGDYDMVRDCIHKKSDLDH
TNRGGWTPLMYAAYVGRDNILNMLLDAGARIDIQSKSVKLGSTALMLASY
CATESIMYFLLQHGASINLRDGEGMTSLFHAVRQGHQSAVKLLASKGADL
DLGQYLTGITPIMEAAISGHELIFNILLDHGADITRRTKKGETVKSLAMR
HKNTSIVALIDKHISPQEPTRKEPTLELHDQFGASISSSGVIEGSIQDGP
AIIDSLMRNAANSARNPDFSEGAPVASLCPEIQNKLSIQGQGGPPPQINN
PVFQNGI
Run BLAST on NCBI

transcript from alignment at scaffold_385:279445..286549-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063280 ID=TCONS_00063280|Name=TCONS_00063280|organism=Clytia hemisphaerica|type=transcript|length=7105bp|location=Sequence derived from alignment at scaffold_385:279445..286549- (Clytia hemisphaerica)
ATAAATAAAAACAGAAAATAATATCCAGCATCTATCAACAACAATTGTTA
TGGATCCTTTCGAGACGTCAAGTTTTTCATCATTGATTGAACGCGAAGAG
AGAGAAGAAGTCATCCAATTAGATCTTCACACAGCTGCTCTCATCGGTGA
TTATGATATGGTGAGAGGTATGGAAGAGTTTAGTTTTATTCAAAAGGGTT
TGAGATATATCTTTTTGGATCAAACCTCACAAATTCTTTTCCCCAACTAT
TTTCCAAAGCCGAAATATTCAATAGTATAACTTTTTAACTTTTAGTAAGA
TAACATTAGAATTGTAAGTACCGTGTAAGAACCTATTTTCAGAAATTTGA
TATTGGGGTATCTCGACTCGAAAATAGTTAGGCAAATACTGGATTGTTTT
ACTTTTACTTAAGACAACGGTAGAAGGTTTCTGCAGGCCAAATATCTCAA
ACCATCTAACTACCCCTTAAACATTCGCCAAAATCTTTCGTATCGCAATC
AGTACTTTGAGTTACTACCTCCTTACACATTAGGGTTCCAAACTAGGAAG
GAATTCCAAAGTTAGGGCTGCTGAAGATAACTCAGAATCGCCCATAGTGT
CCTCCCCCCCCCCTTTATAAAGGGGGGGATTCTGATTTTGGCCCTTTTTT
TAAAGTATGGGGGAAAATGAAAAATTTGAAATTTGCTGGGGGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTGACTGGGGGAACTTCACTGATCTCAAGGTGAT
CTTGTTGCAAAACCTGTTTAAGCAATAAAATCAGCAAATCTTTTGGGATA
AACCAACTTTTCAATACAAGTTCATTTTTCCAGCACTTTCAAGGCTATTT
TTTCAAGATTTCCAAAATTTCAAACTTGATTTAAGGCATTTTTATGTTAA
CCATATGGGGAACCGCAAAATCTTCAAATAGCTGGGGGAATTCAAAAAAG
AGGGGGGAANTTCCAGCACTGTCAAGGCTATTTTTTCAAGCTTTCCAAAA
TTTCAAACTTGATTTAAGGCATTTTTATGTTAACCATATGGGGAACCGCA
AAATCTTCAAATATAGCTGGGGGAATTCAAAAAAGAGGGGGGAACCGAAA
AATTTTGAAATATGGTGGGGGAAATAAAGAGGGGGGAATGGAGAAAAATT
TTGATTTTTAGTGGGGGGAACCAACCCAGGAGGACACTATGTCGCCCCAA
CTCGGGAAGTCTTTCATAGCCTGGGACAACATAGAAAGCAGACACAAAAA
ACAAGGGTTTTCCAAAGTGGCAGACGACTATACTAAATTTATGTCAGCCT
TTTTACTGAAATAACTATGGATTTTTCATTCCAGAATTTAAATGAAAGAA
TATTTTGAGATTTGGAATGAGCTTATTTCAAGAGATCTTCTCAACTTCAC
ATAGTGTTATTCCAAGACCTCTATAATCTCTCTCGTTTGAGGATGAGCAG
AAGTCTAAGCTAAAATCTAATAATGTTTTCTGTGTTTTAATAAAATTTCC
TTGGTGTATGTGTAACCATAAACGCTTTATGCAACCTGGATACAAAATTA
AAAATCATGTTCCGGCATTCCATTTTTTAGCTGAATCACTTAATTGTTTT
CACTATTTTACCAGTATTAATAATAATCCACAAGGCATCCCTCCTATAAA
ATCACTGTAGTAACTTACTCTTAAATTTAACTAATCTTACATTAGACTGC
ATCCACAAGAAGAGTGATTTGGACCACACCAACCGTGGTGGTTGGACTCC
TCTCATGTATGCTGCATACGTTGGTCGTGATAACATTCTCAACATGTTAC
TCGATGCTGGAGCTCGTATTGACATCCAATCAAAAAGTGTGAAATTGGGT
AGCACTGCTCTTATGTTGGCTTCCTATTGTGCTACAGAATCAATCATGTA
TTTCTTACTACAGGTAGGATTTTTTTGTTAAAGGGATAATCAGATGGTCT
GAGATATTTTGCCTGCAGATAGCTTCTAGGATTTTAGGAAAAACCTCTAA
ATTTTTCGGTGTACTTATTTTCCTAACTCAAGTTATGCTAATTTGAAATC
TCGAAAAATGGGACTTTTCAGGGACAAAATTTCAAAGTGGCATAACTTGA
GTTAGGAAAATAAGTACACCGAAAAATTTAGAGGTTTCTCCTAAAATCCT
AGAAGCTATCTGCAGGCAAAATATCTCAGACCATCTGATTATCCCTTTAA
ACTCAATTCTTCACTCCTCTTTATCGTTCAGGTTTATTAAGCCCCTTATG
GTGGGCTTTTCCAGAAAACAATTTGATACGGGGGTGGAGGATATAACATT
TCTGGGAAATTTACCCACTAAACGTTGTGATTTTTGACCCCCGGACAGCA
GGTCTAACTCCCTGGACAAGCATCAGTTGACCCCCTGGACATCAAAATTA
CCCTAAAACAGAGAAAAATTACACCCAAAAAAGAGAAAATTTAACCCCCC
CCCCCCCACAAGGCAAATTTTGGAGATTTTTCACTACCCCCGGACACTAT
ATCCTCCACCCCCCATGTACGGGCATTTTATGGAAGAGCCCAGTTCATTA
AAAAATCATAGACAAAATCGTTTGGTTCATAACAAAGATTAAAAAGGCAA
TACCTAGAAAAGAGGTTCAAGCTAACGATCGTAGGAGCGAACCTCAAGGG
TAAATTTTCAGACCCTCGTAAGGTGCATTGAGACCGTAGCAACCGTACTT
CGGGGGTTCATTTTGCTGCGGAGAAAAGTTTGACGGGTTAGCGAGCGCCT
CGCCAAAAACCGGGATTTTGCTACTACAAGAGCTTCGAAAGTTTAAAGTG
ACGTAAAAAAGTCCTTCGAAAAGTGAAAAGGATAAAATAGTCTTCCCATT
ATTTTACTTTCCAACTTTTTAGCACGGTGCATCGATCAATCTTCGAGATG
GCGAAGGAATGACTAGTTTGTTTCATGCAGTGCGTCAAGGTCACCAATCT
GCTGTCAAATTACTGGCATCCAAAGGAGCTGATCTAGACCTTGGGTAAGT
CAAATAAATACATGCTTTTTCTTATAAGAATGGTGTTTTTTCATTTCATC
ATGGGTATTCTTAATTTTTTGGGAAAAATCCTAAAATATTCTTACGGTTT
TCTTTTGGGTAGAATCGAAATTTAAACTAAGTTTAATAAGAAAATACATT
TCTGAAGCATAAAATGGCATTTTTGTCAAGGTATTAAACCTGGGATAGTT
GGTAATTCAAAGTTAAAAAATTGTTCTTTAAATGCCATTCTGAGGGTTTG
TTGCCAAGTTTCATGATGATGATATTATAAAGTACATTCTTACAAAAAAT
ACGTGTATGTTTACAATTAGTATGCTGATAAAATAGTTACTTCTAAATTT
TACCCACGAAAAAGATTTTTTCTATTACTTTACTGACGATCTTATTACGA
AGTACCTTTCAATTACACACCCCGCTTCATCCCTTTCCACTGGAAAAATT
GGTCAAAATATCGTCCCCAGTTGAAAAACTCTAATTTTTATCAGATATGA
AGGTCCTCACTGCAAAATGTTATGCTATTTTTCTCATCCCCATTGACTTT
TTTGACTTGAAAACAAAAGAATTGAAATCCCCAGCCATAAAAAATATCAA
TCGCCATCAAGTTTTGGTCCGTTATTTTTATCCCACTGACTGATAAATTC
CCACCGGAATTTACTTCAACGCTCTTACTTGGGTAACGTTATTTGAACCT
CTTTTATTTGAACCTTTTTGTATCCATGTCATGAACTAAAATATTGTTCC
CTTAACTGGATAGCCTTTAATACGGCTTTAAATATACTCTCCGTATTATG
AATTTATCATTAATTCGAAAAAATTATTGAGTCCCTTCAAGATAGAATTA
GAGATAATCAACACTGTAAGTGTCATTTCTTTCTCATTTTGTAGGCAATA
CTTGACGGAGATCACGCTAATACACGCTTTTTTTTTATAAGAATGGTGTA
AATCCATTTCATCATGTATATTCTTAACTTTTTTGGGAAAATCATCCTAA
AATATTCTTACAGCATTCTTAGGTTAGGATCCTAATTGACTAAAAAATGG
TCTAAAAATGGCATTCTTAGCTCGAGTAGCAAAATTCTATGATGGTGATA
TTCTTCACATTTTTTGGCCATTTTCATCATGGACATTCTTTAAAGTGTAT
TCTTATTAAAAAAAAGCGTGTAATGCTAATGGAGATAAGAACTCCTATAG
ATGTGATGTTTCTTATTGAATCGTTTGTAATGATGAAATTTAATATTATT
TCCTTTCATTTTGCAGGCAATACTTGACTGGGATCACACCAATCATGGAA
GCAGCTATATCCGGACACGAACTCATCTTCAATATTTTACTAGACCATGT
AAGTCTCCTATATGTTATCATCGTGACTTTTTTTCCAGCTCCATCACTCA
CTTGATTCGATTACTAACTGAAATTAGTAAAATTTCGGAATTCCAGAGGG
GTATGATCCTAAAATTGCCTGGAATTCCAAGGGGGTAGGTCACAAAAGGT
TGGACCTTCTCAACAGGGGGTGTACGGTTTTTTCCTGGAAAAGTCTATTT
TTAGGCGAGAAAGATTTTTCATTTGCTAAGACCTATTTTCGCCTTGTCTT
TATTTGAATCATTGAATCATTGCGTCAGAAGAAGGCATCACAATTGCTTT
GAGAGTTGACTTTCTGACTCCTTTCGTTAAAAATGCGAGAGTGTAAAGCC
AAAAGTTTAACAATTCAAATAAGAGTCTATGGCTGTTTGGAATATTTCAT
ACATTGGTGAAAATTAATTTCATTATGTTACTACAATCACCAGGGTGCAG
ACATAACAAGGAGAACGAAAAAAGGAGAAACAGTCAAGAGTTTGGCCATG
CGTCATAAGAATACATCTATAGTTGCACTGATTGATAAACACATTTCACC
TCAAGAACCTACCAGAAAGGAACCAAGTAAGAATCAGTGTTGTAATTTTT
CCTTTGTATTTTCAAATTTTCGAAGTTCAATTGCGGAGGAAGGTAGAGGC
TTTAAATCCATTTTACAGGATGACGGGGGGGGTGCCCGGCCTTCGACCCT
CTGAACGGGGACTAAAAAGGAGGGAAAATTGGAAAAAGTTGTGAATTTTA
CGACCCCTATGGGACTAATTTGTCCAAATTTCGATGTTTTTAAGGGCAAA
AAATTTAAATTTTCTTATTTTTCCGACCTTGAATGCGATTGAAATTTAAT
TTTCTGATTTTTTTTAACCCTTACGGGCACTTGACTAAGTACCCCCCCCC
CCCCCAAAAAAAGTTGAGGTCCCTAATAAGGTCCTGGGTACTGCACCATG
TCAACCAAATTACTCATCAAACACAAAGCCTTTTTATAGCGCCCGTACAG
ATTCATAAATTCCGGCTACAACACTGAAAAACTCCGTGATCTAGTTTGAT
ATCTATCACTGTGAAGGTGTTTGCGATGCAAGATCAATCCTAGACTAGAG
TTTACTTCTGACTAAATTTTGCTTTTTGATAACTTTTTGACGCCGAGTCC
AGTCCGACTGAGCAAAGGCAGAAAATTACCATATACTACCGGGCCACTAA
ATCGTATTAGGATTAAATAATAATAGGATTGCCATCCAGTCTATAAAAAA
AGCTTTAAGTGGACCCCGGGCTAGGTCAATCCTCCATAGATCAACTAAAA
CAGAACCTCGGCAAAAGTTTTTTGCCAATCGCGAAAATTTAATCTTCAAA
TACAAATTTTTTGAACAACCATTAGCTCTTTGGAAATTACTCCTGCGGCG
TTGAGATAATTTCAAAATAACTTTTTATTTCGTTTCCCTTATCAGCATTG
GAGTTACACGACCAATTCGGTGCATCCATCTCATCCTCTGGTGTCATAGA
AGGGAGCATCCAAGATGGACCTGCCATTATTGATTCACTTATGAGAAATG
CTGCCAAGTAAGATTGTTTGTTTTTACGAAAATTTGAAAACCAAAATTGG
AAGAGTTTTTTCAGATAGATCATGCAAAATACCTCCGAAACTAGGAGACC
ATGTCATAGACTTCCGTATCGTTCCGAAACGAAAGGGTTCCGAAACTGCA
GTGGTGTGACCGTTAAAATTCGAAACTTCGAAAAAGAAGACGTTACAAAG
TAAAACAGATCAAAACGGCTTTGCTCCACTATTTTCATCGGAAAAATTGC
TCCGAAACGTTTCGAAACCAATATGAACACTCTCGATCCGTAACAGAAAC
CATACCGGCACGATACGAAACCGTAACGTCTGAACATGGCCTGATTTCCC
CTGACTTGCTGCGTATAGCTTACTAGATAAAAATCGGACTAAATCTCCGA
CCATGTTCATAGTTAACGGCTCTGCTTCGATCCAAAACGAAATGAAGCCG
TTCTACTGGTTAGAAGTGACGTAAAGATTGAACTTAACCAATGGAATGGC
TTCATTTCATTTCCGAGCGAAATGGAACCATAGTGTGTGAACCACAGATA
TCTTATATAAAACACTAGATGGAAGCCTAGTTGAAGCAAAATAATTCGCT
ATCTTGAATGAATTTTGAAGTCATTGCAGTGTCAAAAAAGTTTCAACAGT
GAAAAACCAAGTTTTCAACTGCGACCTACTGTGGCCTACCTTCAGCAAAG
ATGGCGGATTATTTTGCTTCTCCTGTCGTTGCTTGGGAAATGCAGAGTAG
CTCTATTTAGTGTTTATATAAAATATCTGTGATGTGAACGTGGTCTCAGA
GAGTAATGAAACGGAGAACTTTAACATGAATTATTGATATACATTCTTGA
TTGACTTCTTCGTATTTCCTTATTTTTAGTTCGGCGAGAAATCCAGATTT
TTCTGAAGGAGCACCCGTGGCATCACTTTGTCCAGAAATACAAAACAAAC
TCTCCATCCAAGGTCAAGGAGGTCCTCCACCGCAAATTAATAACCCCGTA
TTTCAAAATGGTATTTAATTTTTTCTTTCTTGTCTTTCTAATTCCGAGAC
CAATA

Coding sequence (CDS) from alignment at scaffold_385:279445..286549-

>TCONS_00063280 ID=TCONS_00063280|Name=TCONS_00063280|organism=Clytia hemisphaerica|type=CDS|length=6468bp|location=Sequence derived from alignment at scaffold_385:279445..286549- (Clytia hemisphaerica)
TTCGGCGAGAAATCCAGATTTTTCTGAAGGAGCACCCGTGGCATCACTTT
GTCCAGAAATACAAAACAAACTCTCCATCCAAGGTCAAGGAGGTCCTCCA
CCGCAAATTAATAACCCCGTATTTCAAAATGGTATTTAACATTGGAGTTA
CACGACCAATTCGGTGCATCCATCTCATCCTCTGGTGTCATAGAAGGGAG
CATCCAAGATGGACCTGCCATTATTGATTCACTTATGAGAAATGCTGCCA
AGGTGCAGACATAACAAGGAGAACGAAAAAAGGAGAAACAGTCAAGAGTT
TGGCCATGCGTCATAAGAATACATCTATAGTTGCACTGATTGATAAACAC
ATTTCACCTCAAGAACCTACCAGAAAGGAACCAAGCAATACTTGACTGGG
ATCACACCAATCATGGAAGCAGCTATATCCGGACACGAACTCATCTTCAA
TATTTTACTAGACCATCACGGTGCATCGATCAATCTTCGAGATGGCGAAG
GAATGACTAGTTTGTTTCATGCAGTGCGTCAAGGTCACCAATCTGCTGTC
AAATTACTGGCATCCAAAGGAGCTGATCTAGACCTTGGACTGCATCCACA
AGAAGAGTGATTTGGACCACACCAACCGTGGTGGTTGGACTCCTCTCATG
TATGCTGCATACGTTGGTCGTGATAACATTCTCAACATGTTACTCGATGC
TGGAGCTCGTATTGACATCCAATCAAAAAGTGTGAAATTGGGTAGCACTG
CTCTTATGTTGGCTTCCTATTGTGCTACAGAATCAATCATGTATTTCTTA
CTACAGATGGATCCTTTCGAGACGTCAAGTTTTTCATCATTGATTGAACG
CGAAGAGAGAGAAGAAGTCATCCAATTAGATCTTCACACAGCTGCTCTCA
TCGGTGATTATGATATGGTGAGAGTTCGGCGAGAAATCCAGATTTTTCTG
AAGGAGCACCCGTGGCATCACTTTGTCCAGAAATACAAAACAAACTCTCC
ATCCAAGGTCAAGGAGGTCCTCCACCGCAAATTAATAACCCCGTATTTCA
AAATGGTATTTAACATTGGAGTTACACGACCAATTCGGTGCATCCATCTC
ATCCTCTGGTGTCATAGAAGGGAGCATCCAAGATGGACCTGCCATTATTG
ATTCACTTATGAGAAATGCTGCCAAGGTGCAGACATAACAAGGAGAACGA
AAAAAGGAGAAACAGTCAAGAGTTTGGCCATGCGTCATAAGAATACATCT
ATAGTTGCACTGATTGATAAACACATTTCACCTCAAGAACCTACCAGAAA
GGAACCAAGCAATACTTGACTGGGATCACACCAATCATGGAAGCAGCTAT
ATCCGGACACGAACTCATCTTCAATATTTTACTAGACCATCACGGTGCAT
CGATCAATCTTCGAGATGGCGAAGGAATGACTAGTTTGTTTCATGCAGTG
CGTCAAGGTCACCAATCTGCTGTCAAATTACTGGCATCCAAAGGAGCTGA
TCTAGACCTTGGACTGCATCCACAAGAAGAGTGATTTGGACCACACCAAC
CGTGGTGGTTGGACTCCTCTCATGTATGCTGCATACGTTGGTCGTGATAA
CATTCTCAACATGTTACTCGATGCTGGAGCTCGTATTGACATCCAATCAA
AAAGTGTGAAATTGGGTAGCACTGCTCTTATGTTGGCTTCCTATTGTGCT
ACAGAATCAATCATGTATTTCTTACTACAGATGGATCCTTTCGAGACGTC
AAGTTTTTCATCATTGATTGAACGCGAAGAGAGAGAAGAAGTCATCCAAT
TAGATCTTCACACAGCTGCTCTCATCGGTGATTATGATATGGTGAGAGTT
CGGCGAGAAATCCAGATTTTTCTGAAGGAGCACCCGTGGCATCACTTTGT
CCAGAAATACAAAACAAACTCTCCATCCAAGGTCAAGGAGGTCCTCCACC
GCAAATTAATAACCCCGTATTTCAAAATGGTATTTAACATTGGAGTTACA
CGACCAATTCGGTGCATCCATCTCATCCTCTGGTGTCATAGAAGGGAGCA
TCCAAGATGGACCTGCCATTATTGATTCACTTATGAGAAATGCTGCCAAG
GTGCAGACATAACAAGGAGAACGAAAAAAGGAGAAACAGTCAAGAGTTTG
GCCATGCGTCATAAGAATACATCTATAGTTGCACTGATTGATAAACACAT
TTCACCTCAAGAACCTACCAGAAAGGAACCAAGCAATACTTGACTGGGAT
CACACCAATCATGGAAGCAGCTATATCCGGACACGAACTCATCTTCAATA
TTTTACTAGACCATCACGGTGCATCGATCAATCTTCGAGATGGCGAAGGA
ATGACTAGTTTGTTTCATGCAGTGCGTCAAGGTCACCAATCTGCTGTCAA
ATTACTGGCATCCAAAGGAGCTGATCTAGACCTTGGACTGCATCCACAAG
AAGAGTGATTTGGACCACACCAACCGTGGTGGTTGGACTCCTCTCATGTA
TGCTGCATACGTTGGTCGTGATAACATTCTCAACATGTTACTCGATGCTG
GAGCTCGTATTGACATCCAATCAAAAAGTGTGAAATTGGGTAGCACTGCT
CTTATGTTGGCTTCCTATTGTGCTACAGAATCAATCATGTATTTCTTACT
ACAGATGGATCCTTTCGAGACGTCAAGTTTTTCATCATTGATTGAACGCG
AAGAGAGAGAAGAAGTCATCCAATTAGATCTTCACACAGCTGCTCTCATC
GGTGATTATGATATGGTGAGAGTTCGGCGAGAAATCCAGATTTTTCTGAA
GGAGCACCCGTGGCATCACTTTGTCCAGAAATACAAAACAAACTCTCCAT
CCAAGGTCAAGGAGGTCCTCCACCGCAAATTAATAACCCCGTATTTCAAA
ATGGTATTTAACATTGGAGTTACACGACCAATTCGGTGCATCCATCTCAT
CCTCTGGTGTCATAGAAGGGAGCATCCAAGATGGACCTGCCATTATTGAT
TCACTTATGAGAAATGCTGCCAAGGTGCAGACATAACAAGGAGAACGAAA
AAAGGAGAAACAGTCAAGAGTTTGGCCATGCGTCATAAGAATACATCTAT
AGTTGCACTGATTGATAAACACATTTCACCTCAAGAACCTACCAGAAAGG
AACCAAGCAATACTTGACTGGGATCACACCAATCATGGAAGCAGCTATAT
CCGGACACGAACTCATCTTCAATATTTTACTAGACCATCACGGTGCATCG
ATCAATCTTCGAGATGGCGAAGGAATGACTAGTTTGTTTCATGCAGTGCG
TCAAGGTCACCAATCTGCTGTCAAATTACTGGCATCCAAAGGAGCTGATC
TAGACCTTGGACTGCATCCACAAGAAGAGTGATTTGGACCACACCAACCG
TGGTGGTTGGACTCCTCTCATGTATGCTGCATACGTTGGTCGTGATAACA
TTCTCAACATGTTACTCGATGCTGGAGCTCGTATTGACATCCAATCAAAA
AGTGTGAAATTGGGTAGCACTGCTCTTATGTTGGCTTCCTATTGTGCTAC
AGAATCAATCATGTATTTCTTACTACAGATGGATCCTTTCGAGACGTCAA
GTTTTTCATCATTGATTGAACGCGAAGAGAGAGAAGAAGTCATCCAATTA
GATCTTCACACAGCTGCTCTCATCGGTGATTATGATATGGTGAGAGTTCG
GCGAGAAATCCAGATTTTTCTGAAGGAGCACCCGTGGCATCACTTTGTCC
AGAAATACAAAACAAACTCTCCATCCAAGGTCAAGGAGGTCCTCCACCGC
AAATTAATAACCCCGTATTTCAAAATGGTATTTAACATTGGAGTTACACG
ACCAATTCGGTGCATCCATCTCATCCTCTGGTGTCATAGAAGGGAGCATC
CAAGATGGACCTGCCATTATTGATTCACTTATGAGAAATGCTGCCAAGGT
GCAGACATAACAAGGAGAACGAAAAAAGGAGAAACAGTCAAGAGTTTGGC
CATGCGTCATAAGAATACATCTATAGTTGCACTGATTGATAAACACATTT
CACCTCAAGAACCTACCAGAAAGGAACCAAGCAATACTTGACTGGGATCA
CACCAATCATGGAAGCAGCTATATCCGGACACGAACTCATCTTCAATATT
TTACTAGACCATCACGGTGCATCGATCAATCTTCGAGATGGCGAAGGAAT
GACTAGTTTGTTTCATGCAGTGCGTCAAGGTCACCAATCTGCTGTCAAAT
TACTGGCATCCAAAGGAGCTGATCTAGACCTTGGACTGCATCCACAAGAA
GAGTGATTTGGACCACACCAACCGTGGTGGTTGGACTCCTCTCATGTATG
CTGCATACGTTGGTCGTGATAACATTCTCAACATGTTACTCGATGCTGGA
GCTCGTATTGACATCCAATCAAAAAGTGTGAAATTGGGTAGCACTGCTCT
TATGTTGGCTTCCTATTGTGCTACAGAATCAATCATGTATTTCTTACTAC
AGATGGATCCTTTCGAGACGTCAAGTTTTTCATCATTGATTGAACGCGAA
GAGAGAGAAGAAGTCATCCAATTAGATCTTCACACAGCTGCTCTCATCGG
TGATTATGATATGGTGAGAGTTCGGCGAGAAATCCAGATTTTTCTGAAGG
AGCACCCGTGGCATCACTTTGTCCAGAAATACAAAACAAACTCTCCATCC
AAGGTCAAGGAGGTCCTCCACCGCAAATTAATAACCCCGTATTTCAAAAT
GGTATTTAACATTGGAGTTACACGACCAATTCGGTGCATCCATCTCATCC
TCTGGTGTCATAGAAGGGAGCATCCAAGATGGACCTGCCATTATTGATTC
ACTTATGAGAAATGCTGCCAAGGTGCAGACATAACAAGGAGAACGAAAAA
AGGAGAAACAGTCAAGAGTTTGGCCATGCGTCATAAGAATACATCTATAG
TTGCACTGATTGATAAACACATTTCACCTCAAGAACCTACCAGAAAGGAA
CCAAGCAATACTTGACTGGGATCACACCAATCATGGAAGCAGCTATATCC
GGACACGAACTCATCTTCAATATTTTACTAGACCATCACGGTGCATCGAT
CAATCTTCGAGATGGCGAAGGAATGACTAGTTTGTTTCATGCAGTGCGTC
AAGGTCACCAATCTGCTGTCAAATTACTGGCATCCAAAGGAGCTGATCTA
GACCTTGGACTGCATCCACAAGAAGAGTGATTTGGACCACACCAACCGTG
GTGGTTGGACTCCTCTCATGTATGCTGCATACGTTGGTCGTGATAACATT
CTCAACATGTTACTCGATGCTGGAGCTCGTATTGACATCCAATCAAAAAG
TGTGAAATTGGGTAGCACTGCTCTTATGTTGGCTTCCTATTGTGCTACAG
AATCAATCATGTATTTCTTACTACAGATGGATCCTTTCGAGACGTCAAGT
TTTTCATCATTGATTGAACGCGAAGAGAGAGAAGAAGTCATCCAATTAGA
TCTTCACACAGCTGCTCTCATCGGTGATTATGATATGGTGAGAGTTCGGC
GAGAAATCCAGATTTTTCTGAAGGAGCACCCGTGGCATCACTTTGTCCAG
AAATACAAAACAAACTCTCCATCCAAGGTCAAGGAGGTCCTCCACCGCAA
ATTAATAACCCCGTATTTCAAAATGGTATTTAACATTGGAGTTACACGAC
CAATTCGGTGCATCCATCTCATCCTCTGGTGTCATAGAAGGGAGCATCCA
AGATGGACCTGCCATTATTGATTCACTTATGAGAAATGCTGCCAAGGTGC
AGACATAACAAGGAGAACGAAAAAAGGAGAAACAGTCAAGAGTTTGGCCA
TGCGTCATAAGAATACATCTATAGTTGCACTGATTGATAAACACATTTCA
CCTCAAGAACCTACCAGAAAGGAACCAAGCAATACTTGACTGGGATCACA
CCAATCATGGAAGCAGCTATATCCGGACACGAACTCATCTTCAATATTTT
ACTAGACCATCACGGTGCATCGATCAATCTTCGAGATGGCGAAGGAATGA
CTAGTTTGTTTCATGCAGTGCGTCAAGGTCACCAATCTGCTGTCAAATTA
CTGGCATCCAAAGGAGCTGATCTAGACCTTGGACTGCATCCACAAGAAGA
GTGATTTGGACCACACCAACCGTGGTGGTTGGACTCCTCTCATGTATGCT
GCATACGTTGGTCGTGATAACATTCTCAACATGTTACTCGATGCTGGAGC
TCGTATTGACATCCAATCAAAAAGTGTGAAATTGGGTAGCACTGCTCTTA
TGTTGGCTTCCTATTGTGCTACAGAATCAATCATGTATTTCTTACTACAG
ATGGATCCTTTCGAGACGTCAAGTTTTTCATCATTGATTGAACGCGAAGA
GAGAGAAGAAGTCATCCAATTAGATCTTCACACAGCTGCTCTCATCGGTG
ATTATGATATGGTGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039657XLOC_039657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063280-proteinTCONS_00063280-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063280-exon-scaffold_385-1575043694:286383..286549TCONS_00063280-exon-scaffold_385-1575043694:286383..286549Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1575043694:284487..284704TCONS_00063280-exon-scaffold_385-1575043694:284487..284704Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1575043694:283406..283527TCONS_00063280-exon-scaffold_385-1575043694:283406..283527Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1575043694:282052..282133TCONS_00063280-exon-scaffold_385-1575043694:282052..282133Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1575043694:281474..281606TCONS_00063280-exon-scaffold_385-1575043694:281474..281606Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1575043694:280493..280604TCONS_00063280-exon-scaffold_385-1575043694:280493..280604Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1575043694:279445..279620TCONS_00063280-exon-scaffold_385-1575043694:279445..279620Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:286383..286549TCONS_00063280-exon-scaffold_385-1510915933:286383..286549Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:284487..284704TCONS_00063280-exon-scaffold_385-1510915933:284487..284704Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:283406..283527TCONS_00063280-exon-scaffold_385-1510915933:283406..283527Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:282052..282133TCONS_00063280-exon-scaffold_385-1510915933:282052..282133Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:281474..281606TCONS_00063280-exon-scaffold_385-1510915933:281474..281606Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:280493..280604TCONS_00063280-exon-scaffold_385-1510915933:280493..280604Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1510915933:279445..279620TCONS_00063280-exon-scaffold_385-1510915933:279445..279620Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:286383..286549TCONS_00063280-exon-scaffold_385-1491911889:286383..286549Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:284487..284704TCONS_00063280-exon-scaffold_385-1491911889:284487..284704Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:283406..283527TCONS_00063280-exon-scaffold_385-1491911889:283406..283527Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:282052..282133TCONS_00063280-exon-scaffold_385-1491911889:282052..282133Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:281474..281606TCONS_00063280-exon-scaffold_385-1491911889:281474..281606Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:280493..280604TCONS_00063280-exon-scaffold_385-1491911889:280493..280604Clytia hemisphaericaexon
TCONS_00063280-exon-scaffold_385-1491911889:279445..279620TCONS_00063280-exon-scaffold_385-1491911889:279445..279620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:279445..286549 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.01184	2.33234	3.05912	2.5513	18.0982	14.3958	21.6957	22.9235	14.7429	23.8555	13.9108	10.1178	18.8525	14.3474	17.9825	18.6772	15.2284	11.3486	13.7483	18.2296	5.22451	4.57446	6.65272	9.23403	6.65758	9.29457	7.59161	6.54639	10.9136	12.722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00063280 vs. Swiss-Prot (Human)
Match: ANKS3 (Ankyrin repeat and SAM domain-containing protein 3 OS=Homo sapiens GN=ANKS3 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 9.323e-55
Identity = 90/199 (45.23%), Postives = 131/199 (65.83%), Query Frame = 2 
Query:  113 IQLDLHTAALIGDYDMVRDCIHKKS-DLDHTNRGGWTPLMYAAYVGRDNILNMLLDAGARIDIQSKSVKLGSTALMLASYCATESIMYFLLQHGASINLRDGEGMTSLFHAVRQGHQSAVKLLASKGADLDLGQYLTGITPIMEAAISGHELIFNILLDHGADITRRTKKGETVKSLAMRHKNTSIVALIDKHISPQEP 706
            + LDLHTAA IG Y++V++C+ ++  DL+  N GGWTPLMYA+Y+G D I+++LL+AG  +++ +     G T LMLAS C  ESI YFLLQ GA + ++D +G T+LFH    GHQ  V+ L   GA+ ++ + + G TP+MEAA +GHE+I    L+HG  +  R   G T + LA ++ +  IVAL+D + SP  P
Sbjct:   35 VPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPE---GQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQHMVRFLLDSGANANVREPICGFTPLMEAAAAGHEIIVQYFLNHGVKVDARDHSGATARMLAKQYGHMKIVALMDTY-SPSLP 229
The following BLAST results are available for this feature:
BLAST of TCONS_00063280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANKS39.323e-5545.23Ankyrin repeat and SAM domain-containing protein 3... [more]
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