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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063368 ID=TCONS_00063368|Name=TCONS_00063368|organism=Clytia hemisphaerica|type=transcript|length=2224bp
TTAGGagatatgaaaaaatattaaatagtAAAAAGATGGATTTTGATTTG
TTACCAAACGAATTGTTACGAACTGTCATTTCGTATCTGGATATCAAGAG
TGCCAAACAAATGTCACTCGTATCAAAGAGAATGTACTCATTTGCCCTTC
AAAGAATATGGTTGAAACCAAGATATTCATGGCCAgcaaaagaaattgat
tttcttgAGAAAATATCACAGTTTCCAATAAGTGAGCTGCATACCGGCGA
CTTTGATTGTACTTGGTTTGAACTCATCACTTTAGTTCCAAGATTAAAAC
TTTTACATGTAACTGCCCCTAAACAACTTAGCCAATATAGAATTAAAACT
CCAAAAATGTCACGTCTGCGCTTATTGAAAGTGCCCACCATTGTTTATAC
CAAGGCTTTGGAGTTGAGTGAACAAGAACATTTCAGCCAGCTGTCAGAGA
TAATAGAATTGATTGATGTTAAGGAATTGATTATCGATCGCTCATGTCCT
GTGTACGACGATGGGAAATCAAGTAGAAGGTtttcttttccaaattttga
aatgctTGTTGGAAAAGTTAGGATATCAGAAATCTGGATGGATTGTCTTG
AAATAAATGATCAAAATGCTGAAGAATTTATAAGACTTCTAGCTACGATA
AAGAATTGCCGGCTAATTTTTCCGCACCCCAGCTCAACTGCTTACCACAA
ATATACAGTCAGAGATTTAGAATTAATGGTAAAGTTTGATTTGAAGATAA
CAACTATCAACAGTAGGTCTTTAAGAACTGAAGGTAAAGTCTCTAAACTT
CTTGAATTTGCAAAGGtaatgaagaaaatgaaatatcttGAGGAGTTCAA
ATGTGACGATTTTGATCAAGATACTGGCGTTTAtgcgccaatggaattgc
tgACAGACCTCCCAATTAAGTTTTTGATTTCCTGGAATTTCGAATTTCAT
GAAGGGGGAATAGAAGATATTGCAAAAACACTTTCTCGTATGAAACATTT
GACAGAATTTTACCTCCAACAGAATTACCATGTTTTCTTGCTTTCACCAG
AAGAGCTCGCATTGTTTAAGGATGTACCCATTACTTGTCTTGAACTATGT
GTACTTGATTTGAAAAGAGACAATattgataaatttcaaaatgtaatgAA
AGAAATGAGGATCAAATTTATTGAATGGGGAGATTATAAAGGTCCTGAag
actttgattttgaaataaaagttaaaccttTTGGACTTGGTGGCATTTAC
AAAACAATTTCNNNCCCTTTGGTCTTATGACCAactcaaaatgttttttg
gaaaGGTGCACATCAGTAAAATATCAGTTGGTTGTCTTTCAATTACAAAA
GAAAATGCGAAAGATTTTTTTCGGATGCTATCAGCCATCGATTGTCCGAT
AACTTTATCCCAACCTTGTCAATATAAATTCACTGTTGATGATGTAAAAC
TAatggaaaaattgaatttgaaaattgtttacattGAAAGTAGATATTTA
AAAACAGATGAGGAAATTTCCAAACTTTTAGAATTTGCTGAAGTGATGAG
GAAAATGAAACATCTTAAAGAGTTTTATTTTAGCCCTGAAGAGTTTGATA
GAAATGATCAAGTGTTTGCTCCAATGGAATTACTAACAGACCTGCCAATC
AAATATTTATACTCATCAAATTTTGAGTTTGAGAAAAGACACTTTAGAGA
TATTGTTAACACACTTTCACGAATAAAATCCTTGATTGGCTTCGGAATCT
ACAACGATCTAGACGATGATAAATTGACACCTGACGAACTTGAGCTGTTT
AAGGATATACCAATAAACAATCTAGATGTAGATTCTTTAGACTTGAGAAA
AGACAATGTtgatgattttcaaaatattatgaaagGGATGAAAATTACAG
ATATTGAGATGCCCTACTGTGGCTATGATGATAGTTTATATGATATTAAG
CTAGAAATTAAAAATGTTGGCCCAGGTGGAATATATAGAACTATTTGACa
tctttttaataatatttaCGAGACCCCGATTTGCATGATCAAAACTTTCT
TGCCATAATTAAGGCTTTTTTCTTGTATGTTGGTGTGcttgaaattttcc
aaaatagttTTTATACTTTGTCTGTATCAATGATATCTTTCACCAACAAG
GTTTCATCTATTAAATTTTACCTTTCTTTTTCTATAAGGACATAATTATC
CTAGGACTGGAGTATGAATTTCGG Run BLAST on NCBI protein sequence of TCONS_00063368-protein >TCONS_00063368-protein ID=TCONS_00063368-protein|Name=TCONS_00063368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
RRYEKILNSKKMDFDLLPNELLRTVISYLDIKSAKQMSLVSKRMYSFALQ
RIWLKPRYSWPAKEIDFLEKISQFPISELHTGDFDCTWFELITLVPRLKL
LHVTAPKQLSQYRIKTPKMSRLRLLKVPTIVYTKALELSEQEHFSQLSEI
IELIDVKELIIDRSCPVYDDGKSSRRFSFPNFEMLVGKVRISEIWMDCLE
INDQNAEEFIRLLATIKNCRLIFPHPSSTAYHKYTVRDLELMVKFDLKIT
TINSRSLRTEGKVSKLLEFAKVMKKMKYLEEFKCDDFDQDTGVYAPMELL
TDLPIKFLISWNFEFHEGGIEDIAKTLSRMKHLTEFYLQQNYHVFLLSPE
ELALFKDVPITCLELCVLDLKRDNIDKFQNVMKEMRIKFIEWGDYKGPED
FDFEIKVKPFGLGGIYKTIXXPLVL Run BLAST on NCBI transcript from alignment at scaffold_386:23958..26181 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063368 ID=TCONS_00063368|Name=TCONS_00063368|organism=Clytia hemisphaerica|type=transcript|length=2224bp|location=Sequence derived from alignment at scaffold_386:23958..26181 (Clytia hemisphaerica)
CCGAAATTCATACTCCAGTCCTAGGATAATTATGTCCTTATAGAAAAAGA
AAGGTAAAATTTAATAGATGAAACCTTGTTGGTGAAAGATATCATTGATA
CAGACAAAGTATAAAaactattttggaaaatttcaagCACACCAACATAC
AAGAAAAAAGCCTTAATTATGGCAAGAAAGTTTTGATCATGCAAATCGGG
GTCTCGtaaatattattaaaaagatGTCAAATAGTTCTATATATTCCACC
TGGGCCAACATTTTTAATTTCTAGCTTAATATCATATAAACTATCATCAT
AGCCACAGTAGGGCATCTCAATATCTGTAATTTTCATCCctttcataata
ttttgaaaatcatcaACATTGTCTTTTCTCAAGTCTAAAGAATCTACATC
TAGATTGTTTATTGGTATATCCTTAAACAGCTCAAGTTCGTCAGGTGTCA
ATTTATCATCGTCTAGATCGTTGTAGATTCCGAAGCCAATCAAGGATTTT
ATTCGTGAAAGTGTGTTAACAATATCTCTAAAGTGTCTTTTCTCAAACTC
AAAATTTGATGAGTATAAATATTTGATTGGCAGGTCTGTTAGTAATTCCA
TTGGAGCAAACACTTGATCATTTCTATCAAACTCTTCAGGGCTAAAATAA
AACTCTTTAAGATGTTTCATTTTCCTCATCACTTCAGCAAATTCTAAAAG
TTTGGAAATTTCCTCATCTGTTTTTAAATATCTACTTTCaatgtaaacaa
ttttcaaattcaatttttccatTAGTTTTACATCATCAACAGTGAATTTA
TATTGACAAGGTTGGGATAAAGTTATCGGACAATCGATGGCTGATAGCAT
CCGAAAAAAATCTTTCGCATTTTCTTTTGTAATTGAAAGACAACCAACTG
ATATTTTACTGATGTGCACCtttccaaaaaacattttgagtTGGTCATAA
GACCAAAGGGNNNGAAATTGTTTTGTAAATGCCACCAAGTCCAAaaggtt
taacttttatttcaaaatcaaagtctTCAGGACCTTTATAATCTCCCCAT
TCAATAAATTTGATCCTCATTTCTTTcattacattttgaaatttatcaat
ATTGTCTCTTTTCAAATCAAGTACACATAGTTCAAGACAAGTAATGGGTA
CATCCTTAAACAATGCGAGCTCTTCTGGTGAAAGCAAGAAAACATGGTAA
TTCTGTTGGAGGTAAAATTCTGTCAAATGTTTCATACGAGAAAGTGTTTT
TGCAATATCTTCTATTCCCCCTTCATGAAATTCGAAATTCCAGGAAATCA
AAAACTTAATTGGGAGGTCTGTcagcaattccattggcgcaTAAACGCCA
GTATCTTGATCAAAATCGTCACATTTGAACTCCTCaagatatttcatttt
cttcattaCCTTTGCAAATTCAAGAAGTTTAGAGACTTTACCTTCAGTTC
TTAAAGACCTACTGTTGATAGTTGTTATCTTCAAATCAAACTTTACCATT
AATTCTAAATCTCTGACTGTATATTTGTGGTAAGCAGTTGAGCTGGGGTG
CGGAAAAATTAGCCGGCAATTCTTTATCGTAGCTAGAAGTCTTATAAATT
CTTCAGCATTTTGATCATTTATTTCAAGACAATCCATCCAGATTTCTGAT
ATCCTAACTTTTCCAACAagcatttcaaaatttggaaaagaaaACCTTCT
ACTTGATTTCCCATCGTCGTACACAGGACATGAGCGATCGATAATCAATT
CCTTAACATCAATCAATTCTATTATCTCTGACAGCTGGCTGAAATGTTCT
TGTTCACTCAACTCCAAAGCCTTGGTATAAACAATGGTGGGCACTTTCAA
TAAGCGCAGACGTGACATTTTTGGAGTTTTAATTCTATATTGGCTAAGTT
GTTTAGGGGCAGTTACATGTAAAAGTTTTAATCTTGGAACTAAAGTGATG
AGTTCAAACCAAGTACAATCAAAGTCGCCGGTATGCAGCTCACTTATTGG
AAACTGTGATATTTTCTcaagaaaatcaatttcttttgcTGGCCATGAAT
ATCTTGGTTTCAACCATATTCTTTGAAGGGCAAATGAGTACATTCTCTTT
GATACGAGTGACATTTGTTTGGCACTCTTGATATCCAGATACGAAATGAC
AGTTCGTAACAATTCGTTTGGTAACAAATCAAAATCCATCTTTTTactat
ttaatattttttcatatctCCTAA Coding sequence (CDS) from alignment at scaffold_386:23958..26181 >TCONS_00063368 ID=TCONS_00063368|Name=TCONS_00063368|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_386:23958..26181 (Clytia hemisphaerica)
TCATAAGACCAAAGGGNNNGAAATTGTTTTGTAAATGCCACCAAGTCCAA
aaggtttaacttttatttcaaaatcaaagtctTCAGGACCTTTATAATCT
CCCCATTCAATAAATTTGATCCTCATTTCTTTcattacattttgaaattt
atcaatATTGTCTCTTTTCAAATCAAGTACACATAGTTCAAGACAAGTAA
TGGGTACATCCTTAAACAATGCGAGCTCTTCTGGTGAAAGCAAGAAAACA
TGGTAATTCTGTTGGAGGTAAAATTCTGTCAAATGTTTCATACGAGAAAG
TGTTTTTGCAATATCTTCTATTCCCCCTTCATGAAATTCGAAATTCCAGG
AAATCAAAAACTTAATTGGGAGGTCTGTcagcaattccattggcgcaTAA
ACGCCAGTATCTTGATCAAAATCGTCACATTTGAACTCCTCaagatattt
cattttcttcattaCCTTTGCAAATTCAAGAAGTTTAGAGACTTTACCTT
CAGTTCTTAAAGACCTACTGTTGATAGTTGTTATCTTCAAATCAAACTTT
ACCATTAATTCTAAATCTCTGACTGTATATTTGTGGTAAGCAGTTGAGCT
GGGGTGCGGAAAAATTAGCCGGCAATTCTTTATCGTAGCTAGAAGTCTTA
TAAATTCTTCAGCATTTTGATCATTTATTTCAAGACAATCCATCCAGATT
TCTGATATCCTAACTTTTCCAACAagcatttcaaaatttggaaaagaaaA
CCTTCTACTTGATTTCCCATCGTCGTACACAGGACATGAGCGATCGATAA
TCAATTCCTTAACATCAATCAATTCTATTATCTCTGACAGCTGGCTGAAA
TGTTCTTGTTCACTCAACTCCAAAGCCTTGGTATAAACAATGGTGGGCAC
TTTCAATAAGCGCAGACGTGACATTTTTGGAGTTTTAATTCTATATTGGC
TAAGTTGTTTAGGGGCAGTTACATGTAAAAGTTTTAATCTTGGAACTAAA
GTGATGAGTTCAAACCAAGTACAATCAAAGTCGCCGGTATGCAGCTCACT
TATTGGAAACTGTGATATTTTCTcaagaaaatcaatttcttttgcTGGCC
ATGAATATCTTGGTTTCAACCATATTCTTTGAAGGGCAAATGAGTACATT
CTCTTTGATACGAGTGACATTTGTTTGGCACTCTTGATATCCAGATACGA
AATGACAGTTCGTAACAATTCGTTTGGTAACAAATCAAAATCCATCTTTT
TactatttaatattttttcatatctCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063368-exon-scaffold_386-1491911889:23958..26181 | TCONS_00063368-exon-scaffold_386-1491911889:23958..26181 | Clytia hemisphaerica | exon |
| TCONS_00063368-exon-scaffold_386-1510915933:23958..26181 | TCONS_00063368-exon-scaffold_386-1510915933:23958..26181 | Clytia hemisphaerica | exon |
| TCONS_00063368-exon-scaffold_386-1575043694:23958..26181 | TCONS_00063368-exon-scaffold_386-1575043694:23958..26181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_386 | supercontig | scaffold_386:23958..26181 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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