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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063336 ID=TCONS_00063336|Name=TCONS_00063336|organism=Clytia hemisphaerica|type=transcript|length=1595bp
GAATAATGCCATTTATATAAATGAgtttaaaaacagaaaaaaaatcaaaa
ttaactCTTTCTTAGTGAGTACTGACAAAAAATGAGCATGTATGAATCCT
TTGGTGATACAGTATTTCACGTAAAAACTAATTGGTATTCCGGTAACTTA
TATTCTAAGTCTGCCCACTCtgtaattaaataataaaaattgaatatcat
ttAAGACTAAAACAGCTACAGAAATTAAagtttcttgaattttttaaaat
gtaataacAGGTAAGTCCCCAAAACCTCtacaattcgaatgttttcttaa
ctcgaaaaagttgtCTGCTCCCCTCTTCGACTACGTACCAAACCACATTA
AAGCACGTTAGAATGTTAGTTACTCATAAAAAGAAGGTAAGAAGCACATG
TAACTGGGACATCTTTGCTTTCGCCATTGGTGTTCGAGTGCAGTTATAAA
AATTGTAACTTAATTATTTGTGAGTTCTTCATATGAATCTGTTTCTTGGA
TTTCAAAGCCTTCTTTCTCTTCTTCTGGGCAAAAAGCAGCGACATCTGTC
ATATCTTCTTTTCCCAATTGGGAACTTACCGATACGATACCGACCGCAGG
AACAAAGGGtacaaaatatctcaaaaaatgaagaaaaatcgaTGGAAGAA
ATTTAGCCGTAAGACCAGTTGCTACGGATGCCAAAACAAAGATAATGTTT
CCAAGGTGTCTCGCGATAAAGCTTTTCGGGAATCTGCCTCTCAACACTGA
ATATGTTTTTTCTAAACCGATCAAAAAGATGAAGACCAATTTGTAAGATG
CGTAGCCGAGACCAGCCGCTTCACCAAGGCGCAAATTAAGACGACTGCAT
TCGACATGTTTGGTTAATCTTTTCAACGGTTTACCAAATTCAGCATTGGT
GCTTGATGTATTTAAGGACGTGATAAAATCAGTATGGCAATTGATCTGTT
CTTTGGTGATTGTATTAAAGCATTCCCATTCTGTGTCATCTTCAAGTACA
GCATCCAGTGAACAGCCTTCACGTCGTTCGGTGGCCTCcataaaaatcac
gaaaaacgTTATCCACAAGCCATACGCTGCAAGACCGTACAACACAAAAG
CCAGTCGAAGTTTACTCAActttttttccacttttcgacCATTATATAGA
ACAATCTTCTCATGTGTTCCATCTTCCTTTTTCTCGGCGCGCTCCGTTAT
CAACTCGAAAGGAATCATTGCAGAGAAGACTTTTAATATGACCAAGGATT
GATGACCCTTGATACAATTCAAACGTTCTGGCAAGCGGAAAACAAAGAAG
CCAGCCACTTAAGTGATAACTAGTATAACACCTCCTATGATCCATAATTT
GATTTCTGTTTCAGTCGCCAGATCCATAGTGTCCAATAATACTGTCAAAC
ACAATTAATTTCCTTTCACCGATTGGGAATTGGGATATGAATTAGACACG
AATATAATCAGCTTGTTAGTTGATAATATTACAGAAATTATTAGAAACAG
TTGTTTTGCTACAACTTCACCAATATAAAACTCTGGATCTGATTGATTGA
ATCTTTTTGCAATAAACCTTATCAAAATAGGTTTTCAAGCTTTTT Run BLAST on NCBI protein sequence of TCONS_00063336-protein >TCONS_00063336-protein ID=TCONS_00063336-protein|Name=TCONS_00063336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MIPFELITERAEKKEDGTHEKIVLYNGRKVEKKLSKLRLAFVLYGLAAYG
LWITFFVIFMEATERREGCSLDAVLEDDTEWECFNTITKEQINCHTDFIT
SLNTSSTNAEFGKPLKRLTKHVECSRLNLRLGEAAGLGYASYKLVFIFLI
GLEKTYSVLRGRFPKSFIARHLGNIIFVLASVATGLTAKFLPSIFLHFLR
YFVPFVPAVGIVSVSSQLGKEDMTDVAAFCPEEEKEGFEIQETDSYEELT
NN Run BLAST on NCBI transcript from alignment at scaffold_385:375920..377514 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063336 ID=TCONS_00063336|Name=TCONS_00063336|organism=Clytia hemisphaerica|type=transcript|length=1595bp|location=Sequence derived from alignment at scaffold_385:375920..377514 (Clytia hemisphaerica)
AAAAAGCTTGAAAACCTATTTTGATAAGGTTTATTGCAAAAAGATTCAAT
CAATCAGATCCAGAGTTTTATATTGGTGAAGTTGTAGCAAAACAACTGTT
TCTAATAATTTCTGTAATATTATCAACTAACAAGCTGATTATATTCGTGT
CTAATTCATATCCCAATTCCCAATCGGTGAAAGGAAATTAATTGTGTTTG
ACAGTATTATTGGACACTATGGATCTGGCGACTGAAACAGAAATCAAATT
ATGGATCATAGGAGGTGTTATACTAGTTATCACTTAAGTGGCTGGCTTCT
TTGTTTTCCGCTTGCCAGAACGTTTGAATTGTATCAAGGGTCATCAATCC
TTGGTCATATTAAAAGTCTTCTCTGCAATGATTCCTTTCGAGTTGATAAC
GGAGCGCGCCGAGAAAAAGGAAGATGGAACACATGAGAAGATTGTTCTAT
ATAATGgtcgaaaagtggaaaaaaagTTGAGTAAACTTCGACTGGCTTTT
GTGTTGTACGGTCTTGCAGCGTATGGCTTGTGGATAAcgtttttcgtgat
ttttatgGAGGCCACCGAACGACGTGAAGGCTGTTCACTGGATGCTGTAC
TTGAAGATGACACAGAATGGGAATGCTTTAATACAATCACCAAAGAACAG
ATCAATTGCCATACTGATTTTATCACGTCCTTAAATACATCAAGCACCAA
TGCTGAATTTGGTAAACCGTTGAAAAGATTAACCAAACATGTCGAATGCA
GTCGTCTTAATTTGCGCCTTGGTGAAGCGGCTGGTCTCGGCTACGCATCT
TACAAATTGGTCTTCATCTTTTTGATCGGTTTAGAAAAAACATATTCAGT
GTTGAGAGGCAGATTCCCGAAAAGCTTTATCGCGAGACACCTTGGAAACA
TTATCTTTGTTTTGGCATCCGTAGCAACTGGTCTTACGGCTAAATTTCTT
CCAtcgatttttcttcattttttgagatattttgtaCCCTTTGTTCCTGC
GGTCGGTATCGTATCGGTAAGTTCCCAATTGGGAAAAGAAGATATGACAG
ATGTCGCTGCTTTTTGCCCAGAAGAAGAGAAAGAAGGCTTTGAAATCCAA
GAAACAGATTCATATGAAGAACTCACAAATAATTAAGTTACAATTTTTAT
AACTGCACTCGAACACCAATGGCGAAAGCAAAGATGTCCCAGTTACATGT
GCTTCTTACCTTCTTTTTATGAGTAACTAACATTCTAACGTGCTTTAATG
TGGTTTGGTACGTAGTCGAAGAGGGGAGCAGacaactttttcgagttaag
aaaacattcgaattgtaGAGGTTTTGGGGACTTACCTgttattacatttt
aaaaaattcaagaaactTTAATTTCTGTAGCTGTTTTAGTCTTaaatgat
attcaatttttattatttaattacaGAGTGGGCAGACTTAGAATATAAGT
TACCGGAATACCAATTAGTTTTTACGTGAAATACTGTATCACCAAAGGAT
TCATACATGCTCATTTTTTGTCAGTACTCACTAAGAAAGagttaattttg
attttttttctgtttttaaacTCATTTATATAAATGGCATTATTC Coding sequence (CDS) from alignment at scaffold_385:375920..377514 >TCONS_00063336 ID=TCONS_00063336|Name=TCONS_00063336|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_385:375920..377514 (Clytia hemisphaerica)
ATGATTCCTTTCGAGTTGATAACGGAGCGCGCCGAGAAAAAGGAAGATGG
AACACATGAGAAGATTGTTCTATATAATGgtcgaaaagtggaaaaaaagT
TGAGTAAACTTCGACTGGCTTTTGTGTTGTACGGTCTTGCAGCGTATGGC
TTGTGGATAAcgtttttcgtgatttttatgGAGGCCACCGAACGACGTGA
AGGCTGTTCACTGGATGCTGTACTTGAAGATGACACAGAATGGGAATGCT
TTAATACAATCACCAAAGAACAGATCAATTGCCATACTGATTTTATCACG
TCCTTAAATACATCAAGCACCAATGCTGAATTTGGTAAACCGTTGAAAAG
ATTAACCAAACATGTCGAATGCAGTCGTCTTAATTTGCGCCTTGGTGAAG
CGGCTGGTCTCGGCTACGCATCTTACAAATTGGTCTTCATCTTTTTGATC
GGTTTAGAAAAAACATATTCAGTGTTGAGAGGCAGATTCCCGAAAAGCTT
TATCGCGAGACACCTTGGAAACATTATCTTTGTTTTGGCATCCGTAGCAA
CTGGTCTTACGGCTAAATTTCTTCCAtcgatttttcttcattttttgaga
tattttgtaCCCTTTGTTCCTGCGGTCGGTATCGTATCGGTAAGTTCCCA
ATTGGGAAAAGAAGATATGACAGATGTCGCTGCTTTTTGCCCAGAAGAAG
AGAAAGAAGGCTTTGAAATCCAAGAAACAGATTCATATGAAGAACTCACA
AATAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063336-exon-scaffold_385-1491911889:375920..377514 | TCONS_00063336-exon-scaffold_385-1491911889:375920..377514 | Clytia hemisphaerica | exon |
| TCONS_00063336-exon-scaffold_385-1510915933:375920..377514 | TCONS_00063336-exon-scaffold_385-1510915933:375920..377514 | Clytia hemisphaerica | exon |
| TCONS_00063336-exon-scaffold_385-1575043694:375920..377514 | TCONS_00063336-exon-scaffold_385-1575043694:375920..377514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:375920..377514 . |
Blast
The following BLAST results are available for this feature:
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