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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063261 ID=TCONS_00063261|Name=TCONS_00063261|organism=Clytia hemisphaerica|type=transcript|length=1062bp
GGAAACatttaattaattaaaaaataaaaaacaaaatccaTTAGGGAATA
TCTGGGAATTAAATTTTGACAATATAAAATCTGGATTTTGTCACatcttg
aaattgaaatggtAAAACATCTTGATGAGAACCAGACGGCGGttaaaacg
aaaacgaaaacgaaacgAAAAACCTGcagaagaacaaagaaaaatatcaa
cagcAAAGATAAAGCAAAGaaaatgtttcCACCTATCGAACAAGACCATC
AACAAATCTTATTCGGCGATCAATACGTCCCCGATATGAGATATCTGCCC
AATATCAAATTGGAACCTTACTTCGAAACCGCCTACTATCCAACTTCATC
CCATAGCATCGATTTAAACACAACAAAATTCAACCCCATTGATAAAAACT
CGTTCCATACCCCTTGTTTTGATGGCTATCATACAACTACAACGAATACC
AACCTACTCAACCTTGGTCGGGAACCCTCTCCCACCCATCTTGGTCCTGA
CACAGACCAATCTTTAACACCCAACCTACCATGCGATACAGTCGTCAAAC
CACAAAAAATTGCTAAGAAAACACGTACCCGTAAAAGTCGAAACAGCTCA
ACATGTGGTAAAGTTAGATCCCGGCTCTCCTCAGACTCCGGTTTACCACG
AGAAAAAGACCGGGCACGAGTTTTCAACGAGGCATTCGAAGGACTTCGTA
AACGTATTCCCTCCATCCCTGCAACTaaaaaactttctaaaattgaaatt
ttgagattggcAATTTGTTATATGTCATACTTGAAGTTTGTGACAACTGA
TGATCCATTTCTGGTGAGCGTCGACAAAGAATCTGCAGATCAGCTAAGCT
AATGGAAGTACGTCTTTGGTCCCTATTAGCAAGAAGATCTGATGTGTGAT
TCACAAGAGCTCCACTTATTTTTCTactataaaaatcaaaattaaaatta
ttttctaaaaaactaaaaatataacttgtatatatttatttttaaaataa
gatatttatattttattaggTCATTATTTATTACAAAAAGATTATTCTTG
AATCAAccaaac Run BLAST on NCBI protein sequence of HlhIE-2 Helix-loo-helix transcription factor >TCONS_00063261-protein ID=TCONS_00063261-protein|Name=HlhIE-2 Helix-loo-helix transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MVKHLDENQTAVKTKTKTKRKTCRRTKKNINSKDKAKKMFPPIEQDHQQI
LFGDQYVPDMRYLPNIKLEPYFETAYYPTSSHSIDLNTTKFNPIDKNSFH
TPCFDGYHTTTTNTNLLNLGREPSPTHLGPDTDQSLTPNLPCDTVVKPQK
IAKKTRTRKSRNSSTCGKVRSRLSSDSGLPREKDRARVFNEAFEGLRKRI
PSIPATKKLSKIEILRLAICYMSYLKFVTTDDPFLVSVDKESADQLS Run BLAST on NCBI transcript from alignment at scaffold_385:433681..437799+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063261 ID=TCONS_00063261|Name=TCONS_00063261|organism=Clytia hemisphaerica|type=transcript|length=4119bp|location=Sequence derived from alignment at scaffold_385:433681..437799+ (Clytia hemisphaerica)
GGAAACatttaattaattaaaaaataaaaaacaaaatccaTTAGGGAATA
TCTGGGAATTAAATTTTGACAATATAAAATCTGGATTTTGTCACatcttg
aaattgaaatggtAAAACATCTTGATGAGAACCAGACGGCGGttaaaacg
aaaacgaaaacgaaacgAAAAACCTGcagaagaacaaagaaaaatatcaa
cagcAAAGATAAAGCAAAGGTTTGTACTATTTTTTTCTAGCTTTTacgcc
cccccagcggtttttGGGAATGTGTGAATgagctttttcacttgcgtgaa
tgcacgaattagaaaagtttgtgtgaacaaaaattgcgtgaatttcgaaa
aaacattgcgtgaatgcttgaatttgggaaaacaacttgcgtgattgcgt
gaattgaaggtccgctggggaGCCTCTTTTACAGTGGTaggaataaaatg
aaaatctacaatcTCGTGTGGCTGTGATACTGATTTGATTGGTGAAATCA
TTTTTGTTCACTCGTTTTTAACAAGAACAAATAAATCTTTGGTGAGACTc
ggatgtttttattttcttggaaatttgagcatgaatttgtttttttttta
acctgttttatttttgtttttatttttttggtaattctgaacctcgttgt
tcttatagaaagaGTAATATTTTTTCCTAAAATTCGTAAAAACTTTTGTC
TTATGAGTAACTTGCAGCTTGCGaaagttattttttgtttttttttggtt
atCTGACCctcaaaaaaaaatctctctGACAGTCCTAAAAACATCCTAAA
AACGTATATTTCAAAAAACCTAGTGTATATGTAGtcaatctttttatttt
cagaaaatgtttcCACCTATCGAACAAGACCATCAACAAATCTTATTCGG
CGATCAATACGTCCCCGATATGAGATATCTGCCCAATATCAAATTGGAAC
CTTACTTCGAAACCGCCTACTATCCAACTTCATCCCATAGCATCGATTTA
AACACAACAAAATTCAACCCCATTGATAAAAACTCGTTCCATACCCCTTG
TTTTGATGGCTATCATACAACTACAACGAATACCAACCTACTCAACCTTG
GTCGGGAACCCTCTCCCACCCATCTTGGTCCTGACACAGACCAATCTTTA
ACACCCAACCTACCATGCGATACAGTCGTCAAACCACAAAAAATTGCTAA
GAAAACACGTACCCGTAAAAGTCGAAACAGCTCAACATGTGGTAAAGTTA
GATCCCGGCTCTCCTCAGACTCCGGTTTACCACGAGAAAAAGACCGGGCA
CGAGTTTTCAACGAGGCATTCGAAGGACTTCGTAAACGTATTCCCTCCAT
CCCTGCAACTaaaaaactttctaaaattgaaattttgagattggcAATTT
GTTATATGTCATACTTGAAGTTTGTGACAACTGATGATCCATTTCTGGTG
AGCGTCGACAAAGAATCTGCAGATCAGCTAAGCTAATGGGTaagtttttt
tatctttaacgtggttttttataagaacaaactatataagaacataagat
ttcgatggcaaaaatgtgAAGAACAagttgaaaacattttaaatctttgc
agactctaaaacacccgatttataaggaaaatagccaaaaatactcatag
aatggtcaaaataagaacttgttaagaacattttttaggcttaaaactca
aaaagttaagaacatttgaaggcttcaaaaatttagaatgctctcataaa
aaaatgtgtataagaacataagacttcgattgCTAAATATCAAGAGCGAT
AACAGCAATTCAAGGCTTTAAAGACTCTGGCCCAATTGACTCTTTAAGAC
ATTTGTGCTTAAAAATTCGAAACTTTTTAAAAGCTAATGATGAAGTAGCT
AATTTAAGCCGGCACTTTGAGATACTAAatatagaaaattttcaatttta
tttagatAGTCATAGTTCGgggcaacctcgttccctgcgcattatcagct
ttttgatgcctactgatagcgctagataataccctggcattggctggttt
tcgaacgcgtaagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNccccctctgagagggggaacttgcatcagcc
aacaccagggtattctctggcgtcaatcagtaacgtaaataaagcctggg
atacacggggacgaggttgagttCGGGGAATTTTTGTCTCATAGAAGTGG
TTTTTAACACCTTACTATGAgccgattttcaaaaatgtgcCTTAGAATCA
TCAAATCGATCATCTAGATAATATACGTAAAATAATTTAAACGATACTTT
TAAGATCATTTCTATAAGAACGTttaaatttggccaaaacctaacaACAA
ATTGTGAACAATCTCAGCTTtcctcgggtgaaacaaggtatgtcccaaat
atattttgcgtgacgcgcaccgcttccaattattccttaacgttcatata
tagctcaaaagaatcatatcaacgagcggatttcgaaaagtgctgggtca
aaaatttgcattaagccaatctcaagatatcggtcaaaaattgattttga
cgttaaaaaatacatcgaaaaaacacgtcataagtaagattcaaatgacg
tcattattgaaaaacagcgatagcttaaattttattaatgcaatcaacac
caaattttgactggagttgtaaattaatgattctgaaatatttgttaaaa
aattttcagaaaatttgaatgacgtcatttgttgtcgggaaaaattcaaa
tacgtcaaaatatgctgacgtcatcatgaattttcaaaatttttttcatg
aaatattttagaatcgttaatttacatctccagtcaaaattttgctttga
ttgtaGTAAGTTAATCGGAATTATCGCCTTTTTTCAATAATGACGTCATT
TAAATTGTCTTTTTGACGTGTTTTTTCGATGTATTTTTTAAcgtcaaaat
cagtttttggccgatatcttgagattggcttgatgtaaatttttgaccca
gcacttttcgaaatcctctcgttgatacaattcttttgagctatatatga
aagttgatgaataatgggaagcggtgtgcgtcacgcaaaatatatttggg
acatgccttgtttcacccgagtcGATTTTAAACGGATTTAAGACCAATCT
TAGCCTTATGTTAAGCAAACTaagcatgttaagaacatcagaagcgacat
ttaagcctaaaaatctcGAATTATTAAGAAGGGCCGAGTCTCTGCTAAAG
TTTcgtggttcttataaaaagcgtgtagaaagttttctttattttgattg
gctcaTAAATAGTTATTGGTATCTTTCTAACAAAGGAATGCAAGTTGAGA
TTTCAAAACATGACaaataaacattaaattttttaGCGGTCCCGGTTTTA
CGAGTCAGCGCTAAAATGAtatattgttgttgttttgaagTTTTAAGACC
GATGCAgaatttcttgaattttaaTTCTTGTGGCCTGGGGGCATGCCACA
GTATCGTAGACAAGAGggacgcaaaatttgtgtaggagagcagatctttt
tgacacagtaattatctatCCATAAAGGTCAGTAAGGTTATTCAAACATC
CAAATAGAAATAAACTTTGAGGCTCGTTtaatgaaatctttctttttgCT
CTCTTATTTTAGAAGTACGTCTTTGGTCCCTATTAGCAAGAAGATCTGAT
GTGTGATTCACAAGAGCTCCACTTATTTTTCTactataaaaatcaaaatt
aaaattattttctaaaaaactaaaaatataacttgtatatatttattttt
aaaataagatatttatattttattaggTCATTATTTATTACAAAAAGATT
ATTCTTGAATCAAccaaac Coding sequence (CDS) from alignment at scaffold_385:433681..437799+ >TCONS_00063261 ID=TCONS_00063261|Name=TCONS_00063261|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_385:433681..437799+ (Clytia hemisphaerica)
atggtAAAACATCTTGATGAGAACCAGACGGCGGttaaaacgaaaacgaa
aacgaaacgAAAAACCTGcagaagaacaaagaaaaatatcaacagcAAAG
ATAAAGCAAAGaaaatgtttcCACCTATCGAACAAGACCATCAACAAATC
TTATTCGGCGATCAATACGTCCCCGATATGAGATATCTGCCCAATATCAA
ATTGGAACCTTACTTCGAAACCGCCTACTATCCAACTTCATCCCATAGCA
TCGATTTAAACACAACAAAATTCAACCCCATTGATAAAAACTCGTTCCAT
ACCCCTTGTTTTGATGGCTATCATACAACTACAACGAATACCAACCTACT
CAACCTTGGTCGGGAACCCTCTCCCACCCATCTTGGTCCTGACACAGACC
AATCTTTAACACCCAACCTACCATGCGATACAGTCGTCAAACCACAAAAA
ATTGCTAAGAAAACACGTACCCGTAAAAGTCGAAACAGCTCAACATGTGG
TAAAGTTAGATCCCGGCTCTCCTCAGACTCCGGTTTACCACGAGAAAAAG
ACCGGGCACGAGTTTTCAACGAGGCATTCGAAGGACTTCGTAAACGTATT
CCCTCCATCCCTGCAACTaaaaaactttctaaaattgaaattttgagatt
ggcAATTTGTTATATGTCATACTTGAAGTTTGTGACAACTGATGATCCAT
TTCTGGTGAGCGTCGACAAAGAATCTGCAGATCAGCTAAGCTAAatggtA
AAACATCTTGATGAGAACCAGACGGCGGttaaaacgaaaacgaaaacgaa
acgAAAAACCTGcagaagaacaaagaaaaatatcaacagcAAAGATAAAG
CAAAGaaaatgtttcCACCTATCGAACAAGACCATCAACAAATCTTATTC
GGCGATCAATACGTCCCCGATATGAGATATCTGCCCAATATCAAATTGGA
ACCTTACTTCGAAACCGCCTACTATCCAACTTCATCCCATAGCATCGATT
TAAACACAACAAAATTCAACCCCATTGATAAAAACTCGTTCCATACCCCT
TGTTTTGATGGCTATCATACAACTACAACGAATACCAACCTACTCAACCT
TGGTCGGGAACCCTCTCCCACCCATCTTGGTCCTGACACAGACCAATCTT
TAACACCCAACCTACCATGCGATACAGTCGTCAAACCACAAAAAATTGCT
AAGAAAACACGTACCCGTAAAAGTCGAAACAGCTCAACATGTGGTAAAGT
TAGATCCCGGCTCTCCTCAGACTCCGGTTTACCACGAGAAAAAGACCGGG
CACGAGTTTTCAACGAGGCATTCGAAGGACTTCGTAAACGTATTCCCTCC
ATCCCTGCAACTaaaaaactttctaaaattgaaattttgagattggcAAT
TTGTTATATGTCATACTTGAAGTTTGTGACAACTGATGATCCATTTCTGG
TGAGCGTCGACAAAGAATCTGCAGATCAGCTAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063261-exon-scaffold_385-1491911889:433681..433899 | TCONS_00063261-exon-scaffold_385-1491911889:433681..433899 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1510915933:433681..433899 | TCONS_00063261-exon-scaffold_385-1510915933:433681..433899 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1575043694:433681..433899 | TCONS_00063261-exon-scaffold_385-1575043694:433681..433899 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1491911889:434534..435169 | TCONS_00063261-exon-scaffold_385-1491911889:434534..435169 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1510915933:434534..435169 | TCONS_00063261-exon-scaffold_385-1510915933:434534..435169 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1575043694:434534..435169 | TCONS_00063261-exon-scaffold_385-1575043694:434534..435169 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1491911889:437593..437799 | TCONS_00063261-exon-scaffold_385-1491911889:437593..437799 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1510915933:437593..437799 | TCONS_00063261-exon-scaffold_385-1510915933:437593..437799 | Clytia hemisphaerica | exon |
| TCONS_00063261-exon-scaffold_385-1575043694:437593..437799 | TCONS_00063261-exon-scaffold_385-1575043694:437593..437799 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:433681..437799 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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